Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8368091.1

Orthogroup ID

OG0003168

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 1038

Gene Structure 1037 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8368091.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1037 bp

atgctagcactcctcgacctaaccaatcaactagccctccgcgccctcaccataacaatcgttgtcacccccagaaacctcccaatcctcacacctctcctctcaacccacccctcaatccaaaccctcgtcctcccatttccttcacaccccaaaataccccccggcgtcgaaaacgtcaaggacatcggcaaccacggcaacctcgccatcataaacgccctcgccaacctccacgacccgatcatccagtggttcaagtcccaccctaacccccctgtggctctcatctcagatttctttctcggccacactctccgcctcgctgaccacctcaaaatacctagaataagcttctcctcgaccagagctttcttggccttgattctcgagtactgttggcgaaacctagatctggtccagtcctcgtcggcggttattgacttcccctctgttcctcggtcgccgtcgttgaaaagggagcacttgccgtcgattgtgttggctcacagaggaacggatcccgagtctgagctcctgagggtttccatgcttgccaataccgacagttggggctgtgttttcaatacctttcaagacttggagggtgagtatttggatcacttgaggagaagaatgggccacaaccgggtttacagtgtcggcccactgagtctgattggtgccgaagatggtggtttggatcgggccaacctgaacacgggttccggtggcgatttaatggcgtggcttgacgggtgtcccgatgggtctgtgctgtacgttggttttgggagtcaaaaattgttgaatagtaaacagatggaggcgttagctagtgggctcgagcggagcggggtgagatttgtgtgggctgtgaaaacgggctcggcccaagaagcgaaggacgggtacggtgttgtgcccgaggggtttgaggagcgggttgccgggcgaggctggctggtgaaaggttgggcgccgcaggtgttgatattgggtcaccgggccgtgggcggattcgtgagccattgcgg

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0008194 GO:0016740 GO:0016757 GO:0016758 GO:0035251 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046527 GO:0080043 GO:0080044

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UDPGT

Protein Analysis

346

Amino Acids

37.71

Weight (kDa)

6.9

Isoelectric Point (pI)

