SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G14350 AT1G14350 AT1G14350 AT1G14350 AT2G02820 AT2G02820 AT2G02820 |
| fragaria_vesca | FvH4_4g31660 FvH4_4g31660 FvH4_4g31660 FvH4_4g31660 FvH4_4g31660 FvH4_4g31660 |
| malus_domestica | MD13G1075000.v1.1 MD16G1076100.v1.1 |
| prunus_persica | Prupe.1G271100_v2.0.a1 Prupe.1G271100_v2.0.a1 Prupe.1G271100_v2.0.a1 Prupe.1G271100_v2.0.a1 Prupe.1G271100_v2.0.a1 Prupe.1G271100_v2.0.a1 Prupe.1G271100_v2.0.a1 Prupe.1G271100_v2.0.a1 Prupe.1G271100_v2.0.a1 Prupe.1G271100_v2.0.a1 Prupe.1G271100_v2.0.a1 Prupe.1G271100_v2.0.a1 Prupe.1G271100_v2.0.a1 Prupe.1G271100_v2.0.a1 Prupe.1G271100_v2.0.a1 Prupe.1G271100_v2.0.a1 |
| pyrus_communis | pycom13g06680 pycom16g06610 |
| rosa_chinensis | RchiOBHm_Chr4g0440161 |
| rosa_laevigata | RLG00000006200 |
| rosa_multiflora | Rmu_co8051018.1_g000001 |
| rosa_roxburghii | Rroxscaffold_5G00381090 |
| rosa_rugosa | Rorug04G0324900 Rorug04G0324900 Rorug04G0324900 |
| rosa_samantha | Rh4AG375700 Rh4BG388200 Rh4CG402800 Rh4DG382400 |
| rosa_wichuraiana | Rw4G032150 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 434 |
| Acc16I | TGCGCA | 1 cut(s) | 107 |
| Acc36I | ACCTGC | 1 cut(s) | 645 |
| AccI | GTMKAC | 2 cut(s) | 630, 964 |
| AciI | CCGC | 1 cut(s) | 5 |
| AclWI | GGATC | 3 cut(s) | 718, 725, 1120 |
| AcsI | RAATTY | 5 cut(s) | 158, 211, 616, 1314, 1328 |
| AfaI | GTAC | 5 cut(s) | 200, 486, 949, 1024, 1087 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 1133 |
| AflII | CTTAAG | 1 cut(s) | 940 |
| AgeI | ACCGGT | 1 cut(s) | 345 |
| AjnI | CCWGG | 5 cut(s) | 77, 676, 840, 1003, 1108 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 105, 121, 137, 153 |
| AluBI | AGCT | 7 cut(s) | 28, 392, 586, 593, 774, 1076, 1350 |
| AluI | AGCT | 7 cut(s) | 28, 392, 586, 593, 774, 1076, 1350 |
| Alw21I | GWGCWC | 2 cut(s) | 595, 840 |
| Alw26I | GTCTC | 4 cut(s) | 87, 172, 184, 1383 |
| AlwI | GGATC | 3 cut(s) | 718, 725, 1120 |
| AoxI | GGCC | 1 cut(s) | 384 |
| ApeKI | GCWGC | 4 cut(s) | 583, 686, 976, 1307 |
| ApoI | RAATTY | 5 cut(s) | 158, 211, 616, 1314, 1328 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 539, 571 |
| AsiGI | ACCGGT | 1 cut(s) | 345 |
| AspLEI | GCGC | 2 cut(s) | 66, 108 |
| AsuHPI | GGTGA | 1 cut(s) | 231 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 468, 501 |
| BanII | GRGCYC | 2 cut(s) | 595, 1435 |
