Rw4G030940

root meristem growth factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr4
OG0017656
Physical Location & Seq
Forward (+)
57732107 .. 57732909
803 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw4G030940.1

Sequence Viewer

Length: 432 bp
ATGGGTCCTGTGAAGTGTGCTTACTTAGCACTGCTGCTGTTTCTCTCTGCTGCATGCCTGTGGAAGACCTTCGACACACATTCCCCTCGTCAATTAGAGGGAAACGCTGCTGTGACAAGAATTCAAGCTGTTTCGACCGTAAATGGAGATCATATTCAAATGGTTAGTCCTCCTGATATTGCTACCAAGGAGAACAGGCTAGGAGGAAGGAAACTGGCGGTTCAGAAAGTTAAAGCGGTGAATGGTGTGACTGCTGTAAGGAGCTCAAACCAGCTTGAAGGGAACTGTGGTGGTGATCAAGTGAAGCAGGGTAGTCATGTAGAGTGTAACCAACAAAGTGGTACTGGATTTGAGGGAGTTGATGAGTCTGGTTTTGTAGCTTTTAATGAGGATTACCATGCTCCAAGGCACCACCCGCCTAAGAACAACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

143

Amino Acids

15.37

Weight (kDa)

7.74

Isoelectric Point (pI)

40.75

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017656)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g29040
malus_domestica MD13G1055500.v1.1
prunus_persica Prupe.1G295400_v2.0.a1
rosa_laevigata RLG00000006465
rosa_multiflora Rmu_ssc0000006.1_g000002
rosa_roxburghii Rroxscaffold_5G00378210
rosa_rugosa Rorug04G0298300
rosa_samantha Rh4AG353200 Rh4BG362800 Rh4CG377000 Rh4DG356700
rosa_wichuraiana Rw4G030940

