Prupe.1G295400_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0017656
Physical Location & Seq
Reverse (-)
29221950 .. 29222697
748 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G295400.1

Sequence Viewer

Length: 444 bp
ATGAAGTCTTCTAGTTATTGCTTGCTACTGTTCGTGCTTGTTTCTGCTGCAAGCATATGGGGTATATATGATTCATTCTATAATTTATATATATACCTGCAGGGCCAGGATATTGATGAAGTGGAGGACAAGAAGATAGGAGGAAGGAAAATGGGTGCTATCCACAAGGTGGTGAGGTTAGAGAAGGAAGTTAAAGTAGAAGTGGATGCTGTGAGTGGAAGGAAGAGCAACTCAAAGACGGCTTCAAGCAGCAGCTCAGAGCTTGAAGGAAAATCACCACGTCGCAGTCATGAAGCGAATACGATTGGCAATGGAGAAAGTGGACAAAGTAGCAGTGTAAAAGGAGGTGTTGATCATGATCATAATGATGAATATTCTGCAGGTTTTGTAGCTTTTAGTCAAGATTACCATTCACCAAGGCACCACCCTCCTAAGAATAACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

148

Amino Acids

16.16

Weight (kDa)

6.65

Isoelectric Point (pI)

52.54

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017656)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g29040
malus_domestica MD13G1055500.v1.1
prunus_persica Prupe.1G295400_v2.0.a1
rosa_laevigata RLG00000006465
rosa_multiflora Rmu_ssc0000006.1_g000002
rosa_roxburghii Rroxscaffold_5G00378210
rosa_rugosa Rorug04G0298300
rosa_samantha Rh4AG353200 Rh4BG362800 Rh4CG377000 Rh4DG356700
rosa_wichuraiana Rw4G030940

