pycom13g06680
MYB Family

SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr13
OG0002009
Physical Location & Seq
Forward (+)
4393856 .. 4395772
1917 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom13g06680.3

Sequence Viewer

Length: 777 bp
ATGCGGTACAAAAGAGCAAGTTTCAAGGATCGATTTCTCAAGAAGGATGACCCAAAGATAATTGCTTTGATGCAACAAGCAGAATTGCTCAGCTCGCTGGCATTAAAAGTTAATGCAGAGAACACAGACCAGAGTCTTGAAAATGCTTGGAAGGTGCTGCAAGATTTCTTGAATCAAAGCAAAGATGGTGACATCCTCAGTTATGGAATTAATGATTTTGATTTTCAACTCGAAGATCTTAAATATCTGTTACAGGACTTAATGAGCACCACTGAAGGAAGCCGACCATCTTGGCAACATTGCAGGCAGCCTGATTTATACGATGAGTCTCCAGGAAGTTCCGAATACAGTACAGGGTCAACTCTTCTGTCCCAAACAGAATACTATCAAGTGGAACAAAATAAAGTTGAAATAGGTTCACTGAACCAGGAGATTCGACCAGGGTCACAGTCAATTCCTATTGAAGGGAAAAATGGTGTTGGTGATTGTGAGAAAGGGAATTTTTCCAAAAAGCAAGAGATATTTCCGTCGTGTGATGAAGCAACAAAAGACTATGCAGTTGTTTCTGCATTGTCAAGTACAGAGTTCAATTCTCCTATTAAAGTTACCCCATTGTTCAGATCGATCTTGGCAGCAGGAATTCCTAGCCCAAAATTTTCTGAAAGTGAAAGGAATTTCTTGCTCAAAACGCTTGGAGAGGACTCCCCCTGCCCCAACCCAAGCACCAATCCTTCACAACCGCCACCCTGCAAACGATCCCTCCTCCAAAGTCTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000278 GO:0000281 GO:0000910 GO:0000911 GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001101 GO:0001134 GO:0001135 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006275 GO:0006355 GO:0006357 GO:0006810 GO:0007049 GO:0007275 GO:0008150 GO:0009553 GO:0009554 GO:0009628 GO:0009629 GO:0009653 GO:0009719 GO:0009725 GO:0009733 GO:0009737 GO:0009791 GO:0009888 GO:0009889 GO:0009893 GO:0009914 GO:0009926 GO:0009987 GO:0010016 GO:0010033 GO:0010052 GO:0010103 GO:0010235 GO:0010374 GO:0010376 GO:0010440 GO:0010444 GO:0010468 GO:0010556 GO:0010564 GO:0010604 GO:0010638 GO:0010817 GO:0019219 GO:0019222 GO:0019953 GO:0022402 GO:0022414 GO:0022622 GO:0030104 GO:0030154 GO:0031056 GO:0031058 GO:0031060 GO:0031062 GO:0031323 GO:0031325 GO:0031326 GO:0031399 GO:0031401 GO:0032268 GO:0032270 GO:0032501 GO:0032502 GO:0032506 GO:0032875 GO:0033043 GO:0033044 GO:0033993 GO:0034293 GO:0042221 GO:0042592 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0043934 GO:0044212 GO:0044424 GO:0044464 GO:0044703 GO:0047484 GO:0048229 GO:0048236 GO:0048364 GO:0048366 GO:0048367 GO:0048468 GO:0048518 GO:0048522 GO:0048527 GO:0048528 GO:0048580 GO:0048582 GO:0048583 GO:0048584 GO:0048646 GO:0048731 GO:0048827 GO:0048856 GO:0048869 GO:0048871 GO:0048878 GO:0050789 GO:0050793 GO:0050794 GO:0050878 GO:0050891 GO:0050896 GO:0051052 GO:0051094 GO:0051128 GO:0051130 GO:0051171 GO:0051173 GO:0051179 GO:0051234 GO:0051239 GO:0051240 GO:0051246 GO:0051247 GO:0051252 GO:0051301 GO:0051321 GO:0051704 GO:0051726 GO:0060255 GO:0060918 GO:0061085 GO:0061087 GO:0061640 GO:0065007 GO:0065008 GO:0080022 GO:0080090 GO:0080134 GO:0090329 GO:0090436 GO:0090558 GO:0090626 GO:0090627 GO:0090696 GO:0090698 GO:0097159 GO:0097305 GO:0099402 GO:0140110 GO:1901000 GO:1901002 GO:1901333 GO:1901363 GO:1901700 GO:1901987 GO:1902275 GO:1902410 GO:1902584 GO:1902806 GO:1903046 GO:1903047 GO:1903506 GO:1905269 GO:2000023 GO:2000026 GO:2000037 GO:2000069 GO:2000070 GO:2000112 GO:2000280 GO:2001141 GO:2001252
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