34.5

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003168)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G51210 AT5G03490
fragaria_vesca	FvH4_4g29060 FvH4_4g29061
malus_domestica	MD16G1054300.v1.1 MD16G1054500.v1.1 MD16G1054600.v1.1
prunus_persica	Prupe.1G295300_v2.0.a1
pyrus_communis	pycom16g04730 pycom16g04740 pycom16g04750
rosa_chinensis	RchiOBHm_Chr4g0437141 RchiOBHm_Chr4g0437161
rosa_laevigata	RLG00000006459 RLG00000006463 RLG00000006464 RLG00000009364
rosa_multiflora	Rmu_co8368091.1_g000001 Rmu_sc0000591.1_g000008 Rmu_sc0000591.1_g000012 Rmu_sc0017900.1_g000001 Rmu_sc0017900.1_g000006 Rmu_ssc0000006.1_g000001
rosa_roxburghii	Rroxscaffold_5G00378220 Rroxscaffold_5G00378300
rosa_rugosa	Rorug04G0298300 Rorug04G0298400.1
rosa_samantha	Rh4AG353300 Rh4BG362900 Rh4BG363000 Rh4BG363200 Rh4CG377100 Rh4CG377300 Rh4DG356800 Rh4DG357000
rosa_wichuraiana	Rw4G030950 Rw4G030960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	976
Acc36I	ACCTGC	1 cut(s)	976
AccB1I	GGYRCC	2 cut(s)	683, 979
AccBSI	CCGCTC	3 cut(s)	850, 855, 943
AccII	CGCG	1 cut(s)	42
AciI	CCGC	9 cut(s)	40, 319, 434, 850, 855, 943, 983, 1017, 1035
AclWI	GGATC	4 cut(s)	515, 528, 627, 711
AcoI	YGGCCR	1 cut(s)	307
AcyI	GRCGYC	2 cut(s)	168, 980
AfaI	GTAC	3 cut(s)	395, 782, 914
AfiI	CCNNNNNNNGG	6 cut(s)	280, 415, 570, 649, 721, 1012
AgsI	TTSAA	5 cut(s)	259, 475, 586, 596, 811
AloI	GAACNNNNNNTCC	2 cut(s)	710, 742
AluBI	AGCT	4 cut(s)	354, 371, 535, 836
AluI	AGCT	4 cut(s)	354, 371, 535, 836
Alw21I	GWGCWC	2 cut(s)	486, 537
AlwI	GGATC	4 cut(s)	515, 528, 627, 711
Ama87I	CYCGRG	4 cut(s)	389, 524, 845, 926
AoxI	GGCC	7 cut(s)	307, 378, 640, 664, 708, 891, 1008
AspLEI	GCGC	2 cut(s)	44, 982
AspS9I	GGNCC	6 cut(s)	418, 640, 665, 708, 892, 1008
AsuC2I	CCSGG	4 cut(s)	165, 650, 952, 1007
AsuHPI	GGTGA	6 cut(s)	40, 58, 620, 871, 979, 995
AsuNHI	GCTAGC	1 cut(s)	4
AvaI	CYCGRG	4 cut(s)	389, 524, 845, 926
AvaII	GGWCC	1 cut(s)	418
AxyI	CCTNAGG	1 cut(s)	539
BaeGI	GKGCMC	1 cut(s)	927
BamHI	GGATCC	1 cut(s)	520
BanI	GGYRCC	2 cut(s)	683, 979
BanII	GRGCYC	3 cut(s)	537, 846, 890
BarI	GAAGNNNNNNTAC	2 cut(s)	896, 928
Bbv12I	GWGCWC	2 cut(s)	486, 537
BccI	CCATC	4 cut(s)	218, 686, 761, 817
BceAI	ACGGC	4 cut(s)	214, 451, 475, 995
BcnI	CCSGG	4 cut(s)	165, 650, 952, 1007
BfaI	CTAG	5 cut(s)	5, 32, 345, 410, 837
BfoI	RGCGCY	1 cut(s)	983
BfuAI	ACCTGC	1 cut(s)	976
BglII	AGATCT	1 cut(s)	412
BisI	GCNGC	1 cut(s)	983
BlsI	GCNGC	1 cut(s)	984
BmcAI	AGTACT	1 cut(s)	395
Bme1390I	CCNGG	4 cut(s)	165, 650, 952, 1007
Bme18I	GGWCC	1 cut(s)	418
BmeT110I	CYCGRG	4 cut(s)	389, 524, 845, 926
BmgT120I	GGNCC	6 cut(s)	418, 640, 665, 708, 892, 1008
