Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr16

Orthogroup ID

OG0003168

Physical Location & Seq

Genomic Coordinates Forward (+)

3054870 .. 3055763

Gene Structure 894 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom16g04750.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 894 bp

ATGGACGCCCTCACCAACCTCCACGACCCCATCGTCCACTGGTTCAACTCCCACCCCAACCCCCCTACCGCCATCATCTCCGACTTCTTCCTCGGCTGGACCTTGCCCCTGGCCCGCCGGCTAGGTATTCACAGAATCACTTTCTACTCTTCTGGTGCTTTCTTGGCATCTATTGCAGATCGATCCTGGTGTAATTTAGATGTCATCAAGTCATCTCTAGCTGAATTTCCTGATGTTCCTCGATCACCCTCGTTCAAAGCAGAGCATTTGCCTTCCACGTTCCGCTACTACAGAGAATCGGAGCCCGACTCAGAGCGTTTGAGGAATGCCATGCTAGCCAATACCGAAAGTTGGGGATGCGTATTTAATAGCTTTCATGAGTTGGAAGGAGAGTATTTGCAACACTTGAGGACAAAAATGGGCCACCCCCGTGTTTACGGGGTAGGCCCATTGAGCCTACTTGCTTCCGCCGCTAATGGCGGAAACTTGGAACGGGCCAACCCGAACACAGGCACGGGGAAAGATAACGTGCTCACATGGCTTGATGGGTGCCCGGATGGGTCTGTGCTGTATGTTTGCTTTGGAAGTCAGGCGTTGCTCAATAAGCTGCAGATGGAGGCATTGGCTTCTGGGCTGGAACAGAGTGGGGCTCGGTTTGTGTGGGTTGTGAAAACGGGCTTGTCCGGGAAGGTGAATGATGGGTCCGGAGTTGTACCAGATGGGTTTGAGGAAAGGGTTGCTGGGAGGGGATTGCTGATAAAGGGCTGGGCGCCGCAGGTGATCGATCCTCGGCCACCGGGCGGTTGGAGGGTTTCTGAGCCACTGTGGGTGGAACTCTGTGCTGGAAGGGATTGTGGGTGGGGTTTTGATATTGACCTGGCCTATGCAGGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0008194 GO:0016740 GO:0016757 GO:0016758 GO:0035251 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046527 GO:0080043 GO:0080044

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UDPGT

Protein Analysis

298

Amino Acids

32.6

Weight (kDa)

5.76

Isoelectric Point (pI)

