root meristem growth factor
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| fragaria_vesca | FvH4_4g29040 |
| malus_domestica | MD13G1055500.v1.1 |
| prunus_persica | Prupe.1G295400_v2.0.a1 |
| rosa_laevigata | RLG00000006465 |
| rosa_multiflora | Rmu_ssc0000006.1_g000002 |
| rosa_roxburghii | Rroxscaffold_5G00378210 |
| rosa_rugosa | Rorug04G0298300 |
| rosa_samantha | Rh4AG353200 Rh4BG362800 Rh4CG377000 Rh4DG356700 |
| rosa_wichuraiana | Rw4G030940 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 351 |
| AciI | CCGC | 3 cut(s) | 161, 179, 359 |
| AfaI | GTAC | 1 cut(s) | 286 |
| AgsI | TTSAA | 2 cut(s) | 101, 221 |
| AjiI | CACGTC | 1 cut(s) | 49 |
| AjnI | CCWGG | 1 cut(s) | 27 |
| AluBI | AGCT | 3 cut(s) | 207, 217, 323 |
| AluI | AGCT | 3 cut(s) | 207, 217, 323 |
| Alw21I | GWGCWC | 1 cut(s) | 209 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 94, 126 |
| AsuHPI | GGTGA | 2 cut(s) | 193, 248 |
| BanI | GGYRCC | 1 cut(s) | 351 |
| BanII | GRGCYC | 1 cut(s) | 209 |
| Bbv12I | GWGCWC | 1 cut(s) | 209 |
| BciT130I | CCWGG | 1 cut(s) | 29 |
| BclI | TGATCA | 1 cut(s) | 238 |
| BfaI | CTAG | 1 cut(s) | 143 |
| Bme1390I | CCNGG | 1 cut(s) | 29 |
| BmgBI | CACGTC | 1 cut(s) | 49 |
| BmiI | GGNNCC | 1 cut(s) | 353 |
| BmrFI | CCNGG | 1 cut(s) | 29 |
| BsaJI | CCNNGG | 4 cut(s) | 28, 42, 129, 347 |
| Bse1I | ACTGG | 2 cut(s) | 162, 292 |
| BseBI | CCWGG | 1 cut(s) | 29 |
| BseDI | CCNNGG | 4 cut(s) | 28, 42, 129, 347 |
| BseNI | ACTGG | 2 cut(s) | 162, 292 |
| BshNI | GGYRCC | 1 cut(s) | 351 |
| BsiHKAI | GWGCWC | 1 cut(s) | 209 |
| Bsp1286I | GDGCHC | 1 cut(s) | 209 |
| Bsp143I | GATC | 2 cut(s) | 91, 238 |
| BspACI | CCGC | 3 cut(s) | 161, 179, 359 |
| BspLI | GGNNCC | 1 cut(s) | 353 |
| BspT107I | GGYRCC | 1 cut(s) | 351 |
| BsrI | ACTGG | 2 cut(s) | 162, 292 |
| BssECI | CCNNGG | 4 cut(s) | 28, 42, 129, 347 |
| BssMI | GATC | 2 cut(s) | 91, 238 |
| BssT1I | CCWWGG | 3 cut(s) | 42, 129, 347 |
| Bst2UI | CCWGG | 1 cut(s) | 29 |
| Bst4CI | ACNGT | 1 cut(s) | 230 |
| BstDEI | CTNAG | 1 cut(s) | 363 |
| BstKTI | GATC | 2 cut(s) | 94, 241 |
| BstMBI | GATC | 2 cut(s) | 91, 238 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 358 |
| BstNI | CCWGG | 1 cut(s) | 29 |
| BstSCI | CCNGG | 1 cut(s) | 27 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 49, 281 |
| BtrI | CACGTC | 1 cut(s) | 49 |
| Csp6I | GTAC | 1 cut(s) | 285 |
| CviAII | CATG | 3 cut(s) | 5, 260, 341 |
| CviJI | RGCY | 4 cut(s) | 142, 207, 217, 323 |
| CviKI_1 | RGCY | 4 cut(s) | 142, 207, 217, 323 |
| CviQI | GTAC | 1 cut(s) | 285 |
| DdeI | CTNAG | 1 cut(s) | 363 |
| DpnI | GATC | 2 cut(s) | 93, 240 |
| DpnII | GATC | 2 cut(s) | 91, 238 |
| Ecl136II | GAGCTC | 1 cut(s) | 207 |
| Eco130I | CCWWGG | 3 cut(s) | 42, 129, 347 |
| Eco24I | GRGCYC | 1 cut(s) | 209 |
| Eco53kI | GAGCTC | 1 cut(s) | 207 |
| EcoICRI | GAGCTC | 1 cut(s) | 207 |
| EcoRII | CCWGG | 1 cut(s) | 27 |
| EcoT14I | CCWWGG | 3 cut(s) | 42, 129, 347 |