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 408
AciI CCGC 3 cut(s) 218, 236, 416
AcsI RAATTY 1 cut(s) 120
AfaI GTAC 1 cut(s) 343
AgsI TTSAA 3 cut(s) 125, 158, 278
AluBI AGCT 4 cut(s) 128, 264, 274, 380
AluI AGCT 4 cut(s) 128, 264, 274, 380
Alw21I GWGCWC 1 cut(s) 266
ApeKI GCWGC 3 cut(s) 34, 50, 107
ApoI RAATTY 1 cut(s) 120
ArsI GACNNNNNNTTYG 2 cut(s) 151, 183
Asp700I GAANNNNTTC 1 cut(s) 68
AspS9I GGNCC 1 cut(s) 5
AsuHPI GGTGA 2 cut(s) 250, 305
AvaII GGWCC 1 cut(s) 5
BanI GGYRCC 1 cut(s) 408
BanII GRGCYC 1 cut(s) 266
BarI GAAGNNNNNNTAC 1 cut(s) 37
BbsI GAAGAC 1 cut(s) 71
Bbv12I GWGCWC 1 cut(s) 266
BbvI GCAGC 3 cut(s) 21, 37, 94
BclI TGATCA 1 cut(s) 295
BfaI CTAG 1 cut(s) 200
BisI GCNGC 3 cut(s) 35, 51, 108
BlsI GCNGC 3 cut(s) 36, 52, 109
Bme18I GGWCC 1 cut(s) 5
BmgT120I GGNCC 1 cut(s) 5
BmiI GGNNCC 2 cut(s) 6, 410
BpiI GAAGAC 1 cut(s) 71
BsaJI CCNNGG 2 cut(s) 186, 404
Bse1I ACTGG 2 cut(s) 219, 349
BseDI CCNNGG 2 cut(s) 186, 404
BseNI ACTGG 2 cut(s) 219, 349
BseXI GCAGC 3 cut(s) 21, 37, 94
Bsh1285I CGRYCG 1 cut(s) 138
BshNI GGYRCC 1 cut(s) 408
BsiEI CGRYCG 1 cut(s) 138
BsiHKAI GWGCWC 1 cut(s) 266
Bsp1286I GDGCHC 1 cut(s) 266
Bsp143I GATC 2 cut(s) 148, 295
BspACI CCGC 3 cut(s) 218, 236, 416
BspLI GGNNCC 2 cut(s) 6, 410
BspT107I GGYRCC 1 cut(s) 408
BsrI ACTGG 2 cut(s) 219, 349
BssECI CCNNGG 2 cut(s) 186, 404
BssMI GATC 2 cut(s) 148, 295
BssT1I CCWWGG 2 cut(s) 186, 404
Bst4CI ACNGT 2 cut(s) 139, 287
BstC8I GCNNGC 1 cut(s) 55
BstDEI CTNAG 2 cut(s) 25, 420
BstKTI GATC 2 cut(s) 151, 298
BstMBI GATC 2 cut(s) 148, 295
BstMCI CGRYCG 1 cut(s) 138
BstMWI GCNNNNNNNGC 2 cut(s) 26, 415
BstNSI RCATGY 1 cut(s) 57
BstV1I GCAGC 3 cut(s) 21, 37, 94
BstV2I GAAGAC 1 cut(s) 71
BstXI CCANNNNNNTGG 1 cut(s) 338
BtsI GCAGTG 1 cut(s) 29
BtsIMutI CAGTG 1 cut(s) 29
Cac8I GCNNGC 1 cut(s) 55
Cfr13I GGNCC 1 cut(s) 5
Csp6I GTAC 1 cut(s) 342
CviAII CATG 3 cut(s) 54, 317, 398
CviJI RGCY 5 cut(s) 128, 199, 264, 274, 380
CviKI_1 RGCY 5 cut(s) 128, 199, 264, 274, 380
CviQI GTAC 1 cut(s) 342
DdeI CTNAG 2 cut(s) 25, 420
DpnI GATC 2 cut(s) 150, 297
DpnII GATC 2 cut(s) 148, 295
Ecl136II GAGCTC 1 cut(s) 264
Eco130I CCWWGG 2 cut(s) 186, 404
Eco24I GRGCYC 1 cut(s) 266
Eco47I GGWCC 1 cut(s) 5
Eco53kI GAGCTC 1 cut(s) 264
EcoICRI GAGCTC 1 cut(s) 264
EcoO109I RGGNCCY 1 cut(s) 5
EcoRI GAATTC 1 cut(s) 120
EcoT14I CCWWGG 2 cut(s) 186, 404
EcoT38I GRGCYC 1 cut(s) 266
ErhI CCWWGG 2 cut(s) 186, 404
FaeI CATG 3 cut(s) 57, 320, 401
FaiI YATR 4 cut(s) 55, 153, 318, 399
FatI CATG 3 cut(s) 53, 316, 397
FauI CCCGC 1 cut(s) 423