33.7

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003168)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G51210 AT5G03490
fragaria_vesca	FvH4_4g29060 FvH4_4g29061
malus_domestica	MD16G1054300.v1.1 MD16G1054500.v1.1 MD16G1054600.v1.1
prunus_persica	Prupe.1G295300_v2.0.a1
pyrus_communis	pycom16g04730 pycom16g04740 pycom16g04750
rosa_chinensis	RchiOBHm_Chr4g0437141 RchiOBHm_Chr4g0437161
rosa_laevigata	RLG00000006459 RLG00000006463 RLG00000006464 RLG00000009364
rosa_multiflora	Rmu_co8368091.1_g000001 Rmu_sc0000591.1_g000008 Rmu_sc0000591.1_g000012 Rmu_sc0017900.1_g000001 Rmu_sc0017900.1_g000006 Rmu_ssc0000006.1_g000001
rosa_roxburghii	Rroxscaffold_5G00378220 Rroxscaffold_5G00378300
rosa_rugosa	Rorug04G0298300 Rorug04G0298400.1
rosa_samantha	Rh4AG353300 Rh4BG362900 Rh4BG363000 Rh4BG363200 Rh4CG377100 Rh4CG377300 Rh4DG356800 Rh4DG357000
rosa_wichuraiana	Rw4G030950 Rw4G030960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	766
AasI	GACNNNNNNGTC	1 cut(s)	32
Acc36I	ACCTGC	1 cut(s)	766
AccB1I	GGYRCC	2 cut(s)	549, 769
AccIII	TCCGGA	1 cut(s)	704
AciI	CCGC	8 cut(s)	69, 115, 283, 468, 471, 480, 773, 801
AclWI	GGATC	2 cut(s)	177, 779
AcoI	YGGCCR	1 cut(s)	791
AcsI	RAATTY	1 cut(s)	224
AcyI	GRCGYC	2 cut(s)	6, 770
AfaI	GTAC	1 cut(s)	714
AfiI	CCNNNNNNNGG	3 cut(s)	351, 509, 800
AgsI	TTSAA	2 cut(s)	46, 256
AjnI	CCWGG	3 cut(s)	108, 185, 876
AleI	CACNNNNGTG	1 cut(s)	429
AluBI	AGCT	3 cut(s)	221, 372, 607
AluI	AGCT	3 cut(s)	221, 372, 607
Alw21I	GWGCWC	1 cut(s)	534
AlwI	GGATC	2 cut(s)	177, 779
Aor13HI	TCCGGA	1 cut(s)	704
AoxI	GGCC	6 cut(s)	111, 421, 445, 495, 791, 879
ApeKI	GCWGC	1 cut(s)	607
ApoI	RAATTY	1 cut(s)	224
AspLEI	GCGC	1 cut(s)	772
AspS9I	GGNCC	6 cut(s)	99, 112, 421, 446, 495, 702
AsuC2I	CCSGG	3 cut(s)	554, 685, 798
AsuHPI	GGTGA	4 cut(s)	4, 237, 703, 790
AsuNHI	GCTAGC	1 cut(s)	334
AvaII	GGWCC	2 cut(s)	99, 702
BaeGI	GKGCMC	1 cut(s)	554
BanI	GGYRCC	2 cut(s)	549, 769
BanII	GRGCYC	2 cut(s)	306, 652
Bbv12I	GWGCWC	1 cut(s)	534
BbvI	GCAGC	1 cut(s)	594
BccI	CCATC	7 cut(s)	38, 80, 539, 551, 607, 692, 713
BciT130I	CCWGG	3 cut(s)	110, 187, 878
BcnI	CCSGG	3 cut(s)	554, 685, 798
BfaI	CTAG	3 cut(s)	122, 218, 335
BfmI	CTRYAG	2 cut(s)	289, 608
BfoI	RGCGCY	1 cut(s)	773
BfuAI	ACCTGC	1 cut(s)	766
BisI	GCNGC	3 cut(s)	471, 608, 773
BlsI	GCNGC	3 cut(s)	472, 609, 774
Bme1390I	CCNGG	6 cut(s)	110, 187, 554, 685, 798, 878
Bme18I	GGWCC	2 cut(s)	99, 702
BmgT120I	GGNCC	6 cut(s)	99, 112, 421, 446, 495, 702
BmiI	GGNNCC	4 cut(s)	303, 551, 703, 771
BmrFI	CCNGG	6 cut(s)	110, 187, 554, 685, 798, 878