| EcoT22I | ATGCAT | 1 cut(s) | 6 |
| EcoT38I | GRGCYC | 1 cut(s) | 209 |
| ErhI | CCWWGG | 3 cut(s) | 42, 129, 347 |
| FaeI | CATG | 3 cut(s) | 8, 263, 344 |
| FaiI | YATR | 4 cut(s) | 6, 96, 261, 342 |
| FatI | CATG | 3 cut(s) | 4, 259, 340 |
| FauI | CCCGC | 1 cut(s) | 366 |
| FbaI | TGATCA | 1 cut(s) | 238 |
| FriOI | GRGCYC | 1 cut(s) | 209 |
| FspBI | CTAG | 1 cut(s) | 143 |
| Hin1II | CATG | 3 cut(s) | 8, 263, 344 |
| HinfI | GANTC | 2 cut(s) | 62, 308 |
| HphI | GGTGA | 2 cut(s) | 193, 248 |
| Hpy188I | TCNGA | 2 cut(s) | 67, 168 |
| Hpy188III | TCNNGA | 1 cut(s) | 116 |
| HpyAV | CCTTC | 2 cut(s) | 144, 215 |
| HpyCH4III | ACNGT | 1 cut(s) | 230 |
| HpyCH4IV | ACGT | 1 cut(s) | 48 |
| HpyCH4V | TGCA | 1 cut(s) | 4 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 358 |
| HpyF3I | CTNAG | 1 cut(s) | 363 |
| HpySE526I | ACGT | 1 cut(s) | 48 |
| Hsp92II | CATG | 3 cut(s) | 8, 263, 344 |
| Ksp22I | TGATCA | 1 cut(s) | 238 |
| Kzo9I | GATC | 2 cut(s) | 91, 238 |
| LmnI | GCTCC | 2 cut(s) | 204, 349 |
| MaeI | CTAG | 1 cut(s) | 143 |
| MaeII | ACGT | 1 cut(s) | 48 |
| MaeIII | GTNAC | 2 cut(s) | 190, 269 |
| MalI | GATC | 2 cut(s) | 93, 240 |
| MboI | GATC | 2 cut(s) | 91, 238 |
| MhlI | GDGCHC | 1 cut(s) | 209 |
| MluCI | AATT | 1 cut(s) | 82 |
| MlyI | GAGTC | 1 cut(s) | 317 |
| MmeI | TCCRAC | 1 cut(s) | 48 |
| MnlI | CCTC | 5 cut(s) | 26, 123, 140, 289, 325 |
| Mph1103I | ATGCAT | 1 cut(s) | 6 |
| MseI | TTAA | 2 cut(s) | 174, 327 |
| MspR9I | CCNGG | 1 cut(s) | 29 |
| MvaI | CCWGG | 1 cut(s) | 29 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 358 |
| NdeII | GATC | 2 cut(s) | 91, 238 |
| NlaIII | CATG | 3 cut(s) | 8, 263, 344 |
| NlaIV | GGNNCC | 1 cut(s) | 353 |
| NmuCI | GTSAC | 1 cut(s) | 190 |
| NsiI | ATGCAT | 1 cut(s) | 6 |
| PfeI | GAWTC | 1 cut(s) | 62 |
| PleI | GAGTC | 1 cut(s) | 316 |
| PpsI | GAGTC | 1 cut(s) | 316 |
| Psp124BI | GAGCTC | 1 cut(s) | 209 |
| Psp6I | CCWGG | 1 cut(s) | 27 |
| PspGI | CCWGG | 1 cut(s) | 27 |
| PspN4I | GGNNCC | 1 cut(s) | 353 |
| RsaI | GTAC | 1 cut(s) | 286 |
| RsaNI | GTAC | 1 cut(s) | 285 |
| SacI | GAGCTC | 1 cut(s) | 209 |
| SaqAI | TTAA | 2 cut(s) | 174, 327 |
| Sau3AI | GATC | 2 cut(s) | 91, 238 |
| SchI | GAGTC | 1 cut(s) | 317 |
| ScrFI | CCNGG | 1 cut(s) | 29 |
| SduI | GDGCHC | 1 cut(s) | 209 |
| SetI | ASST | 5 cut(s) | 51, 61, 209, 219, 325 |
| Sse9I | AATT | 1 cut(s) | 82 |
| SsiI | CCGC | 3 cut(s) | 161, 179, 359 |
| SspMI | CTAG | 1 cut(s) | 143 |
| SstI | GAGCTC | 1 cut(s) | 209 |
| StyD4I | CCNGG | 1 cut(s) | 27 |
| StyI | CCWWGG | 3 cut(s) | 42, 129, 347 |
| TaaI | ACNGT | 1 cut(s) | 230 |
| TaiI | ACGT | 1 cut(s) | 51 |
| TasI | AATT | 1 cut(s) | 82 |
| TfiI | GAWTC | 1 cut(s) | 62 |
| Tru1I | TTAA | 2 cut(s) | 174, 327 |
| Tru9I | TTAA | 2 cut(s) | 174, 327 |
| TseFI | GTSAC | 1 cut(s) | 190 |
| Tsp45I | GTSAC | 1 cut(s) | 190 |
| XspI | CTAG | 1 cut(s) | 143 |
| Zsp2I | ATGCAT | 1 cut(s) | 6 |