Rorug04G0298300

UDP-glycosyltransferase 89A2-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0003168
Physical Location & Seq
Forward (+)
47321428 .. 47323979
2552 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0298300.1

Sequence Viewer

Length: 546 bp
ATGGGGCTGTCTTTCACCAAACTTTTCAGCAAACTTTTCGCTAAGAAAGATATGCGTATTCTTATGGTGGGTCTTGATGCTGCTGGCAAAACCACCATTTTGTATAAGCTCAAGTTAGGCGAAATCGTTACCACCATTCCTACCATTGGATTTAATGTGGAAACTGTGGAATACAAAAACATCAGCTTCACAGTGTGGGATGTTGGGGGCCAAGACAAGATTCGACCACTATGGAGACACTACTTCCAAAACACACAAGGGCTTGTCTTTGTGATTGACAGCAATGATCGAGATCGTGTTGTTGAGGCTAAAGATGAGCTGCACAGGATGTTGAATGAGGACGAGTTGAGGGATGCTGTGCTTCTTGTGTTTGCAAACAAGCAAGATCTTCCAAATGCAATGAATGCTGCTGAGATCACCGATAAGCTTGGCCTTCATTCTCTTCGACAACGCCATTGGTATATCCAGAGTACATGTGCCACTTCCGGTGAAGGATTGTACGAGGGATTGGACTGGCTTTCAAACAACATTGCTAACAAGGCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0008194 GO:0016740 GO:0016757 GO:0016758 GO:0035251 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046527 GO:0080043 GO:0080044
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
UDPGT

Protein Analysis

181

Amino Acids

20.61

Weight (kDa)

6.42

Isoelectric Point (pI)