259

Amino Acids

28.85

Weight (kDa)

4.9

Isoelectric Point (pI)

61.9

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 4, 740
AclWI GGATC 2 cut(s) 36, 750
AcsI RAATTY 4 cut(s) 499, 639, 653, 673
AcuI CTGAAG 1 cut(s) 294
AfaI GTAC 3 cut(s) 8, 352, 580
AfiI CCNNNNNNNGG 1 cut(s) 464
AgsI TTSAA 7 cut(s) 25, 140, 172, 227, 410, 464, 589
AjnI CCWGG 3 cut(s) 331, 426, 439
AluBI AGCT 1 cut(s) 93
AluI AGCT 1 cut(s) 93
Alw21I GWGCWC 1 cut(s) 269
Alw26I GTCTC 1 cut(s) 333
AlwI GGATC 2 cut(s) 36, 750
ApeKI GCWGC 3 cut(s) 157, 307, 632
ApoI RAATTY 4 cut(s) 499, 639, 653, 673
AseI ATTAAT 1 cut(s) 210
AsuHPI GGTGA 2 cut(s) 200, 494
Bbv12I GWGCWC 1 cut(s) 269
BbvI GCAGC 3 cut(s) 144, 319, 644
BccI CCATC 2 cut(s) 179, 295
BciT130I CCWGG 3 cut(s) 333, 428, 441
BcoDI GTCTC 1 cut(s) 333
BfaI CTAG 1 cut(s) 645
BglII AGATCT 1 cut(s) 235
BisI GCNGC 3 cut(s) 158, 308, 633
BlpI GCTNAGC 1 cut(s) 89
BlsI GCNGC 3 cut(s) 159, 309, 634
Bme1390I CCNGG 3 cut(s) 333, 428, 441
BmrFI CCNGG 3 cut(s) 333, 428, 441
BmsI GCATC 1 cut(s) 60
BoxI GACNNNNGTC 2 cut(s) 132, 442
BpmI CTGGAG 1 cut(s) 315
Bpu1102I GCTNAGC 1 cut(s) 89
BpuEI CTTGAG 1 cut(s) 23
Bsa29I ATCGAT 2 cut(s) 31, 623
BsaJI CCNNGG 1 cut(s) 440
BsaXI ACNNNNNCTCC 2 cut(s) 744, 774
Bsc4I CCNNNNNNNGG 1 cut(s) 464
Bse3DI GCAATG 1 cut(s) 298
BseBI CCWGG 3 cut(s) 333, 428, 441
BseCI ATCGAT 2 cut(s) 31, 623
BseDI CCNNGG 1 cut(s) 440
BseGI GGATG 2 cut(s) 52, 192
BseLI CCNNNNNNNGG 1 cut(s) 464
BseMI GCAATG 1 cut(s) 298
BseMII CTCAG 2 cut(s) 103, 211
BseRI GAGGAG 1 cut(s) 752
BseXI GCAGC 3 cut(s) 144, 319, 644
BshVI ATCGAT 2 cut(s) 31, 623
BsiHKAI GWGCWC 1 cut(s) 269
BslFI GGGAC 1 cut(s) 355
BslI CCNNNNNNNGG 1 cut(s) 464
BsmAI GTCTC 1 cut(s) 333
BsmFI GGGAC 1 cut(s) 355
Bsp1286I GDGCHC 1 cut(s) 269
Bsp143I GATC 5 cut(s) 28, 235, 620, 624, 755
Bsp1720I GCTNAGC 1 cut(s) 89
BspACI CCGC 2 cut(s) 4, 740
BspCNI CTCAG 2 cut(s) 102, 210
BspDI ATCGAT 2 cut(s) 31, 623
BspPI GGATC 2 cut(s) 36, 750
BsrDI GCAATG 1 cut(s) 298
BssECI CCNNGG 1 cut(s) 440
BssMI GATC 5 cut(s) 28, 235, 620, 624, 755
