Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr16

Orthogroup ID

OG0002009

Physical Location & Seq

Genomic Coordinates Forward (+)

4280986 .. 4281900

Gene Structure 915 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom16g06610.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 303 bp

ATGATGTTGGTGATTGTGAGAAAGGGATTGTTTCCGAAAAGCAAGAGATATTTCCATCATGTGATGAAGCAACAAAAGATTACGCAGTTGTTTCTGTGTCGTCAAATACAGAGTTCACTTCTCCTATTAAAGTTACCCCATTGTTCAGATCGTTGTGCAGCAGGAATTCCTAGCCCAAAATTGTCTGAAAGTGAGAGGAATTTCTTGCTCAAAACGCTTGGAGAGGACTCCCCCTGCCCCATCCCAAGCACCAATCCTTCACAACCGCCACCGTGCAAACGATCCCTCCTCCAAAGTCTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000278 GO:0000281 GO:0000910 GO:0000911 GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001101 GO:0001134 GO:0001135 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006275 GO:0006355 GO:0006357 GO:0006810 GO:0007049 GO:0007275 GO:0008150 GO:0009553 GO:0009554 GO:0009628 GO:0009629 GO:0009653 GO:0009719 GO:0009725 GO:0009733 GO:0009737 GO:0009791 GO:0009888 GO:0009889 GO:0009893 GO:0009914 GO:0009926 GO:0009987 GO:0010016 GO:0010033 GO:0010052 GO:0010103 GO:0010235 GO:0010374 GO:0010376 GO:0010440 GO:0010444 GO:0010468 GO:0010556 GO:0010564 GO:0010604 GO:0010638 GO:0010817 GO:0019219 GO:0019222 GO:0019953 GO:0022402 GO:0022414 GO:0022622 GO:0030104 GO:0030154 GO:0031056 GO:0031058 GO:0031060 GO:0031062 GO:0031323 GO:0031325 GO:0031326 GO:0031399 GO:0031401 GO:0032268 GO:0032270 GO:0032501 GO:0032502 GO:0032506 GO:0032875 GO:0033043 GO:0033044 GO:0033993 GO:0034293 GO:0042221 GO:0042592 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0043934 GO:0044212 GO:0044424 GO:0044464 GO:0044703 GO:0047484 GO:0048229 GO:0048236 GO:0048364 GO:0048366 GO:0048367 GO:0048468 GO:0048518 GO:0048522 GO:0048527 GO:0048528 GO:0048580 GO:0048582 GO:0048583 GO:0048584 GO:0048646 GO:0048731 GO:0048827 GO:0048856 GO:0048869 GO:0048871 GO:0048878 GO:0050789 GO:0050793 GO:0050794 GO:0050878 GO:0050891 GO:0050896 GO:0051052 GO:0051094 GO:0051128 GO:0051130 GO:0051171 GO:0051173 GO:0051179 GO:0051234 GO:0051239 GO:0051240 GO:0051246 GO:0051247 GO:0051252 GO:0051301 GO:0051321 GO:0051704 GO:0051726 GO:0060255 GO:0060918 GO:0061085 GO:0061087 GO:0061640 GO:0065007 GO:0065008 GO:0080022 GO:0080090 GO:0080134 GO:0090329 GO:0090436 GO:0090558 GO:0090626 GO:0090627 GO:0090696 GO:0090698 GO:0097159 GO:0097305 GO:0099402 GO:0140110 GO:1901000 GO:1901002 GO:1901333 GO:1901363 GO:1901700 GO:1901987 GO:1902275 GO:1902410 GO:1902584 GO:1902806 GO:1903046 GO:1903047 GO:1903506 GO:1905269 GO:2000023 GO:2000026 GO:2000037 GO:2000069 GO:2000070 GO:2000112 GO:2000280 GO:2001141 GO:2001252

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

101

Amino Acids

11.33

Weight (kDa)

9.91

Isoelectric Point (pI)