| BbsI | GAAGAC | 1 cut(s) | 255 |
| Bbv12I | GWGCWC | 2 cut(s) | 595, 840 |
| BbvI | GCAGC | 4 cut(s) | 595, 698, 988, 1319 |
| BccI | CCATC | 6 cut(s) | 189, 228, 285, 458, 976, 1213 |
| BciT130I | CCWGG | 5 cut(s) | 79, 678, 842, 1005, 1110 |
| BcoDI | GTCTC | 4 cut(s) | 87, 172, 184, 1383 |
| BfmI | CTRYAG | 1 cut(s) | 480 |
| BfoI | RGCGCY | 1 cut(s) | 67 |
| BfrI | CTTAAG | 1 cut(s) | 940 |
| BfuAI | ACCTGC | 1 cut(s) | 645 |
| BglII | AGATCT | 3 cut(s) | 916, 985, 1298 |
| BisI | GCNGC | 5 cut(s) | 5, 584, 687, 977, 1308 |
| BlpI | GCTNAGC | 1 cut(s) | 770 |
| BlsI | GCNGC | 5 cut(s) | 6, 585, 688, 978, 1309 |
| BmcAI | AGTACT | 1 cut(s) | 949 |
| Bme1390I | CCNGG | 5 cut(s) | 79, 678, 842, 1005, 1110 |
| BmiI | GGNNCC | 2 cut(s) | 15, 1183 |
| BmrFI | CCNGG | 5 cut(s) | 79, 678, 842, 1005, 1110 |
| BmsI | GCATC | 2 cut(s) | 741, 1222 |
| BoxI | GACNNNNGTC | 1 cut(s) | 813 |
| BpiI | GAAGAC | 1 cut(s) | 255 |
| BpmI | CTGGAG | 1 cut(s) | 824 |
| Bpu10I | CCTNAGC | 1 cut(s) | 388 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 770 |
| BpuEI | CTTGAG | 2 cut(s) | 69, 704 |
| BsaBI | GATNNNNATC | 1 cut(s) | 1117 |
| BsaI | GGTCTC | 1 cut(s) | 87 |
| BsaJI | CCNNGG | 5 cut(s) | 306, 666, 676, 677, 1003 |
| BsaWI | WCCGGW | 1 cut(s) | 345 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 1419, 1449 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 1133 |
| Bse118I | RCCGGY | 1 cut(s) | 345 |
| Bse1I | ACTGG | 1 cut(s) | 1176 |
| Bse3DI | GCAATG | 1 cut(s) | 147 |
| Bse8I | GATNNNNATC | 1 cut(s) | 1117 |
| BseBI | CCWGG | 5 cut(s) | 79, 678, 842, 1005, 1110 |
| BseDI | CCNNGG | 5 cut(s) | 306, 666, 676, 677, 1003 |
| BseGI | GGATG | 4 cut(s) | 100, 239, 513, 873 |
| BseJI | GATNNNNATC | 1 cut(s) | 1117 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 1133 |
| BseMI | GCAATG | 1 cut(s) | 147 |
| BseMII | CTCAG | 2 cut(s) | 784, 892 |
| BseNI | ACTGG | 1 cut(s) | 1176 |
| BseRI | GAGGAG | 4 cut(s) | 26, 104, 517, 1112 |
| BseXI | GCAGC | 4 cut(s) | 595, 698, 988, 1319 |
| BseYI | CCCAGC | 1 cut(s) | 1319 |
| BsgI | GTGCAG | 1 cut(s) | 205 |
| BshFI | GGCC | 1 cut(s) | 386 |
| BshTI | ACCGGT | 1 cut(s) | 345 |
| BsiHKAI | GWGCWC | 2 cut(s) | 595, 840 |
| BsiSI | CCGG | 1 cut(s) | 346 |
| BslFI | GGGAC | 4 cut(s) | 560, 659, 985, 1027 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 1133 |