Bst2UI CCWGG 3 cut(s) 333, 428, 441
Bst4CI ACNGT 2 cut(s) 350, 450
Bst6I CTCTTC 1 cut(s) 369
BstC8I GCNNGC 3 cut(s) 95, 99, 305
BstDEI CTNAG 2 cut(s) 89, 197
BstENI CCTNNNNNAGG 1 cut(s) 462
BstF5I GGATG 2 cut(s) 52, 192
BstKTI GATC 5 cut(s) 31, 238, 623, 627, 758
BstMAI GTCTC 1 cut(s) 333
BstMBI GATC 5 cut(s) 28, 235, 620, 624, 755
BstMWI GCNNNNNNNGC 2 cut(s) 94, 688
BstNI CCWGG 3 cut(s) 333, 428, 441
BstPAI GACNNNNGTC 2 cut(s) 132, 442
BstSCI CCNGG 3 cut(s) 331, 426, 439
BstV1I GCAGC 3 cut(s) 144, 319, 644
BstX2I RGATCY 1 cut(s) 235
BstYI RGATCY 1 cut(s) 235
Bsu15I ATCGAT 2 cut(s) 31, 623
BsuTUI ATCGAT 2 cut(s) 31, 623
BtsCI GGATG 2 cut(s) 52, 192
BtsIMutI CAGTG 2 cut(s) 270, 419
Cac8I GCNNGC 3 cut(s) 95, 99, 305
ClaI ATCGAT 2 cut(s) 31, 623
Csp6I GTAC 3 cut(s) 7, 351, 579
CviJI RGCY 4 cut(s) 93, 282, 310, 648
CviKI_1 RGCY 4 cut(s) 93, 282, 310, 648
CviQI GTAC 3 cut(s) 7, 351, 579
DdeI CTNAG 2 cut(s) 89, 197
DpnI GATC 5 cut(s) 30, 237, 622, 626, 757
DpnII GATC 5 cut(s) 28, 235, 620, 624, 755
Eam1104I CTCTTC 1 cut(s) 369
EarI CTCTTC 1 cut(s) 369
Eco57I CTGAAG 1 cut(s) 294
EcoNI CCTNNNNNAGG 1 cut(s) 462
EcoRI GAATTC 1 cut(s) 639
EcoRII CCWGG 3 cut(s) 331, 426, 439
FaiI YATR 4 cut(s) 204, 319, 555, 775
FaqI GGGAC 1 cut(s) 355
Fnu4HI GCNGC 3 cut(s) 158, 308, 633
FokI GGATG 2 cut(s) 59, 179
Fsp4HI GCNGC 3 cut(s) 158, 308, 633
FspBI CTAG 1 cut(s) 645
GluI GCNGC 3 cut(s) 158, 308, 633
GsuI CTGGAG 1 cut(s) 315
HincII GTYRAC 1 cut(s) 360
HindII GTYRAC 1 cut(s) 360
HinfI GANTC 5 cut(s) 133, 172, 326, 433, 701
HphI GGTGA 2 cut(s) 200, 494
Hpy166II GTNNAC 2 cut(s) 360, 419
Hpy188I TCNGA 3 cut(s) 343, 620, 661
Hpy188III TCNNGA 3 cut(s) 40, 137, 169
Hpy8I GTNNAC 2 cut(s) 360, 419
Hpy99I CGWCG 1 cut(s) 532
HpyAV CCTTC 5 cut(s) 37, 145, 269, 458, 741
HpyCH4III ACNGT 2 cut(s) 350, 450
HpyCH4V TGCA 7 cut(s) 73, 116, 160, 303, 557, 569, 750
HpyF10VI GCNNNNNNNGC 2 cut(s) 94, 688
HpyF3I CTNAG 2 cut(s) 89, 197
Kzo9I GATC 5 cut(s) 28, 235, 620, 624, 755
Lsp1109I GCAGC 3 cut(s) 144, 319, 644
LweI GCATC 1 cut(s) 60
MaeI CTAG 1 cut(s) 645
MaeIII GTNAC 4 cut(s) 188, 249, 444, 604
