Rmu_co8051018.1_g000001
MYB Family

Transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8051018.1
OG0002009
Physical Location & Seq
Reverse (-)
1 .. 517
517 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8051018.1_g000001.1.cds

Sequence Viewer

Length: 231 bp
ctgcttgttctttgtctgagattggttttctcacatgggtttggtgacttgcaggaggatgatacactgcgagaacaaattagcattcatggaacggagaactgggctattattgcgtctaaattcaaggacaaaacgactagacagtgcaggagaagatggtacacatatttgaactcggacttcaagaagggaggatggtcaccagaggaagacctgcttttatgtgag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000278 GO:0000281 GO:0000910 GO:0000911 GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001101 GO:0001134 GO:0001135 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006275 GO:0006355 GO:0006357 GO:0006810 GO:0007049 GO:0007275 GO:0008150 GO:0009553 GO:0009554 GO:0009628 GO:0009629 GO:0009653 GO:0009719 GO:0009725 GO:0009733 GO:0009737 GO:0009791 GO:0009888 GO:0009889 GO:0009893 GO:0009914 GO:0009926 GO:0009987 GO:0010016 GO:0010033 GO:0010052 GO:0010103 GO:0010235 GO:0010374 GO:0010376 GO:0010440 GO:0010444 GO:0010468 GO:0010556 GO:0010564 GO:0010604 GO:0010638 GO:0010817 GO:0019219 GO:0019222 GO:0019953 GO:0022402 GO:0022414 GO:0022622 GO:0030104 GO:0030154 GO:0031056 GO:0031058 GO:0031060 GO:0031062 GO:0031323 GO:0031325 GO:0031326 GO:0031399 GO:0031401 GO:0032268 GO:0032270 GO:0032501 GO:0032502 GO:0032506 GO:0032875 GO:0033043 GO:0033044 GO:0033993 GO:0034293 GO:0042221 GO:0042592 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0043934 GO:0044212 GO:0044424 GO:0044464 GO:0044703 GO:0047484 GO:0048229 GO:0048236 GO:0048364 GO:0048366 GO:0048367 GO:0048468 GO:0048518 GO:0048522 GO:0048527 GO:0048528 GO:0048580 GO:0048582 GO:0048583 GO:0048584 GO:0048646 GO:0048731 GO:0048827 GO:0048856 GO:0048869 GO:0048871 GO:0048878 GO:0050789 GO:0050793 GO:0050794 GO:0050878 GO:0050891 GO:0050896 GO:0051052 GO:0051094 GO:0051128 GO:0051130 GO:0051171 GO:0051173 GO:0051179 GO:0051234 GO:0051239 GO:0051240 GO:0051246 GO:0051247 GO:0051252 GO:0051301 GO:0051321 GO:0051704 GO:0051726 GO:0060255 GO:0060918 GO:0061085 GO:0061087 GO:0061640 GO:0065007 GO:0065008 GO:0080022 GO:0080090 GO:0080134 GO:0090329 GO:0090436 GO:0090558 GO:0090626 GO:0090627 GO:0090696 GO:0090698 GO:0097159 GO:0097305 GO:0099402 GO:0140110 GO:1901000 GO:1901002 GO:1901333 GO:1901363 GO:1901700 GO:1901987 GO:1902275 GO:1902410 GO:1902584 GO:1902806 GO:1903046 GO:1903047 GO:1903506 GO:1905269 GO:2000023 GO:2000026 GO:2000037 GO:2000069 GO:2000070 GO:2000112 GO:2000280 GO:2001141 GO:2001252
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

77

Amino Acids

9.09

Weight (kDa)

6.13

Isoelectric Point (pI)

