Rroxscaffold_5G00378300

UDP-glycosyltransferase 89A2-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0003168
Physical Location & Seq
Forward (+)
58776145 .. 58776684
540 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00378300.1

Sequence Viewer

Length: 540 bp
ATGGAGGCGTTGGCCTCCGGGCTCGAAAAGAGTGGAATTCGATTTGTGTGGGCTGTTAAAGAGGGCTCAGCCCAACAGATTGAGGAAGGGCTCGAAGTTGTACCTGATGGGCTTGAGGAAAGGGTTGCCGGCCGAGGAGTGCTGATAAAGAGTTGGGTCCCCGAGGTGTTGGTCCTGGGTCATCGGGCCGTAGGTGGATTTATCAGCCACTGTGGGTGGAACTCAGTGCTCGAAGCGATGGTTTCGGGTGTGTTGATATTGGCCTGGCCCATGGAGACTGACCAGTTTGTGAACGCCAAGCTGTTGGTGAAGGACATGGGCGTCGCTGTACAAGAGGGTGAGGGTGCTAATGGGATACCCGACCCTGCCCATTTGGGAAACATGATCCATGAGTCACTGACTGGGAACATACCTGAAAAGGTGAGTGGAAGGGTGCTTAGGTACAAGGCATTTGGTGCTGTGAGAAATGGTGGGAGCTCTTCCAAGCATTTGGATGAGCTTGTGAAAGAATTGGGTCAGCTTAAGTTGCGGAGTGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0008194 GO:0016740 GO:0016757 GO:0016758 GO:0035251 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046527 GO:0080043 GO:0080044
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
UDPGT

Protein Analysis

179

Amino Acids

19.18

Weight (kDa)

5.57

Isoelectric Point (pI)