| BsmAI | GTCTC | 4 cut(s) | 87, 172, 184, 1383 |
| BsmBI | CGTCTC | 1 cut(s) | 184 |
| BsmFI | GGGAC | 4 cut(s) | 560, 659, 985, 1027 |
| BsmI | GAATGC | 1 cut(s) | 688 |
| BsnI | GGCC | 1 cut(s) | 386 |
| Bso31I | GGTCTC | 1 cut(s) | 87 |
| Bsp1286I | GDGCHC | 3 cut(s) | 595, 840, 1435 |
| Bsp143I | GATC | 6 cut(s) | 710, 730, 916, 985, 1112, 1298 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 770 |
| BspACI | CCGC | 1 cut(s) | 5 |
| BspANI | GGCC | 1 cut(s) | 386 |
| BspCNI | CTCAG | 2 cut(s) | 783, 891 |
| BspLI | GGNNCC | 2 cut(s) | 15, 1183 |
| BspMI | ACCTGC | 1 cut(s) | 645 |
| BspPI | GGATC | 3 cut(s) | 718, 725, 1120 |
| BspTI | CTTAAG | 1 cut(s) | 940 |
| BspTNI | GGTCTC | 1 cut(s) | 87 |
| BsrDI | GCAATG | 1 cut(s) | 147 |
| BsrFI | RCCGGY | 1 cut(s) | 345 |
| BsrI | ACTGG | 1 cut(s) | 1176 |
| BssAI | RCCGGY | 1 cut(s) | 345 |
| BssECI | CCNNGG | 5 cut(s) | 306, 666, 676, 677, 1003 |
| BssMI | GATC | 6 cut(s) | 710, 730, 916, 985, 1112, 1298 |
| BssT1I | CCWWGG | 2 cut(s) | 306, 666 |
| Bst2UI | CCWGG | 5 cut(s) | 79, 678, 842, 1005, 1110 |
| Bst4CI | ACNGT | 4 cut(s) | 183, 484, 604, 1022 |
| Bst6I | CTCTTC | 1 cut(s) | 362 |
| BstAFI | CTTAAG | 1 cut(s) | 940 |
| BstDEI | CTNAG | 4 cut(s) | 388, 587, 770, 878 |
| BstEII | GGTNACC | 1 cut(s) | 237 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 1131 |
| BstF5I | GGATG | 4 cut(s) | 100, 239, 513, 873 |
| BstH2I | RGCGCY | 1 cut(s) | 67 |
| BstHHI | GCGC | 2 cut(s) | 66, 108 |
| BstKTI | GATC | 6 cut(s) | 713, 733, 919, 988, 1115, 1301 |
| BstMAI | GTCTC | 4 cut(s) | 87, 172, 184, 1383 |
| BstMBI | GATC | 6 cut(s) | 710, 730, 916, 985, 1112, 1298 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 13, 149, 646, 867, 1363 |
| BstNI | CCWGG | 5 cut(s) | 79, 678, 842, 1005, 1110 |
| BstNSI | RCATGY | 1 cut(s) | 256 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 813 |
| BstPI | GGTNACC | 1 cut(s) | 237 |
| BstSCI | CCNGG | 5 cut(s) | 77, 676, 840, 1003, 1108 |
| BstSFI | CTRYAG | 1 cut(s) | 480 |
| BstV1I | GCAGC | 4 cut(s) | 595, 698, 988, 1319 |
| BstV2I | GAAGAC | 1 cut(s) | 255 |
| BstX2I | RGATCY | 3 cut(s) | 916, 985, 1298 |
| BstYI | RGATCY | 3 cut(s) | 916, 985, 1298 |
| BsuRI | GGCC | 1 cut(s) | 386 |
| BtsCI | GGATG | 4 cut(s) | 100, 239, 513, 873 |
| BtsI | GCAGTG | 1 cut(s) | 569 |
| BtsIMutI | CAGTG | 4 cut(s) | 188, 569, 1088, 1183 |