57.72

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 225
AcsI RAATTY 1 cut(s) 122
AfaI GTAC 1 cut(s) 164
AgsI TTSAA 3 cut(s) 127, 175, 187
ApoI RAATTY 1 cut(s) 122
AsuHPI GGTGA 2 cut(s) 56, 195
BbsI GAAGAC 1 cut(s) 219
BccI CCATC 2 cut(s) 153, 192
BfaI CTAG 1 cut(s) 141
BfuAI ACCTGC 1 cut(s) 225
BmrI ACTGGG 1 cut(s) 112
BmuI ACTGGG 1 cut(s) 112
BpiI GAAGAC 1 cut(s) 219
Bse1I ACTGG 1 cut(s) 107
BseGI GGATG 2 cut(s) 64, 203
BseMII CTCAG 1 cut(s) 8
BseNI ACTGG 1 cut(s) 107
BsgI GTGCAG 1 cut(s) 169
BsmI GAATGC 1 cut(s) 84
BspCNI CTCAG 1 cut(s) 9
BspMI ACCTGC 1 cut(s) 225
BsrI ACTGG 1 cut(s) 107
Bst4CI ACNGT 1 cut(s) 147
BstDEI CTNAG 1 cut(s) 17
BstEII GGTNACC 1 cut(s) 201
BstF5I GGATG 2 cut(s) 64, 203
BstMWI GCNNNNNNNGC 1 cut(s) 113
BstPI GGTNACC 1 cut(s) 201
BstV2I GAAGAC 1 cut(s) 219
BtsCI GGATG 2 cut(s) 64, 203
BtsI GCAGTG 1 cut(s) 65
BtsIMutI CAGTG 2 cut(s) 65, 152
BveI ACCTGC 1 cut(s) 225
CseI GACGC 1 cut(s) 105
Csp6I GTAC 1 cut(s) 163
CviAII CATG 2 cut(s) 35, 89
CviJI RGCY 1 cut(s) 107
CviKI_1 RGCY 1 cut(s) 107
CviQI GTAC 1 cut(s) 163
DdeI CTNAG 1 cut(s) 17
Eco91I GGTNACC 1 cut(s) 201
EcoO65I GGTNACC 1 cut(s) 201
FaeI CATG 2 cut(s) 38, 92
FaiI YATR 4 cut(s) 36, 90, 169, 226
FalI AAGNNNNNCTT 1 cut(s) 204
FatI CATG 2 cut(s) 34, 88
FokI GGATG 2 cut(s) 71, 210
FspBI CTAG 1 cut(s) 141
HgaI GACGC 1 cut(s) 105
Hin1II CATG 2 cut(s) 38, 92
HphI GGTGA 2 cut(s) 56, 195
Hpy166II GTNNAC 1 cut(s) 165
Hpy188I TCNGA 2 cut(s) 18, 181
Hpy188III TCNNGA 1 cut(s) 187
Hpy8I GTNNAC 1 cut(s) 165
HpyAV CCTTC 1 cut(s) 184
HpyCH4III ACNGT 1 cut(s) 147
HpyCH4V TGCA 2 cut(s) 52, 150
HpyF10VI GCNNNNNNNGC 1 cut(s) 113
HpyF3I CTNAG 1 cut(s) 17
Hsp92II CATG 2 cut(s) 38, 92
LpnPI CCDG 4 cut(s) 38, 88, 136, 219
MaeI CTAG 1 cut(s) 141
MaeIII GTNAC 2 cut(s) 44, 201
MboII GAAGA 2 cut(s) 168, 224
MluCI AATT 2 cut(s) 78, 122
MnlI CCTC 3 cut(s) 49, 188, 202
Mva1269I GAATGC 1 cut(s) 84
MwoI GCNNNNNNNGC 1 cut(s) 113
NlaIII CATG 2 cut(s) 38, 92
NmuCI GTSAC 2 cut(s) 44, 201
PctI GAATGC 1 cut(s) 84
PspEI GGTNACC 1 cut(s) 201
RsaI GTAC 1 cut(s) 164
RsaNI GTAC 1 cut(s) 163
SetI ASST 1 cut(s) 219
Sse9I AATT 2 cut(s) 78, 122
SspMI CTAG 1 cut(s) 141
TaaI ACNGT 1 cut(s) 147
TasI AATT 2 cut(s) 78, 122
TscAI CASTG 2 cut(s) 72, 152
TseFI GTSAC 2 cut(s) 44, 201
Tsp45I GTSAC 2 cut(s) 44, 201
TspDTI ATGAA 1 cut(s) 77
TspGWI ACGGA 1 cut(s) 110
TspRI CASTG 2 cut(s) 72, 152
XapI RAATTY 1 cut(s) 122
XspI CTAG 1 cut(s) 141
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.