25.43

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UDPGT PF00201 2 - 105 6.6e-15 UDP-glucoronosyl and UDP-glucosyl transferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 320
AciI CCGC 1 cut(s) 529
AclWI GGATC 1 cut(s) 379
AcoI YGGCCR 1 cut(s) 130
AcsI RAATTY 1 cut(s) 36
AcyI GRCGYC 1 cut(s) 321
AfaI GTAC 3 cut(s) 102, 330, 443
AflII CTTAAG 1 cut(s) 521
AjnI CCWGG 2 cut(s) 174, 263
AluBI AGCT 4 cut(s) 301, 477, 499, 520
AluI AGCT 4 cut(s) 301, 477, 499, 520
Alw21I GWGCWC 2 cut(s) 231, 479
Alw26I GTCTC 1 cut(s) 269
AlwI GGATC 1 cut(s) 379
AlwNI CAGNNNCTG 1 cut(s) 210
Ama87I CYCGRG 1 cut(s) 161
AoxI GGCC 5 cut(s) 12, 130, 186, 261, 266
ApoI RAATTY 1 cut(s) 36
AspS9I GGNCC 4 cut(s) 157, 172, 186, 267
AsuC2I CCSGG 1 cut(s) 19
AsuHPI GGTGA 3 cut(s) 319, 350, 433
AvaI CYCGRG 1 cut(s) 161
AvaII GGWCC 2 cut(s) 157, 172
BanII GRGCYC 4 cut(s) 24, 68, 93, 479
Bbv12I GWGCWC 2 cut(s) 231, 479
BccI CCATC 2 cut(s) 101, 232
BceAI ACGGC 1 cut(s) 173
BciT130I CCWGG 2 cut(s) 176, 265
BciVI GTATCC 1 cut(s) 348
BcnI CCSGG 1 cut(s) 19
BcoDI GTCTC 1 cut(s) 269
BfrI CTTAAG 1 cut(s) 521
BfuI GTATCC 1 cut(s) 348
BlpI GCTNAGC 1 cut(s) 67
Bme1390I CCNGG 3 cut(s) 19, 176, 265
Bme18I GGWCC 2 cut(s) 157, 172
BmeT110I CYCGRG 1 cut(s) 161
BmgT120I GGNCC 4 cut(s) 157, 172, 186, 267
BmiI GGNNCC 2 cut(s) 158, 159
BmrFI CCNGG 3 cut(s) 19, 176, 265
BmrI ACTGGG 1 cut(s) 411
BmuI ACTGGG 1 cut(s) 411
Bpu10I CCTNAGC 1 cut(s) 437
Bpu1102I GCTNAGC 1 cut(s) 67
BpuEI CTTGAG 1 cut(s) 134
BpuMI CCSGG 1 cut(s) 19
BsaHI GRCGYC 1 cut(s) 321
BsaJI CCNNGG 4 cut(s) 133, 162, 175, 270
Bse118I RCCGGY 1 cut(s) 128
Bse1I ACTGG 2 cut(s) 283, 406
BseBI CCWGG 2 cut(s) 176, 265
BseDI CCNNGG 4 cut(s) 133, 162, 175, 270
BseGI GGATG 1 cut(s) 499
BseMII CTCAG 2 cut(s) 81, 237
BseNI ACTGG 2 cut(s) 283, 406
BseRI GAGGAG 1 cut(s) 150
BseX3I CGGCCG 1 cut(s) 130
Bsh1285I CGRYCG 1 cut(s) 133
BshFI GGCC 5 cut(s) 14, 132, 188, 263, 268
BsiEI CGRYCG 1 cut(s) 133
BsiHKAI GWGCWC 2 cut(s) 231, 479
BsiHKCI CYCGRG 1 cut(s) 161
BsiSI CCGG 2 cut(s) 18, 129
BslFI GGGAC 1 cut(s) 143
BsmAI GTCTC 1 cut(s) 269
BsmFI GGGAC 1 cut(s) 143
BsnI GGCC 5 cut(s) 14, 132, 188, 263, 268
BsoBI CYCGRG 1 cut(s) 161
Bsp1286I GDGCHC 5 cut(s) 24, 68, 93, 231, 479
Bsp1407I TGTACA 1 cut(s) 328
Bsp143I GATC 1 cut(s) 384
Bsp1720I GCTNAGC 1 cut(s) 67
Bsp19I CCATGG 1 cut(s) 270
BspACI CCGC 1 cut(s) 529
BspANI GGCC 5 cut(s) 14, 132, 188, 263, 268
BspCNI CTCAG 2 cut(s) 80, 236
BspLI GGNNCC 2 cut(s) 158, 159
BspPI GGATC 1 cut(s) 379