FbaI TGATCA 1 cut(s) 295
Fnu4HI GCNGC 3 cut(s) 35, 51, 108
FriOI GRGCYC 1 cut(s) 266
Fsp4HI GCNGC 3 cut(s) 35, 51, 108
FspBI CTAG 1 cut(s) 200
GluI GCNGC 3 cut(s) 35, 51, 108
Hin1II CATG 3 cut(s) 57, 320, 401
HinfI GANTC 1 cut(s) 365
HphI GGTGA 2 cut(s) 250, 305
Hpy188I TCNGA 1 cut(s) 225
Hpy188III TCNNGA 1 cut(s) 173
HpyAV CCTTC 3 cut(s) 79, 201, 272
HpyCH4III ACNGT 2 cut(s) 139, 287
HpyCH4V TGCA 1 cut(s) 53
HpyF10VI GCNNNNNNNGC 2 cut(s) 26, 415
HpyF3I CTNAG 2 cut(s) 25, 420
Hsp92II CATG 3 cut(s) 57, 320, 401
Ksp22I TGATCA 1 cut(s) 295
Kzo9I GATC 2 cut(s) 148, 295
LmnI GCTCC 2 cut(s) 261, 406
LpnPI CCDG 9 cut(s) 21, 71, 181, 186, 200, 284, 293, 330, 354
Lsp1109I GCAGC 3 cut(s) 21, 37, 94
MaeI CTAG 1 cut(s) 200
MaeIII GTNAC 3 cut(s) 112, 247, 326
MalI GATC 2 cut(s) 150, 297
MboI GATC 2 cut(s) 148, 295
MboII GAAGA 1 cut(s) 76
MhlI GDGCHC 1 cut(s) 266
MluCI AATT 2 cut(s) 92, 120
MlyI GAGTC 1 cut(s) 374
MnlI CCTC 6 cut(s) 91, 96, 180, 197, 346, 382
MroXI GAANNNNTTC 1 cut(s) 68
MseI TTAA 2 cut(s) 231, 384
MslI CAYNNNNRTG 1 cut(s) 58
MwoI GCNNNNNNNGC 2 cut(s) 26, 415
NdeII GATC 2 cut(s) 148, 295
NlaIII CATG 3 cut(s) 57, 320, 401
NlaIV GGNNCC 2 cut(s) 6, 410
NmuCI GTSAC 2 cut(s) 112, 247
NspI RCATGY 1 cut(s) 57
PaeI GCATGC 1 cut(s) 57
PdmI GAANNNNTTC 1 cut(s) 68
PkrI GCNGC 3 cut(s) 36, 52, 109
PleI GAGTC 1 cut(s) 373
PpsI GAGTC 1 cut(s) 373
PpuMI RGGWCCY 1 cut(s) 5
Psp124BI GAGCTC 1 cut(s) 266
Psp5II RGGWCCY 1 cut(s) 5
PspN4I GGNNCC 2 cut(s) 6, 410
PspPI GGNCC 1 cut(s) 5
PspPPI RGGWCCY 1 cut(s) 5
RsaI GTAC 1 cut(s) 343
RsaNI GTAC 1 cut(s) 342
RseI CAYNNNNRTG 1 cut(s) 58
SacI GAGCTC 1 cut(s) 266
SaqAI TTAA 2 cut(s) 231, 384
SatI GCNGC 3 cut(s) 35, 51, 108
Sau3AI GATC 2 cut(s) 148, 295
Sau96I GGNCC 1 cut(s) 5
SchI GAGTC 1 cut(s) 374
SduI GDGCHC 1 cut(s) 266
SetI ASST 5 cut(s) 71, 130, 266, 276, 382
SinI GGWCC 1 cut(s) 5
SmiMI CAYNNNNRTG 1 cut(s) 58
SphI GCATGC 1 cut(s) 57
Sse9I AATT 2 cut(s) 92, 120
SsiI CCGC 3 cut(s) 218, 236, 416
SspMI CTAG 1 cut(s) 200
SstI GAGCTC 1 cut(s) 266
StyI CCWWGG 2 cut(s) 186, 404
TaaI ACNGT 2 cut(s) 139, 287
TaqI TCGA 2 cut(s) 72, 134
TasI AATT 2 cut(s) 92, 120
Tru1I TTAA 2 cut(s) 231, 384
Tru9I TTAA 2 cut(s) 231, 384
TscAI CASTG 1 cut(s) 36
TseFI GTSAC 2 cut(s) 112, 247
TseI GCWGC 3 cut(s) 34, 50, 107
Tsp45I GTSAC 2 cut(s) 112, 247
TspRI CASTG 1 cut(s) 36
VpaK11BI GGWCC 1 cut(s) 5
XapI RAATTY 1 cut(s) 120
XceI RCATGY 1 cut(s) 57
XmnI GAANNNNTTC 1 cut(s) 68
XspI CTAG 1 cut(s) 200
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.