BmiI	GGNNCC	4 cut(s)	522, 685, 727, 981
BmrFI	CCNGG	4 cut(s)	165, 650, 952, 1007
BmtI	GCTAGC	1 cut(s)	8
BoxI	GACNNNNGTC	1 cut(s)	759
BpuEI	CTTGAG	1 cut(s)	646
BpuMI	CCSGG	4 cut(s)	165, 650, 952, 1007
BsaHI	GRCGYC	2 cut(s)	168, 980
BsaJI	CCNNGG	5 cut(s)	163, 196, 458, 927, 1011
BsaWI	WCCGGW	1 cut(s)	728
BsaXI	ACNNNNNCTCC	4 cut(s)	21, 51, 596, 626
Bsc4I	CCNNNNNNNGG	6 cut(s)	280, 415, 570, 649, 721, 1012
Bse1I	ACTGG	2 cut(s)	250, 421
Bse21I	CCTNAGG	1 cut(s)	539
Bse3DI	GCAATG	1 cut(s)	1030
BseDI	CCNNGG	5 cut(s)	163, 196, 458, 927, 1011
BseGI	GGATG	1 cut(s)	246
BseLI	CCNNNNNNNGG	6 cut(s)	280, 415, 570, 649, 721, 1012
BseMI	GCAATG	1 cut(s)	1030
BseMII	CTCAG	4 cut(s)	306, 522, 530, 662
BseNI	ACTGG	2 cut(s)	250, 421
BseRI	GAGGAG	4 cut(s)	89, 349, 643, 953
BseSI	GKGCMC	1 cut(s)	927
Bsh1236I	CGCG	1 cut(s)	42
Bsh1285I	CGRYCG	1 cut(s)	464
BshFI	GGCC	7 cut(s)	309, 380, 642, 666, 710, 893, 1010
BshNI	GGYRCC	2 cut(s)	683, 979
BsiEI	CGRYCG	1 cut(s)	464
BsiHKAI	GWGCWC	2 cut(s)	486, 537
BsiHKCI	CYCGRG	4 cut(s)	389, 524, 845, 926
BsiSI	CCGG	5 cut(s)	165, 649, 729, 951, 1006
BslFI	GGGAC	2 cut(s)	247, 747
BslI	CCNNNNNNNGG	6 cut(s)	280, 415, 570, 649, 721, 1012
BsmFI	GGGAC	2 cut(s)	247, 747
BsnI	GGCC	7 cut(s)	309, 380, 642, 666, 710, 893, 1010
BsoBI	CYCGRG	4 cut(s)	389, 524, 845, 926
Bsp1286I	GDGCHC	5 cut(s)	486, 537, 846, 890, 927
Bsp143I	GATC	5 cut(s)	243, 412, 520, 619, 703
BspACI	CCGC	9 cut(s)	40, 319, 434, 850, 855, 943, 983, 1017, 1035
BspANI	GGCC	7 cut(s)	309, 380, 642, 666, 710, 893, 1010
BspCNI	CTCAG	4 cut(s)	305, 523, 531, 663
BspFNI	CGCG	1 cut(s)	42
BspLI	GGNNCC	4 cut(s)	522, 685, 727, 981
BspMI	ACCTGC	1 cut(s)	976
BspOI	GCTAGC	1 cut(s)	8
BspPI	GGATC	4 cut(s)	515, 528, 627, 711
BspT107I	GGYRCC	2 cut(s)	683, 979
BsrBI	CCGCTC	3 cut(s)	850, 855, 943
BsrDI	GCAATG	1 cut(s)	1030
BsrI	ACTGG	2 cut(s)	250, 421
BssECI	CCNNGG	5 cut(s)	163, 196, 458, 927, 1011
BssMI	GATC	5 cut(s)	243, 412, 520, 619, 703
BssNI	GRCGYC	2 cut(s)	168, 980
Bst4CI	ACNGT	4 cut(s)	398, 569, 659, 917
BstACI	GRCGYC	2 cut(s)	168, 980
BstC8I	GCNNGC	3 cut(s)	6, 555, 962
BstDEI	CTNAG	4 cut(s)	292, 531, 539, 671
BstDSI	CCRYGG	2 cut(s)	196, 1011
BstEII	GGTNACC	1 cut(s)	1001
BstF5I	GGATG	1 cut(s)	246
BstFNI	CGCG	1 cut(s)	42
BstH2I	RGCGCY	1 cut(s)	983
BstHHI	GCGC	2 cut(s)	44, 982
BstKTI	GATC	5 cut(s)	246, 415, 523, 622, 706
BstMBI	GATC	5 cut(s)	243, 412, 520, 619, 703
BstMCI	CGRYCG	1 cut(s)	464
BstMWI	GCNNNNNNNGC	5 cut(s)	41, 198, 377, 899, 961
BstPAI	GACNNNNGTC	1 cut(s)	759
BstPI	GGTNACC	1 cut(s)	1001
BstSCI	CCNGG	4 cut(s)	163, 648, 950, 1005
BstSLI	GKGCMC	1 cut(s)	927
BstUI	CGCG	1 cut(s)	42
BstX2I	RGATCY	2 cut(s)	412, 520