BspQI GCTCTTC 1 cut(s) 484
BspTI CTTAAG 1 cut(s) 521
BsrFI RCCGGY 1 cut(s) 128
BsrGI TGTACA 1 cut(s) 328
BsrI ACTGG 2 cut(s) 283, 406
BssAI RCCGGY 1 cut(s) 128
BssECI CCNNGG 4 cut(s) 133, 162, 175, 270
BssMI GATC 1 cut(s) 384
BssNI GRCGYC 1 cut(s) 321
BssT1I CCWWGG 1 cut(s) 270
Bst2UI CCWGG 2 cut(s) 176, 265
Bst4CI ACNGT 1 cut(s) 212
Bst6I CTCTTC 1 cut(s) 484
BstACI GRCGYC 1 cut(s) 321
BstAFI CTTAAG 1 cut(s) 521
BstAPI GCANNNNNTGC 1 cut(s) 455
BstAUI TGTACA 1 cut(s) 328
BstC8I GCNNGC 1 cut(s) 130
BstDEI CTNAG 3 cut(s) 67, 223, 437
BstDSI CCRYGG 1 cut(s) 270
BstF5I GGATG 1 cut(s) 499
BstKTI GATC 1 cut(s) 387
BstMAI GTCTC 1 cut(s) 269
BstMBI GATC 1 cut(s) 384
BstMCI CGRYCG 1 cut(s) 133
BstMWI GCNNNNNNNGC 2 cut(s) 455, 526
BstNI CCWGG 2 cut(s) 176, 265
BstSCI CCNGG 3 cut(s) 17, 174, 263
BstXI CCANNNNNNTGG 2 cut(s) 304, 490
BstZI CGGCCG 1 cut(s) 130
BsuI GTATCC 1 cut(s) 348
BsuRI GGCC 5 cut(s) 14, 132, 188, 263, 268
BtgI CCRYGG 1 cut(s) 270
BtgZI GCGATG 1 cut(s) 251
BtsCI GGATG 1 cut(s) 499
BtsIMutI CAGTG 3 cut(s) 208, 231, 395
Cac8I GCNNGC 1 cut(s) 130
CaiI CAGNNNCTG 1 cut(s) 210
Cfr10I RCCGGY 1 cut(s) 128
Cfr13I GGNCC 4 cut(s) 157, 172, 186, 267
CseI GACGC 1 cut(s) 310
Csp6I GTAC 3 cut(s) 101, 329, 442
CviAII CATG 4 cut(s) 271, 316, 382, 389
CviQI GTAC 3 cut(s) 101, 329, 442
DdeI CTNAG 3 cut(s) 67, 223, 437
DpnI GATC 1 cut(s) 386
DpnII GATC 1 cut(s) 384
DrdI GACNNNNNNGTC 1 cut(s) 320
DseDI GACNNNNNNGTC 1 cut(s) 320
EaeI YGGCCR 1 cut(s) 130
EagI CGGCCG 1 cut(s) 130
Eam1104I CTCTTC 1 cut(s) 484
EarI CTCTTC 1 cut(s) 484
Ecl136II GAGCTC 1 cut(s) 477
EclXI CGGCCG 1 cut(s) 130
Eco130I CCWWGG 1 cut(s) 270
Eco24I GRGCYC 4 cut(s) 24, 68, 93, 479
Eco47I GGWCC 2 cut(s) 157, 172
Eco52I CGGCCG 1 cut(s) 130
Eco53kI GAGCTC 1 cut(s) 477
Eco88I CYCGRG 1 cut(s) 161
EcoICRI GAGCTC 1 cut(s) 477
EcoO109I RGGNCCY 1 cut(s) 157
EcoRI GAATTC 1 cut(s) 36
EcoRII CCWGG 2 cut(s) 174, 263
EcoT14I CCWWGG 1 cut(s) 270
EcoT38I GRGCYC 4 cut(s) 24, 68, 93, 479
ErhI CCWWGG 1 cut(s) 270
FaeI CATG 4 cut(s) 274, 319, 385, 392
FaiI YATR 5 cut(s) 272, 317, 383, 390, 410
FaqI GGGAC 1 cut(s) 143
FatI CATG 4 cut(s) 270, 315, 381, 388
FokI GGATG 1 cut(s) 506
FriOI GRGCYC 4 cut(s) 24, 68, 93, 479
HaeIII GGCC 5 cut(s) 14, 132, 188, 263, 268
HapII CCGG 2 cut(s) 18, 129
HgaI GACGC 1 cut(s) 310
Hin1I GRCGYC 1 cut(s) 321
Hin1II CATG 4 cut(s) 274, 319, 385, 392
HinfI GANTC 1 cut(s) 392
HpaII CCGG 2 cut(s) 18, 129
HphI GGTGA 3 cut(s) 319, 350, 433
Hpy166II GTNNAC 1 cut(s) 292
Hpy8I GTNNAC 1 cut(s) 292