| BveI | ACCTGC | 1 cut(s) | 645 |
| CfoI | GCGC | 2 cut(s) | 66, 108 |
| Cfr10I | RCCGGY | 1 cut(s) | 345 |
| CseI | GACGC | 2 cut(s) | 141, 1017 |
| CsiI | ACCWGGT | 1 cut(s) | 77 |
| Csp6I | GTAC | 5 cut(s) | 199, 485, 948, 1023, 1086 |
| CspAI | ACCGGT | 1 cut(s) | 345 |
| CviAII | CATG | 2 cut(s) | 125, 253 |
| CviQI | GTAC | 5 cut(s) | 199, 485, 948, 1023, 1086 |
| DdeI | CTNAG | 4 cut(s) | 388, 587, 770, 878 |
| DpnI | GATC | 6 cut(s) | 712, 732, 918, 987, 1114, 1300 |
| DpnII | GATC | 6 cut(s) | 710, 730, 916, 985, 1112, 1298 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 434 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 434 |
| Eam1104I | CTCTTC | 1 cut(s) | 362 |
| EarI | CTCTTC | 1 cut(s) | 362 |
| Ecl136II | GAGCTC | 1 cut(s) | 593 |
| Eco130I | CCWWGG | 2 cut(s) | 306, 666 |
| Eco147I | AGGCCT | 1 cut(s) | 386 |
| Eco24I | GRGCYC | 2 cut(s) | 595, 1435 |
| Eco31I | GGTCTC | 1 cut(s) | 87 |
| Eco53kI | GAGCTC | 1 cut(s) | 593 |
| Eco91I | GGTNACC | 1 cut(s) | 237 |
| EcoICRI | GAGCTC | 1 cut(s) | 593 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 1131 |
| EcoO65I | GGTNACC | 1 cut(s) | 237 |
| EcoRI | GAATTC | 2 cut(s) | 211, 1314 |
| EcoRII | CCWGG | 5 cut(s) | 77, 676, 840, 1003, 1108 |
| EcoT14I | CCWWGG | 2 cut(s) | 306, 666 |
| EcoT38I | GRGCYC | 2 cut(s) | 595, 1435 |
| ErhI | CCWWGG | 2 cut(s) | 306, 666 |
| Esp3I | CGTCTC | 1 cut(s) | 184 |
| FaeI | CATG | 2 cut(s) | 128, 256 |
| FaqI | GGGAC | 4 cut(s) | 560, 659, 985, 1027 |
| FatI | CATG | 2 cut(s) | 124, 252 |
| FblI | GTMKAC | 2 cut(s) | 630, 964 |
| Fnu4HI | GCNGC | 5 cut(s) | 5, 584, 687, 977, 1308 |
| FokI | GGATG | 4 cut(s) | 107, 246, 500, 860 |
| FriOI | GRGCYC | 2 cut(s) | 595, 1435 |
| Fsp4HI | GCNGC | 5 cut(s) | 5, 584, 687, 977, 1308 |
| FspI | TGCGCA | 1 cut(s) | 107 |
| GlaI | GCGC | 2 cut(s) | 65, 107 |
| GluI | GCNGC | 5 cut(s) | 5, 584, 687, 977, 1308 |
| GsaI | CCCAGC | 1 cut(s) | 1323 |
| GsuI | CTGGAG | 1 cut(s) | 824 |
| HaeII | RGCGCY | 1 cut(s) | 67 |
| HaeIII | GGCC | 1 cut(s) | 386 |
| HapII | CCGG | 1 cut(s) | 346 |
| HgaI | GACGC | 2 cut(s) | 141, 1017 |
| HhaI | GCGC | 2 cut(s) | 66, 108 |
| Hin1II | CATG | 2 cut(s) | 128, 256 |
| Hin6I | GCGC | 2 cut(s) | 64, 106 |
| HinP1I | GCGC | 2 cut(s) | 64, 106 |
| HincII | GTYRAC | 3 cut(s) | 793, 965, 1032 |
| HindII | GTYRAC | 3 cut(s) | 793, 965, 1032 |