BstYI	RGATCY	2 cut(s)	412, 520
Bsu36I	CCTNAGG	1 cut(s)	539
BsuRI	GGCC	7 cut(s)	309, 380, 642, 666, 710, 893, 1010
BtgI	CCRYGG	2 cut(s)	196, 1011
BtsCI	GGATG	1 cut(s)	246
BtsIMutI	CAGTG	3 cut(s)	257, 664, 668
BveI	ACCTGC	1 cut(s)	976
Cac8I	GCNNGC	3 cut(s)	6, 555, 962
CfoI	GCGC	2 cut(s)	44, 982
Cfr13I	GGNCC	6 cut(s)	418, 640, 665, 708, 892, 1008
CseI	GACGC	1 cut(s)	157
Csp6I	GTAC	3 cut(s)	394, 781, 913
CviAII	CATG	1 cut(s)	550
CviQI	GTAC	3 cut(s)	394, 781, 913
DdeI	CTNAG	4 cut(s)	292, 531, 539, 671
DinI	GGCGCC	1 cut(s)	981
DpnI	GATC	5 cut(s)	245, 414, 522, 621, 705
DpnII	GATC	5 cut(s)	243, 412, 520, 619, 703
EaeI	YGGCCR	1 cut(s)	307
EciI	GGCGGA	2 cut(s)	308, 1032
Ecl136II	GAGCTC	1 cut(s)	535
Eco24I	GRGCYC	3 cut(s)	537, 846, 890
Eco47I	GGWCC	1 cut(s)	418
Eco53kI	GAGCTC	1 cut(s)	535
Eco81I	CCTNAGG	1 cut(s)	539
Eco88I	CYCGRG	4 cut(s)	389, 524, 845, 926
Eco91I	GGTNACC	1 cut(s)	1001
EcoICRI	GAGCTC	1 cut(s)	535
EcoO65I	GGTNACC	1 cut(s)	1001
EcoT38I	GRGCYC	3 cut(s)	537, 846, 890
EgeI	GGCGCC	1 cut(s)	981
EheI	GGCGCC	1 cut(s)	981
FaeI	CATG	1 cut(s)	553
FaiI	YATR	3 cut(s)	53, 215, 551
FaqI	GGGAC	2 cut(s)	247, 747
FatI	CATG	1 cut(s)	549
FauI	CCCGC	2 cut(s)	848, 936
Fnu4HI	GCNGC	1 cut(s)	983
FokI	GGATG	1 cut(s)	233
FriOI	GRGCYC	3 cut(s)	537, 846, 890
Fsp4HI	GCNGC	1 cut(s)	983
FspBI	CTAG	5 cut(s)	5, 32, 345, 410, 837
GlaI	GCGC	2 cut(s)	43, 981
GluI	GCNGC	1 cut(s)	983
HaeII	RGCGCY	1 cut(s)	983
HaeIII	GGCC	7 cut(s)	309, 380, 642, 666, 710, 893, 1010
HapII	CCGG	5 cut(s)	165, 649, 729, 951, 1006
HgaI	GACGC	1 cut(s)	157
HhaI	GCGC	2 cut(s)	44, 982
Hin1I	GRCGYC	2 cut(s)	168, 980
Hin1II	CATG	1 cut(s)	553
Hin6I	GCGC	2 cut(s)	42, 980
HinP1I	GCGC	2 cut(s)	42, 980
HindIII	AAGCTT	1 cut(s)	352
HinfI	GANTC	5 cut(s)	385, 527, 673, 796, 1020
HpaII	CCGG	5 cut(s)	165, 649, 729, 951, 1006
HphI	GGTGA	6 cut(s)	40, 58, 620, 871, 979, 995
Hpy166II	GTNNAC	2 cut(s)	655, 818
Hpy188I	TCNGA	3 cut(s)	295, 532, 678
Hpy188III	TCNNGA	6 cut(s)	389, 524, 538, 596, 764, 1024
Hpy8I	GTNNAC	2 cut(s)	655, 818
Hpy99I	CGWCG	4 cut(s)	173, 433, 472, 496
HpyAV	CCTTC	2 cut(s)	153, 898
HpyCH4III	ACNGT	4 cut(s)	398, 569, 659, 917
HpyCH4IV	ACGT	2 cut(s)	177, 783
HpyF10VI	GCNNNNNNNGC	5 cut(s)	41, 198, 377, 899, 961
HpyF3I	CTNAG	4 cut(s)	292, 531, 539, 671
HpySE526I	ACGT	2 cut(s)	177, 783
Hsp92I	GRCGYC	2 cut(s)	168, 980
Hsp92II	CATG	1 cut(s)	553
HspAI	GCGC	2 cut(s)	42, 980
KasI	GGCGCC	1 cut(s)	979
Kzo9I	GATC	5 cut(s)	243, 412, 520, 619, 703
LmnI	GCTCC	4 cut(s)	481, 540, 852, 940
MaeI	CTAG	5 cut(s)	5, 32, 345, 410, 837
MaeII	ACGT	2 cut(s)	177, 783
MaeIII	GTNAC	2 cut(s)	64, 1001
MalI	GATC	5 cut(s)	245, 414, 522, 621, 705
MbiI	CCGCTC	3 cut(s)	850, 855, 943