MalI GATC 5 cut(s) 30, 237, 622, 626, 757
MboI GATC 5 cut(s) 28, 235, 620, 624, 755
MboII GAAGA 2 cut(s) 245, 356
MflI RGATCY 1 cut(s) 235
MhlI GDGCHC 1 cut(s) 269
MluCI AATT 9 cut(s) 60, 83, 207, 453, 499, 589, 639, 653, 673
MlyI GAGTC 3 cut(s) 142, 335, 695
MnlI CCTC 4 cut(s) 206, 691, 770, 773
MseI TTAA 6 cut(s) 104, 111, 210, 240, 260, 600
MspR9I CCNGG 3 cut(s) 333, 428, 441
MvaI CCWGG 3 cut(s) 333, 428, 441
MwoI GCNNNNNNNGC 2 cut(s) 94, 688
NdeII GATC 5 cut(s) 28, 235, 620, 624, 755
NmuCI GTSAC 2 cut(s) 188, 444
PfeI GAWTC 2 cut(s) 172, 433
PfoI TCCNGGA 1 cut(s) 331
PkrI GCNGC 3 cut(s) 159, 309, 634
PleI GAGTC 3 cut(s) 141, 334, 695
PpsI GAGTC 3 cut(s) 141, 334, 695
PshAI GACNNNNGTC 2 cut(s) 132, 442
PshBI ATTAAT 1 cut(s) 210
Psp6I CCWGG 3 cut(s) 331, 426, 439
PspGI CCWGG 3 cut(s) 331, 426, 439
PsuI RGATCY 1 cut(s) 235
RsaI GTAC 3 cut(s) 8, 352, 580
RsaNI GTAC 3 cut(s) 7, 351, 579
SaqAI TTAA 6 cut(s) 104, 111, 210, 240, 260, 600
SatI GCNGC 3 cut(s) 158, 308, 633
Sau3AI GATC 5 cut(s) 28, 235, 620, 624, 755
SchI GAGTC 3 cut(s) 142, 335, 695
ScrFI CCNGG 3 cut(s) 333, 428, 441
SduI GDGCHC 1 cut(s) 269
SetI ASST 3 cut(s) 95, 156, 418
SfaNI GCATC 1 cut(s) 60
SmlI CTYRAG 1 cut(s) 38
SmoI CTYRAG 1 cut(s) 38
Sse9I AATT 9 cut(s) 60, 83, 207, 453, 499, 589, 639, 653, 673
SsiI CCGC 2 cut(s) 4, 740
SspMI CTAG 1 cut(s) 645
StyD4I CCNGG 3 cut(s) 331, 426, 439
TaaI ACNGT 2 cut(s) 350, 450
TaqI TCGA 4 cut(s) 31, 231, 436, 623
TasI AATT 9 cut(s) 60, 83, 207, 453, 499, 589, 639, 653, 673
TatI WGTACW 2 cut(s) 350, 578
TfiI GAWTC 2 cut(s) 172, 433
Tru1I TTAA 6 cut(s) 104, 111, 210, 240, 260, 600
Tru9I TTAA 6 cut(s) 104, 111, 210, 240, 260, 600
TscAI CASTG 2 cut(s) 277, 426
TseFI GTSAC 2 cut(s) 188, 444
TseI GCWGC 3 cut(s) 157, 307, 632
Tsp45I GTSAC 2 cut(s) 188, 444
TspDTI ATGAA 1 cut(s) 552
TspGWI ACGGA 1 cut(s) 516
TspRI CASTG 2 cut(s) 277, 426
VspI ATTAAT 1 cut(s) 210
XagI CCTNNNNNAGG 1 cut(s) 462
XapI RAATTY 4 cut(s) 499, 639, 653, 673
XspI CTAG 1 cut(s) 645
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.