BmsI	GCATC	2 cut(s)	176, 347
BmtI	GCTAGC	1 cut(s)	338
BplI	GAGNNNNNCTC	4 cut(s)	293, 325, 634, 666
BpuEI	CTTGAG	1 cut(s)	427
BpuMI	CCSGG	3 cut(s)	554, 685, 798
Bsa29I	ATCGAT	2 cut(s)	181, 783
BsaHI	GRCGYC	2 cut(s)	6, 770
BsaJI	CCNNGG	3 cut(s)	91, 108, 788
BsaWI	WCCGGW	1 cut(s)	704
Bsc4I	CCNNNNNNNGG	3 cut(s)	351, 509, 800
Bse118I	RCCGGY	1 cut(s)	117
Bse1I	ACTGG	1 cut(s)	44
BseAI	TCCGGA	1 cut(s)	704
BseBI	CCWGG	3 cut(s)	110, 187, 878
BseCI	ATCGAT	2 cut(s)	181, 783
BseDI	CCNNGG	3 cut(s)	91, 108, 788
BseGI	GGATG	2 cut(s)	362, 562
BseLI	CCNNNNNNNGG	3 cut(s)	351, 509, 800
BseMII	CTCAG	2 cut(s)	324, 807
BseNI	ACTGG	1 cut(s)	44
BseSI	GKGCMC	1 cut(s)	554
BseXI	GCAGC	1 cut(s)	594
BseYI	CCCAGC	2 cut(s)	740, 765
BshFI	GGCC	6 cut(s)	113, 423, 447, 497, 793, 881
BshNI	GGYRCC	2 cut(s)	549, 769
BshVI	ATCGAT	2 cut(s)	181, 783
BsiHKAI	GWGCWC	1 cut(s)	534
BsiSI	CCGG	5 cut(s)	118, 554, 684, 705, 797
BslI	CCNNNNNNNGG	3 cut(s)	351, 509, 800
BsmI	GAATGC	1 cut(s)	331
BsnI	GGCC	6 cut(s)	113, 423, 447, 497, 793, 881
Bsp1286I	GDGCHC	4 cut(s)	306, 534, 554, 652
Bsp13I	TCCGGA	1 cut(s)	704
Bsp143I	GATC	5 cut(s)	178, 182, 242, 780, 784
BspACI	CCGC	8 cut(s)	69, 115, 283, 468, 471, 480, 773, 801
BspANI	GGCC	6 cut(s)	113, 423, 447, 497, 793, 881
BspCNI	CTCAG	2 cut(s)	323, 808
BspDI	ATCGAT	2 cut(s)	181, 783
BspEI	TCCGGA	1 cut(s)	704
BspHI	TCATGA	1 cut(s)	376
BspLI	GGNNCC	4 cut(s)	303, 551, 703, 771
BspMAI	CTGCAG	1 cut(s)	612
BspMI	ACCTGC	1 cut(s)	766
BspOI	GCTAGC	1 cut(s)	338
BspPI	GGATC	2 cut(s)	177, 779
BspT107I	GGYRCC	2 cut(s)	549, 769
BsrFI	RCCGGY	1 cut(s)	117
BsrI	ACTGG	1 cut(s)	44
BssAI	RCCGGY	1 cut(s)	117
BssECI	CCNNGG	3 cut(s)	91, 108, 788
BssMI	GATC	5 cut(s)	178, 182, 242, 780, 784
BssNI	GRCGYC	2 cut(s)	6, 770
Bst2UI	CCWGG	3 cut(s)	110, 187, 878
Bst4CI	ACNGT	1 cut(s)	825
Bst6I	CTCTTC	1 cut(s)	154
BstACI	GRCGYC	2 cut(s)	6, 770
BstAPI	GCANNNNNTGC	1 cut(s)	173
BstC8I	GCNNGC	4 cut(s)	115, 119, 336, 889
BstDEI	CTNAG	2 cut(s)	310, 816
BstF5I	GGATG	2 cut(s)	362, 562
BstH2I	RGCGCY	1 cut(s)	773
BstHHI	GCGC	1 cut(s)	772
BstKTI	GATC	5 cut(s)	181, 185, 245, 783, 787
BstMBI	GATC	5 cut(s)	178, 182, 242, 780, 784
BstMWI	GCNNNNNNNGC	7 cut(s)	164, 173, 335, 453, 470, 538, 604
BstNI	CCWGG	3 cut(s)	110, 187, 878
BstSCI	CCNGG	6 cut(s)	108, 185, 552, 683, 796, 876
BstSFI	CTRYAG	2 cut(s)	289, 608
BstSLI	GKGCMC	1 cut(s)	554
BstV1I	GCAGC	1 cut(s)	594
Bsu15I	ATCGAT	2 cut(s)	181, 783
BsuRI	GGCC	6 cut(s)	113, 423, 447, 497, 793, 881
BsuTUI	ATCGAT	2 cut(s)	181, 783
BtsCI	GGATG	2 cut(s)	362, 562
BtsIMutI	CAGTG	2 cut(s)	37, 821