MboI	GATC	5 cut(s)	243, 412, 520, 619, 703
MboII	GAAGA	2 cut(s)	645, 701
MflI	RGATCY	2 cut(s)	412, 520
MhlI	GDGCHC	5 cut(s)	486, 537, 846, 890, 927
MluCI	AATT	1 cut(s)	803
Mly113I	GGCGCC	1 cut(s)	980
MlyI	GAGTC	3 cut(s)	536, 682, 805
MseI	TTAA	1 cut(s)	740
MspI	CCGG	5 cut(s)	165, 649, 729, 951, 1006
MspR9I	CCNGG	4 cut(s)	165, 650, 952, 1007
MvnI	CGCG	1 cut(s)	42
MwoI	GCNNNNNNNGC	5 cut(s)	41, 198, 377, 899, 961
NarI	GGCGCC	1 cut(s)	980
NciI	CCSGG	4 cut(s)	165, 650, 952, 1007
NdeII	GATC	5 cut(s)	243, 412, 520, 619, 703
NheI	GCTAGC	1 cut(s)	4
NlaIII	CATG	1 cut(s)	553
NlaIV	GGNNCC	4 cut(s)	522, 685, 727, 981
NmeAIII	GCCGAG	2 cut(s)	285, 869
NmuCI	GTSAC	2 cut(s)	64, 1001
PaeR7I	CTCGAG	2 cut(s)	389, 845
PaqCI	CACCTGC	1 cut(s)	976
PcsI	WCGNNNNNNNCGW	1 cut(s)	762
PfeI	GAWTC	2 cut(s)	385, 1020
PkrI	GCNGC	1 cut(s)	984
PleI	GAGTC	3 cut(s)	535, 681, 804
PluTI	GGCGCC	1 cut(s)	983
PpsI	GAGTC	3 cut(s)	535, 681, 804
PshAI	GACNNNNGTC	1 cut(s)	759
Psp124BI	GAGCTC	1 cut(s)	537
PspEI	GGTNACC	1 cut(s)	1001
PspN4I	GGNNCC	4 cut(s)	522, 685, 727, 981
PspPI	GGNCC	6 cut(s)	418, 640, 665, 708, 892, 1008
PspXI	VCTCGAGB	1 cut(s)	845
PsuI	RGATCY	2 cut(s)	412, 520
RsaI	GTAC	3 cut(s)	395, 782, 914
RsaNI	GTAC	3 cut(s)	394, 781, 913
SacI	GAGCTC	1 cut(s)	537
SaqAI	TTAA	1 cut(s)	740
SatI	GCNGC	1 cut(s)	983
Sau3AI	GATC	5 cut(s)	243, 412, 520, 619, 703
Sau96I	GGNCC	6 cut(s)	418, 640, 665, 708, 892, 1008
ScaI	AGTACT	1 cut(s)	395
SchI	GAGTC	3 cut(s)	536, 682, 805
ScrFI	CCNGG	4 cut(s)	165, 650, 952, 1007
SduI	GDGCHC	5 cut(s)	486, 537, 846, 890, 927
SfoI	GGCGCC	1 cut(s)	981
Sfr274I	CTCGAG	2 cut(s)	389, 845
SinI	GGWCC	1 cut(s)	418
SlaI	CTCGAG	2 cut(s)	389, 845
SmlI	CTYRAG	3 cut(s)	389, 625, 845
SmoI	CTYRAG	3 cut(s)	389, 625, 845
Sse9I	AATT	1 cut(s)	803
SsiI	CCGC	9 cut(s)	40, 319, 434, 850, 855, 943, 983, 1017, 1035
SspDI	GGCGCC	1 cut(s)	979
SspMI	CTAG	5 cut(s)	5, 32, 345, 410, 837
SstI	GAGCTC	1 cut(s)	537
StyD4I	CCNGG	4 cut(s)	163, 648, 950, 1005
TaaI	ACNGT	4 cut(s)	398, 569, 659, 917
TaiI	ACGT	2 cut(s)	180, 786
TaqI	TCGA	6 cut(s)	15, 171, 362, 390, 494, 846
TaqII	GACCGA	1 cut(s)	450
TasI	AATT	1 cut(s)	803
TatI	WGTACW	1 cut(s)	393
TauI	GCSGC	1 cut(s)	985
TfiI	GAWTC	2 cut(s)	385, 1020
Tru1I	TTAA	1 cut(s)	740
Tru9I	TTAA	1 cut(s)	740
TscAI	CASTG	3 cut(s)	257, 664, 675
TseFI	GTSAC	2 cut(s)	64, 1001
Tsp45I	GTSAC	2 cut(s)	64, 1001
TspGWI	ACGGA	1 cut(s)	533
TspRI	CASTG	3 cut(s)	257, 664, 675
VpaK11BI	GGWCC	1 cut(s)	418
XcmI	CCANNNNNNNNNTGG	1 cut(s)	373
XhoI	CTCGAG	2 cut(s)	389, 845
XspI	CTAG	5 cut(s)	5, 32, 345, 410, 837
ZrmI	AGTACT	1 cut(s)	395

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.