64.44

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002009)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G14350 AT1G14350 AT1G14350 AT1G14350 AT2G02820 AT2G02820 AT2G02820
fragaria_vesca	FvH4_4g31660 FvH4_4g31660 FvH4_4g31660 FvH4_4g31660 FvH4_4g31660 FvH4_4g31660
malus_domestica	MD13G1075000.v1.1 MD16G1076100.v1.1
prunus_persica	Prupe.1G271100_v2.0.a1 Prupe.1G271100_v2.0.a1 Prupe.1G271100_v2.0.a1 Prupe.1G271100_v2.0.a1 Prupe.1G271100_v2.0.a1 Prupe.1G271100_v2.0.a1 Prupe.1G271100_v2.0.a1 Prupe.1G271100_v2.0.a1 Prupe.1G271100_v2.0.a1 Prupe.1G271100_v2.0.a1 Prupe.1G271100_v2.0.a1 Prupe.1G271100_v2.0.a1 Prupe.1G271100_v2.0.a1 Prupe.1G271100_v2.0.a1 Prupe.1G271100_v2.0.a1 Prupe.1G271100_v2.0.a1
pyrus_communis	pycom13g06680 pycom16g06610
rosa_chinensis	RchiOBHm_Chr4g0440161
rosa_laevigata	RLG00000006200
rosa_multiflora	Rmu_co8051018.1_g000001
rosa_roxburghii	Rroxscaffold_5G00381090
rosa_rugosa	Rorug04G0324900 Rorug04G0324900 Rorug04G0324900
rosa_samantha	Rh4AG375700 Rh4BG388200 Rh4CG402800 Rh4DG382400
rosa_wichuraiana	Rw4G032150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	266
AclWI	GGATC	1 cut(s)	276
AcsI	RAATTY	2 cut(s)	165, 199
AlwI	GGATC	1 cut(s)	276
ApeKI	GCWGC	1 cut(s)	158
ApoI	RAATTY	2 cut(s)	165, 199
AsuHPI	GGTGA	1 cut(s)	22
BbvI	GCAGC	1 cut(s)	170
BccI	CCATC	2 cut(s)	63, 248
BfaI	CTAG	1 cut(s)	171
BfmI	CTRYAG	1 cut(s)	299
BisI	GCNGC	1 cut(s)	159
BlsI	GCNGC	1 cut(s)	160
BsaXI	ACNNNNNCTCC	2 cut(s)	270, 300
BseGI	GGATG	1 cut(s)	240
BseRI	GAGGAG	1 cut(s)	278
BseXI	GCAGC	1 cut(s)	170
BsgI	GTGCAG	1 cut(s)	177
Bsp143I	GATC	2 cut(s)	148, 281
BspACI	CCGC	1 cut(s)	266
BspPI	GGATC	1 cut(s)	276
BssMI	GATC	2 cut(s)	148, 281
Bst4CI	ACNGT	1 cut(s)	273
BstF5I	GGATG	1 cut(s)	240
BstKTI	GATC	2 cut(s)	151, 284
BstMBI	GATC	2 cut(s)	148, 281
BstMWI	GCNNNNNNNGC	1 cut(s)	214
BstSFI	CTRYAG	1 cut(s)	299
BstV1I	GCAGC	1 cut(s)	170
BtsCI	GGATG	1 cut(s)	240
CviAII	CATG	1 cut(s)	59
CviJI	RGCY	1 cut(s)	174
CviKI_1	RGCY	1 cut(s)	174
DpnI	GATC	2 cut(s)	150, 283
DpnII	GATC	2 cut(s)	148, 281
EcoRI	GAATTC	1 cut(s)	165
FaeI	CATG	1 cut(s)	62
FaiI	YATR	2 cut(s)	60, 301
FatI	CATG	1 cut(s)	58
Fnu4HI	GCNGC	1 cut(s)	159
FokI	GGATG	1 cut(s)	227
Fsp4HI	GCNGC	1 cut(s)	159
FspBI	CTAG	1 cut(s)	171
GluI	GCNGC	1 cut(s)	159
Hin1II	CATG	1 cut(s)	62
HinfI	GANTC	1 cut(s)	227
HphI	GGTGA	1 cut(s)	22
Hpy166II	GTNNAC	1 cut(s)	116
Hpy188I	TCNGA	3 cut(s)	36, 148, 187
Hpy8I	GTNNAC	1 cut(s)	116
HpyAV	CCTTC	1 cut(s)	267
HpyCH4III	ACNGT	1 cut(s)	273
HpyCH4V	TGCA	2 cut(s)	158, 276
HpyF10VI	GCNNNNNNNGC	1 cut(s)	214
Hsp92II	CATG	1 cut(s)	62
Kzo9I	GATC	2 cut(s)	148, 281
LpnPI	CCDG	2 cut(s)	147, 247
Lsp1109I	GCAGC	1 cut(s)	170
MaeI	CTAG	1 cut(s)	171
MaeIII	GTNAC	1 cut(s)	132
MalI	GATC	2 cut(s)	150, 283
MboI	GATC	2 cut(s)	148, 281
MluCI	AATT	3 cut(s)	165, 179, 199
MlyI	GAGTC	1 cut(s)	221
MnlI	CCTC	4 cut(s)	189, 217, 296, 299
MseI	TTAA	1 cut(s)	128
MwoI	GCNNNNNNNGC	1 cut(s)	214
NdeII	GATC	2 cut(s)	148, 281
NlaIII	CATG	1 cut(s)	62
PkrI	GCNGC	1 cut(s)	160
PleI	GAGTC	1 cut(s)	221
PpsI	GAGTC	1 cut(s)	221
SaqAI	TTAA	1 cut(s)	128
SatI	GCNGC	1 cut(s)	159
Sau3AI	GATC	2 cut(s)	148, 281
SchI	GAGTC	1 cut(s)	221
SfcI	CTRYAG	1 cut(s)	299
SgeI	CNNG	9 cut(s)	55, 71, 174, 183, 217, 230, 246, 258, 285
Sse9I	AATT	3 cut(s)	165, 179, 199
SsiI	CCGC	1 cut(s)	266
SspMI	CTAG	1 cut(s)	171
TaaI	ACNGT	1 cut(s)	273
TasI	AATT	3 cut(s)	165, 179, 199
Tru1I	TTAA	1 cut(s)	128
Tru9I	TTAA	1 cut(s)	128
TseI	GCWGC	1 cut(s)	158
TspDTI	ATGAA	1 cut(s)	80
XapI	RAATTY	2 cut(s)	165, 199
XspI	CTAG	1 cut(s)	171

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.