BveI	ACCTGC	1 cut(s)	766
Cac8I	GCNNGC	4 cut(s)	115, 119, 336, 889
CciI	TCATGA	1 cut(s)	376
CfoI	GCGC	1 cut(s)	772
Cfr10I	RCCGGY	1 cut(s)	117
Cfr13I	GGNCC	6 cut(s)	99, 112, 421, 446, 495, 702
ClaI	ATCGAT	2 cut(s)	181, 783
CseI	GACGC	1 cut(s)	14
Csp6I	GTAC	1 cut(s)	713
CviAII	CATG	3 cut(s)	331, 377, 537
CviQI	GTAC	1 cut(s)	713
DdeI	CTNAG	2 cut(s)	310, 816
DinI	GGCGCC	1 cut(s)	771
DpnI	GATC	5 cut(s)	180, 184, 244, 782, 786
DpnII	GATC	5 cut(s)	178, 182, 242, 780, 784
DrdI	GACNNNNNNGTC	1 cut(s)	32
DseDI	GACNNNNNNGTC	1 cut(s)	32
EaeI	YGGCCR	1 cut(s)	791
Eam1104I	CTCTTC	1 cut(s)	154
EarI	CTCTTC	1 cut(s)	154
EciI	GGCGGA	2 cut(s)	457, 495
Eco24I	GRGCYC	2 cut(s)	306, 652
Eco47I	GGWCC	2 cut(s)	99, 702
EcoRII	CCWGG	3 cut(s)	108, 185, 876
EcoT38I	GRGCYC	2 cut(s)	306, 652
EgeI	GGCGCC	1 cut(s)	771
EheI	GGCGCC	1 cut(s)	771
FaeI	CATG	3 cut(s)	334, 380, 540
FaiI	YATR	5 cut(s)	332, 378, 538, 573, 885
FatI	CATG	3 cut(s)	330, 376, 536
FauI	CCCGC	1 cut(s)	122
Fnu4HI	GCNGC	3 cut(s)	471, 608, 773
FokI	GGATG	2 cut(s)	369, 569
FriOI	GRGCYC	2 cut(s)	306, 652
Fsp4HI	GCNGC	3 cut(s)	471, 608, 773
FspBI	CTAG	3 cut(s)	122, 218, 335
GlaI	GCGC	1 cut(s)	771
GluI	GCNGC	3 cut(s)	471, 608, 773
GsaI	CCCAGC	2 cut(s)	744, 769
HaeII	RGCGCY	1 cut(s)	773
HaeIII	GGCC	6 cut(s)	113, 423, 447, 497, 793, 881
HapII	CCGG	5 cut(s)	118, 554, 684, 705, 797
HgaI	GACGC	1 cut(s)	14
HhaI	GCGC	1 cut(s)	772
Hin1I	GRCGYC	2 cut(s)	6, 770
Hin1II	CATG	3 cut(s)	334, 380, 540
Hin6I	GCGC	1 cut(s)	770
HinP1I	GCGC	1 cut(s)	770
HinfI	GANTC	3 cut(s)	135, 296, 308
HpaII	CCGG	5 cut(s)	118, 554, 684, 705, 797
HphI	GGTGA	4 cut(s)	4, 237, 703, 790
Hpy166II	GTNNAC	2 cut(s)	37, 436
Hpy188I	TCNGA	4 cut(s)	82, 301, 313, 817
Hpy188III	TCNNGA	3 cut(s)	230, 377, 705
Hpy8I	GTNNAC	2 cut(s)	37, 436
HpyAV	CCTTC	4 cut(s)	282, 380, 682, 840
HpyCH4III	ACNGT	1 cut(s)	825
HpyCH4IV	ACGT	2 cut(s)	278, 528
HpyCH4V	TGCA	4 cut(s)	176, 400, 610, 887
HpyF10VI	GCNNNNNNNGC	7 cut(s)	164, 173, 335, 453, 470, 538, 604
HpyF3I	CTNAG	2 cut(s)	310, 816
HpySE526I	ACGT	2 cut(s)	278, 528
Hsp92I	GRCGYC	2 cut(s)	6, 770
Hsp92II	CATG	3 cut(s)	334, 380, 540
HspAI	GCGC	1 cut(s)	770
KasI	GGCGCC	1 cut(s)	769
Kpn2I	TCCGGA	1 cut(s)	704
KroI	GCCGGC	1 cut(s)	117
KroNI	GCCGGC	1 cut(s)	119
Kzo9I	GATC	5 cut(s)	178, 182, 242, 780, 784
LmnI	GCTCC	1 cut(s)	301
Lsp1109I	GCAGC	1 cut(s)	594
LweI	GCATC	2 cut(s)	176, 347
MaeI	CTAG	3 cut(s)	122, 218, 335
MaeII	ACGT	2 cut(s)	278, 528
MalI	GATC	5 cut(s)	180, 184, 244, 782, 786
MboI	GATC	5 cut(s)	178, 182, 242, 780, 784
MboII	GAAGA	2 cut(s)	79, 141
MhlI	GDGCHC	4 cut(s)	306, 534, 554, 652