31.94

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Arf PF00025 5 - 177 1.6e-81 ADP-ribosylation factor family
SRPRB PF09439 16 - 143 9.1e-13 Signal recognition particle receptor beta subunit
Roc PF08477 19 - 129 1.4e-13 Ras of Complex, Roc, domain of DAPkinase
Ras PF00071 19 - 173 6.3e-12 Ras family
Gtr1_RagA PF04670 19 - 141 1.1e-09 Gtr1/RagA G protein conserved region
G-alpha PF00503 45 - 112 2.8e-09 G-protein alpha subunit
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AdeI CACNNNGTG 1 cut(s) 195
AfaI GTAC 2 cut(s) 472, 500
AfiI CCNNNNNNNGG 1 cut(s) 146
AflIII ACRYGT 1 cut(s) 473
AgsI TTSAA 2 cut(s) 334, 522
AjuI GAANNNNNNNTTGG 2 cut(s) 204, 236
AluBI AGCT 4 cut(s) 109, 186, 319, 427
AluI AGCT 4 cut(s) 109, 186, 319, 427
Alw26I GTCTC 1 cut(s) 229
AoxI GGCC 2 cut(s) 208, 430
ApeKI GCWGC 3 cut(s) 80, 319, 407
AspS9I GGNCC 1 cut(s) 208
AsuHPI GGTGA 3 cut(s) 7, 409, 500
BbvI GCAGC 3 cut(s) 67, 306, 394
BcgI CGANNNNNNTGC 2 cut(s) 19, 53
BcoDI GTCTC 1 cut(s) 229
BglII AGATCT 1 cut(s) 385
BisI GCNGC 3 cut(s) 81, 320, 408
BlsI GCNGC 3 cut(s) 82, 321, 409
BmgT120I GGNCC 1 cut(s) 208
BmiI GGNNCC 1 cut(s) 209
BmsI GCATC 2 cut(s) 67, 343
BpuEI CTTGAG 1 cut(s) 95
BsaBI GATNNNNATC 1 cut(s) 291
BsaWI WCCGGW 1 cut(s) 485
Bsc4I CCNNNNNNNGG 1 cut(s) 146
Bse1I ACTGG 1 cut(s) 518
Bse3DI GCAATG 3 cut(s) 289, 405, 528
Bse8I GATNNNNATC 1 cut(s) 291
BseGI GGATG 3 cut(s) 205, 333, 358
BseJI GATNNNNATC 1 cut(s) 291
BseLI CCNNNNNNNGG 1 cut(s) 146
BseMI GCAATG 3 cut(s) 289, 405, 528
BseMII CTCAG 1 cut(s) 402
BseNI ACTGG 1 cut(s) 518
BseXI GCAGC 3 cut(s) 67, 306, 394
BsgI GTGCAG 1 cut(s) 305
BshFI GGCC 2 cut(s) 210, 432
BsiSI CCGG 1 cut(s) 486
BslI CCNNNNNNNGG 1 cut(s) 146
BsmAI GTCTC 1 cut(s) 229
BsmI GAATGC 1 cut(s) 409
BsnI GGCC 2 cut(s) 210, 432
Bsp143I GATC 4 cut(s) 286, 292, 385, 414
BspANI GGCC 2 cut(s) 210, 432
BspCNI CTCAG 1 cut(s) 403
BspLI GGNNCC 1 cut(s) 209
BsrDI GCAATG 3 cut(s) 289, 405, 528
BsrI ACTGG 1 cut(s) 518
BssMI GATC 4 cut(s) 286, 292, 385, 414
Bst4CI ACNGT 2 cut(s) 166, 193
Bst6I CTCTTC 1 cut(s) 447
BstAPI GCANNNNNTGC 1 cut(s) 404
BstC8I GCNNGC 1 cut(s) 85
BstDEI CTNAG 3 cut(s) 42, 411, 543
BstF5I GGATG 3 cut(s) 205, 333, 358
BstKTI GATC 4 cut(s) 289, 295, 388, 417
BstMAI GTCTC 1 cut(s) 229
BstMBI GATC 4 cut(s) 286, 292, 385, 414
BstMWI GCNNNNNNNGC 2 cut(s) 404, 539
BstNSI RCATGY 1 cut(s) 477
BstV1I GCAGC 3 cut(s) 67, 306, 394
BstX2I RGATCY 1 cut(s) 385
BstYI RGATCY 1 cut(s) 385
BsuRI GGCC 2 cut(s) 210, 432
BtsCI GGATG 3 cut(s) 205, 333, 358
BtsIMutI CAGTG 1 cut(s) 198
Cac8I GCNNGC 1 cut(s) 85
Cfr13I GGNCC 1 cut(s) 208
Csp6I GTAC 2 cut(s) 471, 499
CviAII CATG 1 cut(s) 474
CviQI GTAC 2 cut(s) 471, 499
DdeI CTNAG 3 cut(s) 42, 411, 543
DpnI GATC 4 cut(s) 288, 294, 387, 416
DpnII GATC 4 cut(s) 286, 292, 385, 414
DraIII CACNNNGTG 1 cut(s) 195
Eam1104I CTCTTC 1 cut(s) 447
EarI CTCTTC 1 cut(s) 447
FaeI CATG 1 cut(s) 477
FaiI YATR 6 cut(s) 53, 65, 105, 232, 462, 475
FatI CATG 1 cut(s) 473
Fnu4HI GCNGC 3 cut(s) 81, 320, 408
FokI GGATG 3 cut(s) 212, 340, 365
Fsp4HI GCNGC 3 cut(s) 81, 320, 408
GluI GCNGC 3 cut(s) 81, 320, 408
HaeIII GGCC 2 cut(s) 210, 432
HapII CCGG 1 cut(s) 486
Hin1II CATG 1 cut(s) 477
HindIII AAGCTT 1 cut(s) 425
HinfI GANTC 1 cut(s) 220
HpaII CCGG 1 cut(s) 486
HphI GGTGA 3 cut(s) 7, 409, 500
Hpy188III TCNNGA 3 cut(s) 74, 290, 466
HpyAV CCTTC 2 cut(s) 443, 485
HpyCH4III ACNGT 2 cut(s) 166, 193
HpyCH4V TGCA 3 cut(s) 322, 374, 398
HpyF10VI GCNNNNNNNGC 2 cut(s) 404, 539
HpyF3I CTNAG 3 cut(s) 42, 411, 543
Hsp92II CATG 1 cut(s) 477
Kzo9I GATC 4 cut(s) 286, 292, 385, 414
LpnPI CCDG 5 cut(s) 69, 310, 479, 499, 499
Lsp1109I GCAGC 3 cut(s) 67, 306, 394
LweI GCATC 2 cut(s) 67, 343
MaeIII GTNAC 1 cut(s) 127
MalI GATC 4 cut(s) 288, 294, 387, 416
MboI GATC 4 cut(s) 286, 292, 385, 414
MboII GAAGA 2 cut(s) 380, 434
MflI RGATCY 1 cut(s) 385
MnlI CCTC 4 cut(s) 298, 331, 342, 496
MseI TTAA 1 cut(s) 153
MspI CCGG 1 cut(s) 486
Mva1269I GAATGC 1 cut(s) 409
MwoI GCNNNNNNNGC 2 cut(s) 404, 539
NdeII GATC 4 cut(s) 286, 292, 385, 414
NlaIII CATG 1 cut(s) 477
NlaIV GGNNCC 1 cut(s) 209
NspI RCATGY 1 cut(s) 477
PciI ACATGT 1 cut(s) 473
PctI GAATGC 1 cut(s) 409
PfeI GAWTC 1 cut(s) 220
PkrI GCNGC 3 cut(s) 82, 321, 409
PscI ACATGT 1 cut(s) 473
PspN4I GGNNCC 1 cut(s) 209
PspPI GGNCC 1 cut(s) 208
PsuI RGATCY 1 cut(s) 385
RsaI GTAC 2 cut(s) 472, 500
RsaNI GTAC 2 cut(s) 471, 499
SaqAI TTAA 1 cut(s) 153
SatI GCNGC 3 cut(s) 81, 320, 408
Sau3AI GATC 4 cut(s) 286, 292, 385, 414
Sau96I GGNCC 1 cut(s) 208
SetI ASST 4 cut(s) 111, 188, 321, 429
SfaNI GCATC 2 cut(s) 67, 343
SmlI CTYRAG 1 cut(s) 110
SmoI CTYRAG 1 cut(s) 110
TaaI ACNGT 2 cut(s) 166, 193
TaqI TCGA 3 cut(s) 223, 289, 445
TatI WGTACW 1 cut(s) 470
TfiI GAWTC 1 cut(s) 220
Tru1I TTAA 1 cut(s) 153
Tru9I TTAA 1 cut(s) 153
TscAI CASTG 1 cut(s) 198
TseI GCWGC 3 cut(s) 80, 319, 407
TspDTI ATGAA 2 cut(s) 416, 425
TspRI CASTG 1 cut(s) 198
XceI RCATGY 1 cut(s) 477
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.