Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0003168

Physical Location & Seq

Genomic Coordinates Reverse (-)

51618946 .. 51619557

Gene Structure 612 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000009364

Sequence Viewer

CDS Protein Promoter (2k)

Length: 612 bp

ATGTTGATCTCCGGCGACAAAAACCACCGCCACCCTCACATCGTAGTCTACCCCTACCCTGCACAAGGCCACATGCTAGCACTCCTCGGCCTAACCAACCAACTAGCCCTCCGCGCCCTCACCATAATAATCGTTATCACCCCCAGAAACCTCCCAATCCTCACACCTCTCCTCTCAACCCACCCCTCAATCCAAACCCTCGTCCTCCCATTTCCTTTACACCCCAAAATACCCCCCGGCGTCGAAAACTTCAAGGACATCGGCAACCACAGCAACCTCGCCATCATCAACGCCCTCGCCAACCTCCACGACCCGATCATCCAGTGGTTCAAGTCCCACCCTAACCCCCCTGTGGCTCTCATCTCAGATTTCTTTCTCGGCCACACTTTACGCCTCGCCGACCACCTCAAAATACCTAGAATAAGCTTCTCCTCGACCAGAGCTTTCTTGGCCTTGATTCTCGAGTACTGTTGGCGAAACCTGGATCTGGTCCATTCCTCGTCGGCGGTTATTGACTTTCCCTCTGTTCCTCGATCGCCGTCTTTGAAAAGGGTGCACTTGTTGTCGATTGTGTTGGCTCACAGAGGAACGGATCCGAGTTTGAGCTCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0008194 GO:0016740 GO:0016757 GO:0016758 GO:0035251 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046527 GO:0080043 GO:0080044

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UDPGT

Protein Analysis

204

Amino Acids

22.52

Weight (kDa)

9.91

Isoelectric Point (pI)