MluCI	AATT	2 cut(s)	193, 224
Mly113I	GGCGCC	1 cut(s)	770
MlyI	GAGTC	1 cut(s)	302
MmeI	TCCRAC	3 cut(s)	105, 363, 785
MroI	TCCGGA	1 cut(s)	704
MroNI	GCCGGC	1 cut(s)	117
MseI	TTAA	1 cut(s)	366
MslI	CAYNNNNRTG	1 cut(s)	429
MspI	CCGG	5 cut(s)	118, 554, 684, 705, 797
MspR9I	CCNGG	6 cut(s)	110, 187, 554, 685, 798, 878
Mva1269I	GAATGC	1 cut(s)	331
MvaI	CCWGG	3 cut(s)	110, 187, 878
MwoI	GCNNNNNNNGC	7 cut(s)	164, 173, 335, 453, 470, 538, 604
NaeI	GCCGGC	1 cut(s)	119
NarI	GGCGCC	1 cut(s)	770
NciI	CCSGG	3 cut(s)	554, 685, 798
NdeII	GATC	5 cut(s)	178, 182, 242, 780, 784
NgoMIV	GCCGGC	1 cut(s)	117
NheI	GCTAGC	1 cut(s)	334
NlaIII	CATG	3 cut(s)	334, 380, 540
NlaIV	GGNNCC	4 cut(s)	303, 551, 703, 771
NmeAIII	GCCGAG	2 cut(s)	72, 769
OliI	CACNNNNGTG	1 cut(s)	429
PagI	TCATGA	1 cut(s)	376
PaqCI	CACCTGC	1 cut(s)	766
PcsI	WCGNNNNNNNCGW	1 cut(s)	30
PctI	GAATGC	1 cut(s)	331
PdiI	GCCGGC	1 cut(s)	119
PfeI	GAWTC	2 cut(s)	135, 296
PfoI	TCCNGGA	1 cut(s)	683
PkrI	GCNGC	3 cut(s)	472, 609, 774
PleI	GAGTC	1 cut(s)	302
PluTI	GGCGCC	1 cut(s)	773
PpsI	GAGTC	1 cut(s)	302
Psp6I	CCWGG	3 cut(s)	108, 185, 876
PspFI	CCCAGC	2 cut(s)	740, 765
PspGI	CCWGG	3 cut(s)	108, 185, 876
PspN4I	GGNNCC	4 cut(s)	303, 551, 703, 771
PspPI	GGNCC	6 cut(s)	99, 112, 421, 446, 495, 702
PstI	CTGCAG	1 cut(s)	612
RsaI	GTAC	1 cut(s)	714
RsaNI	GTAC	1 cut(s)	713
RseI	CAYNNNNRTG	1 cut(s)	429
SaqAI	TTAA	1 cut(s)	366
SatI	GCNGC	3 cut(s)	471, 608, 773
Sau3AI	GATC	5 cut(s)	178, 182, 242, 780, 784
Sau96I	GGNCC	6 cut(s)	99, 112, 421, 446, 495, 702
SchI	GAGTC	1 cut(s)	302
ScrFI	CCNGG	6 cut(s)	110, 187, 554, 685, 798, 878
SduI	GDGCHC	4 cut(s)	306, 534, 554, 652
SfaNI	GCATC	2 cut(s)	176, 347
SfcI	CTRYAG	2 cut(s)	289, 608
SfoI	GGCGCC	1 cut(s)	771
SinI	GGWCC	2 cut(s)	99, 702
SmiMI	CAYNNNNRTG	1 cut(s)	429
SmlI	CTYRAG	1 cut(s)	406
SmoI	CTYRAG	1 cut(s)	406
Sse9I	AATT	2 cut(s)	193, 224
SsiI	CCGC	8 cut(s)	69, 115, 283, 468, 471, 480, 773, 801
SspDI	GGCGCC	1 cut(s)	769
SspMI	CTAG	3 cut(s)	122, 218, 335
StyD4I	CCNGG	6 cut(s)	108, 185, 552, 683, 796, 876
TaaI	ACNGT	1 cut(s)	825
TaiI	ACGT	2 cut(s)	281, 531
TaqI	TCGA	3 cut(s)	181, 241, 783
TasI	AATT	2 cut(s)	193, 224
TauI	GCSGC	2 cut(s)	473, 775
TfiI	GAWTC	2 cut(s)	135, 296
Tru1I	TTAA	1 cut(s)	366
Tru9I	TTAA	1 cut(s)	366
TscAI	CASTG	2 cut(s)	44, 828
TseI	GCWGC	1 cut(s)	607
TspDTI	ATGAA	1 cut(s)	365
TspRI	CASTG	2 cut(s)	44, 828
VpaK11BI	GGWCC	2 cut(s)	99, 702
XapI	RAATTY	1 cut(s)	224
XcmI	CCANNNNNNNNNTGG	1 cut(s)	801
XspI	CTAG	3 cut(s)	122, 218, 335

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.