| HindIII | AAGCTT | 1 cut(s) | 26 |
| HinfI | GANTC | 7 cut(s) | 577, 610, 814, 853, 998, 1102, 1376 |
| HpaI | GTTAAC | 1 cut(s) | 793 |
| HpaII | CCGG | 1 cut(s) | 346 |
| HphI | GGTGA | 1 cut(s) | 231 |
| Hpy166II | GTNNAC | 6 cut(s) | 201, 631, 793, 965, 1032, 1088 |
| Hpy188I | TCNGA | 8 cut(s) | 217, 446, 615, 735, 750, 1015, 1298, 1336 |
| Hpy188III | TCNNGA | 8 cut(s) | 86, 223, 318, 721, 818, 850, 1151, 1410 |
| Hpy8I | GTNNAC | 6 cut(s) | 201, 631, 793, 965, 1032, 1088 |
| HpyCH4III | ACNGT | 4 cut(s) | 183, 484, 604, 1022 |
| HpyCH4V | TGCA | 6 cut(s) | 186, 363, 686, 754, 1235, 1425 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 13, 149, 646, 867, 1363 |
| HpyF3I | CTNAG | 4 cut(s) | 388, 587, 770, 878 |
| Hsp92II | CATG | 2 cut(s) | 128, 256 |
| HspAI | GCGC | 2 cut(s) | 64, 106 |
| KspAI | GTTAAC | 1 cut(s) | 793 |
| Kzo9I | GATC | 6 cut(s) | 710, 730, 916, 985, 1112, 1298 |
| LmnI | GCTCC | 5 cut(s) | 13, 61, 598, 843, 1347 |
| Lsp1109I | GCAGC | 4 cut(s) | 595, 698, 988, 1319 |
| LweI | GCATC | 2 cut(s) | 741, 1222 |
| MabI | ACCWGGT | 1 cut(s) | 77 |
| MaeIII | GTNAC | 5 cut(s) | 73, 237, 284, 536, 1282 |
| MalI | GATC | 6 cut(s) | 712, 732, 918, 987, 1114, 1300 |
| MboI | GATC | 6 cut(s) | 710, 730, 916, 985, 1112, 1298 |
| MboII | GAAGA | 7 cut(s) | 67, 260, 333, 379, 399, 748, 926 |
| MfeI | CAATTG | 1 cut(s) | 136 |
| MflI | RGATCY | 3 cut(s) | 916, 985, 1298 |
| MhlI | GDGCHC | 3 cut(s) | 595, 840, 1435 |
| MlyI | GAGTC | 3 cut(s) | 823, 1007, 1385 |
| MseI | TTAA | 3 cut(s) | 792, 921, 941 |
| MspCI | CTTAAG | 1 cut(s) | 940 |
| MspI | CCGG | 1 cut(s) | 346 |
| MspR9I | CCNGG | 5 cut(s) | 79, 678, 842, 1005, 1110 |
| MunI | CAATTG | 1 cut(s) | 136 |
| Mva1269I | GAATGC | 1 cut(s) | 688 |
| MvaI | CCWGG | 5 cut(s) | 79, 678, 842, 1005, 1110 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 13, 149, 646, 867, 1363 |
| NdeII | GATC | 6 cut(s) | 710, 730, 916, 985, 1112, 1298 |
| NlaIII | CATG | 2 cut(s) | 128, 256 |
| NlaIV | GGNNCC | 2 cut(s) | 15, 1183 |
| NmuCI | GTSAC | 1 cut(s) | 237 |
| NsbI | TGCGCA | 1 cut(s) | 107 |
| NspI | RCATGY | 1 cut(s) | 256 |
| PasI | CCCWGGG | 1 cut(s) | 677 |
| PceI | AGGCCT | 1 cut(s) | 386 |
| PctI | GAATGC | 1 cut(s) | 688 |
| PfeI | GAWTC | 4 cut(s) | 577, 610, 853, 1102 |
| PfoI | TCCNGGA | 1 cut(s) | 840 |
| PinAI | ACCGGT | 1 cut(s) | 345 |