31.11

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003168)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G51210 AT5G03490
fragaria_vesca	FvH4_4g29060 FvH4_4g29061
malus_domestica	MD16G1054300.v1.1 MD16G1054500.v1.1 MD16G1054600.v1.1
prunus_persica	Prupe.1G295300_v2.0.a1
pyrus_communis	pycom16g04730 pycom16g04740 pycom16g04750
rosa_chinensis	RchiOBHm_Chr4g0437141 RchiOBHm_Chr4g0437161
rosa_laevigata	RLG00000006459 RLG00000006463 RLG00000006464 RLG00000009364
rosa_multiflora	Rmu_co8368091.1_g000001 Rmu_sc0000591.1_g000008 Rmu_sc0000591.1_g000012 Rmu_sc0017900.1_g000001 Rmu_sc0017900.1_g000006 Rmu_ssc0000006.1_g000001
rosa_roxburghii	Rroxscaffold_5G00378220 Rroxscaffold_5G00378300
rosa_rugosa	Rorug04G0298300 Rorug04G0298400.1
rosa_samantha	Rh4AG353300 Rh4BG362900 Rh4BG363000 Rh4BG363200 Rh4CG377100 Rh4CG377300 Rh4DG356800 Rh4DG357000
rosa_wichuraiana	Rw4G030950 Rw4G030960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	48
AccII	CGCG	1 cut(s)	114
AciI	CCGC	3 cut(s)	28, 112, 506
AclWI	GGATC	3 cut(s)	492, 587, 600
AcoI	YGGCCR	1 cut(s)	379
AcyI	GRCGYC	1 cut(s)	240
AfaI	GTAC	1 cut(s)	467
AfiI	CCNNNNNNNGG	3 cut(s)	65, 352, 487
AgsI	TTSAA	3 cut(s)	253, 331, 547
AjnI	CCWGG	1 cut(s)	480
AluBI	AGCT	3 cut(s)	426, 443, 606
AluI	AGCT	3 cut(s)	426, 443, 606
Alw21I	GWGCWC	2 cut(s)	558, 608
Alw44I	GTGCAC	1 cut(s)	554
AlwI	GGATC	3 cut(s)	492, 587, 600
Ama87I	CYCGRG	1 cut(s)	461
AoxI	GGCC	4 cut(s)	67, 88, 379, 450
ApaLI	GTGCAC	1 cut(s)	554
AspLEI	GCGC	1 cut(s)	116
AspS9I	GGNCC	1 cut(s)	490
AsuC2I	CCSGG	1 cut(s)	237
AsuHPI	GGTGA	2 cut(s)	112, 130
AsuNHI	GCTAGC	1 cut(s)	76
AvaI	CYCGRG	1 cut(s)	461
AvaII	GGWCC	1 cut(s)	490
BaeGI	GKGCMC	1 cut(s)	558
BamHI	GGATCC	1 cut(s)	592
BanII	GRGCYC	1 cut(s)	608
Bbv12I	GWGCWC	2 cut(s)	558, 608
BccI	CCATC	1 cut(s)	290
BceAI	ACGGC	1 cut(s)	523
BciT130I	CCWGG	1 cut(s)	482
BcnI	CCSGG	1 cut(s)	237
BfaI	CTAG	3 cut(s)	77, 104, 417
BmcAI	AGTACT	1 cut(s)	467
Bme1390I	CCNGG	2 cut(s)	237, 482
Bme18I	GGWCC	1 cut(s)	490
BmeT110I	CYCGRG	1 cut(s)	461
BmgT120I	GGNCC	1 cut(s)	490
BmiI	GGNNCC	1 cut(s)	594
BmrFI	CCNGG	2 cut(s)	237, 482
BmtI	GCTAGC	1 cut(s)	80
BpuMI	CCSGG	1 cut(s)	237
BsaHI	GRCGYC	1 cut(s)	240
BsaJI	CCNNGG	2 cut(s)	85, 235
BsaXI	ACNNNNNCTCC	2 cut(s)	93, 123
Bsc4I	CCNNNNNNNGG	3 cut(s)	65, 352, 487
Bse1I	ACTGG	1 cut(s)	322
BseBI	CCWGG	1 cut(s)	482
BseDI	CCNNGG	2 cut(s)	85, 235
BseGI	GGATG	1 cut(s)	318
BseLI	CCNNNNNNNGG	3 cut(s)	65, 352, 487
BseMII	CTCAG	1 cut(s)	378
BseNI	ACTGG	1 cut(s)	322
BseRI	GAGGAG	3 cut(s)	74, 161, 421
BseSI	GKGCMC	1 cut(s)	558
BsgI	GTGCAG	1 cut(s)	45
Bsh1236I	CGCG	1 cut(s)	114
Bsh1285I	CGRYCG	1 cut(s)	536
BshFI	GGCC	4 cut(s)	69, 90, 381, 452
BsiEI	CGRYCG	1 cut(s)	536
BsiHKAI	GWGCWC	2 cut(s)	558, 608
BsiHKCI	CYCGRG	1 cut(s)	461
BsiSI	CCGG	2 cut(s)	12, 237
BslFI	GGGAC	1 cut(s)	319
BslI	CCNNNNNNNGG	3 cut(s)	65, 352, 487
BsmFI	GGGAC	1 cut(s)	319
BsnI	GGCC	4 cut(s)	69, 90, 381, 452
BsoBI	CYCGRG	1 cut(s)	461
Bsp1286I	GDGCHC	2 cut(s)	558, 608
Bsp143I	GATC	5 cut(s)	6, 315, 484, 533, 592
BspACI	CCGC	3 cut(s)	28, 112, 506
BspANI	GGCC	4 cut(s)	69, 90, 381, 452
BspCNI	CTCAG	1 cut(s)	377
BspFNI	CGCG	1 cut(s)	114
BspLI	GGNNCC	1 cut(s)	594
BspOI	GCTAGC	1 cut(s)	80
BspPI	GGATC	3 cut(s)	492, 587, 600
BsrI	ACTGG	1 cut(s)	322
BssECI	CCNNGG	2 cut(s)	85, 235
BssMI	GATC	5 cut(s)	6, 315, 484, 533, 592