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 105, 371
AccB1I GGYRCC 1 cut(s) 420
AccB7I CCANNNNNTGG 1 cut(s) 169
AdeI CACNNNGTG 1 cut(s) 169
AfiI CCNNNNNNNGG 1 cut(s) 169
AgsI TTSAA 2 cut(s) 246, 266
AjiI CACGTC 1 cut(s) 281
AjnI CCWGG 1 cut(s) 105
AluBI AGCT 3 cut(s) 255, 262, 392
AluI AGCT 3 cut(s) 255, 262, 392
AoxI GGCC 1 cut(s) 103
ApeKI GCWGC 3 cut(s) 47, 249, 252
AspS9I GGNCC 1 cut(s) 103
AsuHPI GGTGA 3 cut(s) 184, 267, 405
BanI GGYRCC 1 cut(s) 420
BbvI GCAGC 3 cut(s) 34, 261, 264
BceAI ACGGC 1 cut(s) 255
BciT130I CCWGG 1 cut(s) 107
BclI TGATCA 2 cut(s) 352, 358
BfaI CTAG 2 cut(s) 12, 442
BfmI CTRYAG 2 cut(s) 98, 378
BfuAI ACCTGC 2 cut(s) 105, 371
BisI GCNGC 3 cut(s) 48, 250, 253
BlsI GCNGC 3 cut(s) 49, 251, 254
Bme1390I CCNGG 1 cut(s) 107
BmgBI CACGTC 1 cut(s) 281
BmgT120I GGNCC 1 cut(s) 103
BmiI GGNNCC 1 cut(s) 422
BmrFI CCNGG 1 cut(s) 107
BmsI GCATC 1 cut(s) 196
BsaBI GATNNNNATC 1 cut(s) 357
BsaJI CCNNGG 1 cut(s) 416
Bsc4I CCNNNNNNNGG 1 cut(s) 169
Bse3DI GCAATG 1 cut(s) 316
Bse8I GATNNNNATC 1 cut(s) 357
BseBI CCWGG 1 cut(s) 107
BseDI CCNNGG 1 cut(s) 416
BseGI GGATG 1 cut(s) 211
BseJI GATNNNNATC 1 cut(s) 357
BseLI CCNNNNNNNGG 1 cut(s) 169
BseMI GCAATG 1 cut(s) 316
BseMII CTCAG 1 cut(s) 270
BseXI GCAGC 3 cut(s) 34, 261, 264
BshFI GGCC 1 cut(s) 105
BshNI GGYRCC 1 cut(s) 420
BslI CCNNNNNNNGG 1 cut(s) 169
BsnI GGCC 1 cut(s) 105
Bsp143I GATC 2 cut(s) 352, 358
BspANI GGCC 1 cut(s) 105
BspCNI CTCAG 1 cut(s) 269
BspHI TCATGA 2 cut(s) 289, 355
BspLI GGNNCC 1 cut(s) 422
BspMAI CTGCAG 2 cut(s) 102, 382
BspMI ACCTGC 2 cut(s) 105, 371
BspQI GCTCTTC 1 cut(s) 218
BspT107I GGYRCC 1 cut(s) 420
BsrDI GCAATG 1 cut(s) 316
BssECI CCNNGG 1 cut(s) 416
BssMI GATC 2 cut(s) 352, 358
BssT1I CCWWGG 1 cut(s) 416
Bst2UI CCWGG 1 cut(s) 107
Bst4CI ACNGT 1 cut(s) 30
Bst6I CTCTTC 1 cut(s) 218
BstC8I GCNNGC 2 cut(s) 23, 52
BstDEI CTNAG 2 cut(s) 256, 432
BstF5I GGATG 1 cut(s) 211
BstKTI GATC 2 cut(s) 355, 361
BstMBI GATC 2 cut(s) 352, 358
BstNI CCWGG 1 cut(s) 107
BstSCI CCNGG 1 cut(s) 105
BstSFI CTRYAG 2 cut(s) 98, 378
BstV1I GCAGC 3 cut(s) 34, 261, 264
BsuRI GGCC 1 cut(s) 105
BtrI CACGTC 1 cut(s) 281
BtsCI GGATG 1 cut(s) 211
BtsI GCAGTG 1 cut(s) 340
BtsIMutI CAGTG 1 cut(s) 340
BveI ACCTGC 2 cut(s) 105, 371
Cac8I GCNNGC 2 cut(s) 23, 52
CciI TCATGA 2 cut(s) 289, 355
Cfr13I GGNCC 1 cut(s) 103
CviAII CATG 2 cut(s) 290, 356
CviJI RGCY 5 cut(s) 105, 242, 255, 262, 392
CviKI_1 RGCY 5 cut(s) 105, 242, 255, 262, 392
DdeI CTNAG 2 cut(s) 256, 432
DpnI GATC 2 cut(s) 354, 360
DpnII GATC 2 cut(s) 352, 358
DraIII CACNNNGTG 1 cut(s) 169
Eam1104I CTCTTC 1 cut(s) 218
EarI CTCTTC 1 cut(s) 218
Eco130I CCWWGG 1 cut(s) 416