| PkrI | GCNGC | 5 cut(s) | 6, 585, 688, 978, 1309 |
| PleI | GAGTC | 3 cut(s) | 822, 1006, 1384 |
| PpsI | GAGTC | 3 cut(s) | 822, 1006, 1384 |
| PshAI | GACNNNNGTC | 1 cut(s) | 813 |
| Psp124BI | GAGCTC | 1 cut(s) | 595 |
| Psp6I | CCWGG | 5 cut(s) | 77, 676, 840, 1003, 1108 |
| PspEI | GGTNACC | 1 cut(s) | 237 |
| PspFI | CCCAGC | 1 cut(s) | 1319 |
| PspGI | CCWGG | 5 cut(s) | 77, 676, 840, 1003, 1108 |
| PspN4I | GGNNCC | 2 cut(s) | 15, 1183 |
| PsuI | RGATCY | 3 cut(s) | 916, 985, 1298 |
| RsaI | GTAC | 5 cut(s) | 200, 486, 949, 1024, 1087 |
| RsaNI | GTAC | 5 cut(s) | 199, 485, 948, 1023, 1086 |
| SacI | GAGCTC | 1 cut(s) | 595 |
| SalI | GTCGAC | 1 cut(s) | 963 |
| SaqAI | TTAA | 3 cut(s) | 792, 921, 941 |
| SatI | GCNGC | 5 cut(s) | 5, 584, 687, 977, 1308 |
| Sau3AI | GATC | 6 cut(s) | 710, 730, 916, 985, 1112, 1298 |
| ScaI | AGTACT | 1 cut(s) | 949 |
| SchI | GAGTC | 3 cut(s) | 823, 1007, 1385 |
| ScrFI | CCNGG | 5 cut(s) | 79, 678, 842, 1005, 1110 |
| SduI | GDGCHC | 3 cut(s) | 595, 840, 1435 |
| SexAI | ACCWGGT | 1 cut(s) | 77 |
| SfaNI | GCATC | 2 cut(s) | 741, 1222 |
| SfcI | CTRYAG | 1 cut(s) | 480 |
| SmlI | CTYRAG | 3 cut(s) | 84, 719, 940 |
| SmoI | CTYRAG | 3 cut(s) | 84, 719, 940 |
| SseBI | AGGCCT | 1 cut(s) | 386 |
| SsiI | CCGC | 1 cut(s) | 5 |
| SspI | AATATT | 1 cut(s) | 41 |
| SstI | GAGCTC | 1 cut(s) | 595 |
| StuI | AGGCCT | 1 cut(s) | 386 |
| StyD4I | CCNGG | 5 cut(s) | 77, 676, 840, 1003, 1108 |
| StyI | CCWWGG | 2 cut(s) | 306, 666 |
| TaaI | ACNGT | 4 cut(s) | 183, 484, 604, 1022 |
| TaqI | TCGA | 3 cut(s) | 353, 912, 964 |
| TatI | WGTACW | 2 cut(s) | 947, 1022 |
| TauI | GCSGC | 1 cut(s) | 7 |
| TfiI | GAWTC | 4 cut(s) | 577, 610, 853, 1102 |
| Tru1I | TTAA | 3 cut(s) | 792, 921, 941 |
| Tru9I | TTAA | 3 cut(s) | 792, 921, 941 |
| TscAI | CASTG | 4 cut(s) | 188, 569, 1095, 1183 |
| TseFI | GTSAC | 1 cut(s) | 237 |
| TseI | GCWGC | 4 cut(s) | 583, 686, 976, 1307 |
| Tsp45I | GTSAC | 1 cut(s) | 237 |
| TspDTI | ATGAA | 6 cut(s) | 51, 113, 399, 590, 969, 1230 |
| TspRI | CASTG | 4 cut(s) | 188, 569, 1095, 1183 |
| Vha464I | CTTAAG | 1 cut(s) | 940 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 1131 |
| XapI | RAATTY | 5 cut(s) | 158, 211, 616, 1314, 1328 |
| XceI | RCATGY | 1 cut(s) | 256 |
| XmiI | GTMKAC | 2 cut(s) | 630, 964 |
| ZrmI | AGTACT | 1 cut(s) | 949 |