Hpy99I CGWCG 1 cut(s) 326
HpyAV CCTTC 3 cut(s) 80, 304, 423
HpyCH4III ACNGT 1 cut(s) 212
HpyF10VI GCNNNNNNNGC 2 cut(s) 455, 526
HpyF3I CTNAG 3 cut(s) 67, 223, 437
Hsp92I GRCGYC 1 cut(s) 321
Hsp92II CATG 4 cut(s) 274, 319, 385, 392
KflI GGGWCCC 1 cut(s) 157
KroI GCCGGC 1 cut(s) 128
KroNI GCCGGC 1 cut(s) 130
Kzo9I GATC 1 cut(s) 384
LguI GCTCTTC 1 cut(s) 484
LmnI GCTCC 1 cut(s) 474
MaeIII GTNAC 1 cut(s) 393
MalI GATC 1 cut(s) 386
MboI GATC 1 cut(s) 384
MboII GAAGA 1 cut(s) 471
MhlI GDGCHC 5 cut(s) 24, 68, 93, 231, 479
MluCI AATT 2 cut(s) 36, 509
MlyI GAGTC 1 cut(s) 401
MnlI CCTC 8 cut(s) 25, 55, 76, 109, 128, 157, 328, 334
MroNI GCCGGC 1 cut(s) 128
MseI TTAA 2 cut(s) 57, 522
MslI CAYNNNNRTG 1 cut(s) 492
MspCI CTTAAG 1 cut(s) 521
MspI CCGG 2 cut(s) 18, 129
MspR9I CCNGG 3 cut(s) 19, 176, 265
MvaI CCWGG 2 cut(s) 176, 265
MwoI GCNNNNNNNGC 2 cut(s) 455, 526
NaeI GCCGGC 1 cut(s) 130
NciI CCSGG 1 cut(s) 19
NcoI CCATGG 1 cut(s) 270
NdeII GATC 1 cut(s) 384
NgoMIV GCCGGC 1 cut(s) 128
NlaIII CATG 4 cut(s) 274, 319, 385, 392
NlaIV GGNNCC 2 cut(s) 158, 159
NmeAIII GCCGAG 1 cut(s) 158
NmuCI GTSAC 1 cut(s) 393
PciSI GCTCTTC 1 cut(s) 484
PdiI GCCGGC 1 cut(s) 130
PleI GAGTC 1 cut(s) 400
PpsI GAGTC 1 cut(s) 400
PpuMI RGGWCCY 1 cut(s) 157
Psp124BI GAGCTC 1 cut(s) 479
Psp5II RGGWCCY 1 cut(s) 157
Psp6I CCWGG 2 cut(s) 174, 263
PspGI CCWGG 2 cut(s) 174, 263
PspN4I GGNNCC 2 cut(s) 158, 159
PspPI GGNCC 4 cut(s) 157, 172, 186, 267
PspPPI RGGWCCY 1 cut(s) 157
PstNI CAGNNNCTG 1 cut(s) 210
RsaI GTAC 3 cut(s) 102, 330, 443
RsaNI GTAC 3 cut(s) 101, 329, 442
RseI CAYNNNNRTG 1 cut(s) 492
SacI GAGCTC 1 cut(s) 479
SapI GCTCTTC 1 cut(s) 484
SaqAI TTAA 2 cut(s) 57, 522
Sau3AI GATC 1 cut(s) 384
Sau96I GGNCC 4 cut(s) 157, 172, 186, 267
SchI GAGTC 1 cut(s) 401
ScrFI CCNGG 3 cut(s) 19, 176, 265
SduI GDGCHC 5 cut(s) 24, 68, 93, 231, 479
SinI GGWCC 2 cut(s) 157, 172
SmiMI CAYNNNNRTG 1 cut(s) 492
SmlI CTYRAG 2 cut(s) 113, 521
SmoI CTYRAG 2 cut(s) 113, 521
Sse9I AATT 2 cut(s) 36, 509
SsiI CCGC 1 cut(s) 529
SstI GAGCTC 1 cut(s) 479
StyD4I CCNGG 3 cut(s) 17, 174, 263
StyI CCWWGG 1 cut(s) 270
TaaI ACNGT 1 cut(s) 212
TaqI TCGA 4 cut(s) 24, 40, 93, 231
TasI AATT 2 cut(s) 36, 509
TatI WGTACW 1 cut(s) 328
Tru1I TTAA 2 cut(s) 57, 522
Tru9I TTAA 2 cut(s) 57, 522
TscAI CASTG 3 cut(s) 215, 231, 402
TseFI GTSAC 1 cut(s) 393
Tsp45I GTSAC 1 cut(s) 393
TspRI CASTG 3 cut(s) 215, 231, 402
Vha464I CTTAAG 1 cut(s) 521
VpaK11BI GGWCC 2 cut(s) 157, 172
XapI RAATTY 1 cut(s) 36
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.