EcoRII CCWGG 1 cut(s) 105
EcoT14I CCWWGG 1 cut(s) 416
ErhI CCWWGG 1 cut(s) 416
FaeI CATG 2 cut(s) 293, 359
FatI CATG 2 cut(s) 289, 355
FauNDI CATATG 1 cut(s) 56
FbaI TGATCA 2 cut(s) 352, 358
Fnu4HI GCNGC 3 cut(s) 48, 250, 253
FokI GGATG 1 cut(s) 218
Fsp4HI GCNGC 3 cut(s) 48, 250, 253
FspBI CTAG 2 cut(s) 12, 442
GluI GCNGC 3 cut(s) 48, 250, 253
HaeIII GGCC 1 cut(s) 105
Hin1II CATG 2 cut(s) 293, 359
HinfI GANTC 1 cut(s) 71
HphI GGTGA 3 cut(s) 184, 267, 405
Hpy166II GTNNAC 1 cut(s) 323
Hpy188I TCNGA 1 cut(s) 259
Hpy188III TCNNGA 3 cut(s) 290, 356, 401
Hpy8I GTNNAC 1 cut(s) 323
Hpy99I CGWCG 1 cut(s) 285
HpyAV CCTTC 4 cut(s) 138, 178, 213, 260
HpyCH4III ACNGT 1 cut(s) 30
HpyCH4IV ACGT 1 cut(s) 280
HpyCH4V TGCA 3 cut(s) 50, 100, 380
HpyF3I CTNAG 2 cut(s) 256, 432
HpySE526I ACGT 1 cut(s) 280
Hsp92II CATG 2 cut(s) 293, 359
Ksp22I TGATCA 2 cut(s) 352, 358
Kzo9I GATC 2 cut(s) 352, 358
LguI GCTCTTC 1 cut(s) 218
LpnPI CCDG 5 cut(s) 86, 92, 110, 119, 366
Lsp1109I GCAGC 3 cut(s) 34, 261, 264
LweI GCATC 1 cut(s) 196
MaeI CTAG 2 cut(s) 12, 442
MaeII ACGT 1 cut(s) 280
MalI GATC 2 cut(s) 354, 360
MboI GATC 2 cut(s) 352, 358
MboII GAAGA 2 cut(s) 145, 235
MluCI AATT 1 cut(s) 82
MnlI CCTC 5 cut(s) 118, 134, 168, 338, 438
MseI TTAA 1 cut(s) 192
MslI CAYNNNNRTG 1 cut(s) 366
MspR9I CCNGG 1 cut(s) 107
MvaI CCWGG 1 cut(s) 107
NdeI CATATG 1 cut(s) 56
NdeII GATC 2 cut(s) 352, 358
NlaIII CATG 2 cut(s) 293, 359
NlaIV GGNNCC 1 cut(s) 422
PagI TCATGA 2 cut(s) 289, 355
PciSI GCTCTTC 1 cut(s) 218
PfeI GAWTC 1 cut(s) 71
PflMI CCANNNNNTGG 1 cut(s) 169
PkrI GCNGC 3 cut(s) 49, 251, 254
Psp6I CCWGG 1 cut(s) 105
PspGI CCWGG 1 cut(s) 105
PspN4I GGNNCC 1 cut(s) 422
PspPI GGNCC 1 cut(s) 103
PstI CTGCAG 2 cut(s) 102, 382
RseI CAYNNNNRTG 1 cut(s) 366
SapI GCTCTTC 1 cut(s) 218
SaqAI TTAA 1 cut(s) 192
SatI GCNGC 3 cut(s) 48, 250, 253
Sau3AI GATC 2 cut(s) 352, 358
Sau96I GGNCC 1 cut(s) 103
SbfI CCTGCAGG 1 cut(s) 102
ScrFI CCNGG 1 cut(s) 107
SdaI CCTGCAGG 1 cut(s) 102
SetI ASST 9 cut(s) 99, 171, 179, 257, 264, 283, 349, 385, 394
SfaNI GCATC 1 cut(s) 196
SfcI CTRYAG 2 cut(s) 98, 378
SmiMI CAYNNNNRTG 1 cut(s) 366
Sse8387I CCTGCAGG 1 cut(s) 102
Sse9I AATT 1 cut(s) 82
SspI AATATT 1 cut(s) 374
SspMI CTAG 2 cut(s) 12, 442
StyD4I CCNGG 1 cut(s) 105
StyI CCWWGG 1 cut(s) 416
TaaI ACNGT 1 cut(s) 30
TaiI ACGT 1 cut(s) 283
TasI AATT 1 cut(s) 82
TfiI GAWTC 1 cut(s) 71
Tru1I TTAA 1 cut(s) 192
Tru9I TTAA 1 cut(s) 192
TscAI CASTG 1 cut(s) 340
TseI GCWGC 3 cut(s) 47, 249, 252
TspDTI ATGAA 5 cut(s) 17, 63, 132, 306, 384
TspRI CASTG 1 cut(s) 340
Van91I CCANNNNNTGG 1 cut(s) 169
XspI CTAG 2 cut(s) 12, 442
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.