BssNI	GRCGYC	1 cut(s)	240
Bst2UI	CCWGG	1 cut(s)	482
Bst4CI	ACNGT	1 cut(s)	470
BstACI	GRCGYC	1 cut(s)	240
BstC8I	GCNNGC	1 cut(s)	78
BstDEI	CTNAG	1 cut(s)	364
BstENI	CCTNNNNNAGG	1 cut(s)	63
BstF5I	GGATG	1 cut(s)	318
BstFNI	CGCG	1 cut(s)	114
BstHHI	GCGC	1 cut(s)	116
BstKTI	GATC	5 cut(s)	9, 318, 487, 536, 595
BstMBI	GATC	5 cut(s)	6, 315, 484, 533, 592
BstMCI	CGRYCG	1 cut(s)	536
BstMWI	GCNNNNNNNGC	3 cut(s)	113, 270, 449
BstNI	CCWGG	1 cut(s)	482
BstNSI	RCATGY	1 cut(s)	76
BstSCI	CCNGG	2 cut(s)	235, 480
BstSLI	GKGCMC	1 cut(s)	558
BstUI	CGCG	1 cut(s)	114
BstX2I	RGATCY	2 cut(s)	484, 592
BstYI	RGATCY	2 cut(s)	484, 592
BsuRI	GGCC	4 cut(s)	69, 90, 381, 452
BtsCI	GGATG	1 cut(s)	318
BtsIMutI	CAGTG	1 cut(s)	329
Cac8I	GCNNGC	1 cut(s)	78
CfoI	GCGC	1 cut(s)	116
Cfr13I	GGNCC	1 cut(s)	490
CseI	GACGC	1 cut(s)	229
Csp6I	GTAC	1 cut(s)	466
CviAII	CATG	1 cut(s)	73
CviQI	GTAC	1 cut(s)	466
DdeI	CTNAG	1 cut(s)	364
DpnI	GATC	5 cut(s)	8, 317, 486, 535, 594
DpnII	GATC	5 cut(s)	6, 315, 484, 533, 592
EaeI	YGGCCR	1 cut(s)	379
Ecl136II	GAGCTC	1 cut(s)	606
Eco24I	GRGCYC	1 cut(s)	608
Eco47I	GGWCC	1 cut(s)	490
Eco53kI	GAGCTC	1 cut(s)	606
Eco88I	CYCGRG	1 cut(s)	461
EcoICRI	GAGCTC	1 cut(s)	606
EcoNI	CCTNNNNNAGG	1 cut(s)	63
EcoRII	CCWGG	1 cut(s)	480
EcoT38I	GRGCYC	1 cut(s)	608
FaeI	CATG	1 cut(s)	76
FaiI	YATR	2 cut(s)	74, 125
FaqI	GGGAC	1 cut(s)	319
FatI	CATG	1 cut(s)	72
FblI	GTMKAC	1 cut(s)	48
FokI	GGATG	1 cut(s)	305
FriOI	GRGCYC	1 cut(s)	608
FspBI	CTAG	3 cut(s)	77, 104, 417
GlaI	GCGC	1 cut(s)	115
HaeIII	GGCC	4 cut(s)	69, 90, 381, 452
HapII	CCGG	2 cut(s)	12, 237
HgaI	GACGC	1 cut(s)	229
HhaI	GCGC	1 cut(s)	116
Hin1I	GRCGYC	1 cut(s)	240
Hin1II	CATG	1 cut(s)	76
Hin6I	GCGC	1 cut(s)	114
HinP1I	GCGC	1 cut(s)	114
HindIII	AAGCTT	1 cut(s)	424
HinfI	GANTC	1 cut(s)	457
HpaII	CCGG	2 cut(s)	12, 237
HphI	GGTGA	2 cut(s)	112, 130
Hpy166II	GTNNAC	2 cut(s)	49, 556
Hpy188I	TCNGA	2 cut(s)	367, 597
Hpy188III	TCNNGA	1 cut(s)	461
Hpy8I	GTNNAC	2 cut(s)	49, 556
Hpy99I	CGWCG	2 cut(s)	245, 505
HpyCH4III	ACNGT	1 cut(s)	470
HpyCH4V	TGCA	2 cut(s)	62, 556
HpyF10VI	GCNNNNNNNGC	3 cut(s)	113, 270, 449
HpyF3I	CTNAG	1 cut(s)	364
Hsp92I	GRCGYC	1 cut(s)	240
Hsp92II	CATG	1 cut(s)	76
HspAI	GCGC	1 cut(s)	114
Kzo9I	GATC	5 cut(s)	6, 315, 484, 533, 592
LmnI	GCTCC	1 cut(s)	611
MaeI	CTAG	3 cut(s)	77, 104, 417
MalI	GATC	5 cut(s)	8, 317, 486, 535, 594
MboI	GATC	5 cut(s)	6, 315, 484, 533, 592
MflI	RGATCY	2 cut(s)	484, 592
MhlI	GDGCHC	2 cut(s)	558, 608
MspI	CCGG	2 cut(s)	12, 237
MspR9I	CCNGG	2 cut(s)	237, 482
MvaI	CCWGG	1 cut(s)	482
MvnI	CGCG	1 cut(s)	114
MwoI	GCNNNNNNNGC	3 cut(s)	113, 270, 449
NciI	CCSGG	1 cut(s)	237
NdeII	GATC	5 cut(s)	6, 315, 484, 533, 592
NheI	GCTAGC	1 cut(s)	76
NlaIII	CATG	1 cut(s)	76
NlaIV	GGNNCC	1 cut(s)	594
NmeAIII	GCCGAG	2 cut(s)	66, 357
NspI	RCATGY	1 cut(s)	76
PaeR7I	CTCGAG	1 cut(s)	461
PfeI	GAWTC	1 cut(s)	457
Ple19I	CGATCG	1 cut(s)	536
Psp124BI	GAGCTC	1 cut(s)	608
Psp6I	CCWGG	1 cut(s)	480
PspGI	CCWGG	1 cut(s)	480
PspN4I	GGNNCC	1 cut(s)	594
PspPI	GGNCC	1 cut(s)	490
PsuI	RGATCY	2 cut(s)	484, 592
PvuI	CGATCG	1 cut(s)	536
RsaI	GTAC	1 cut(s)	467
RsaNI	GTAC	1 cut(s)	466
SacI	GAGCTC	1 cut(s)	608
Sau3AI	GATC	5 cut(s)	6, 315, 484, 533, 592
Sau96I	GGNCC	1 cut(s)	490
ScaI	AGTACT	1 cut(s)	467
ScrFI	CCNGG	2 cut(s)	237, 482
SduI	GDGCHC	2 cut(s)	558, 608
Sfr274I	CTCGAG	1 cut(s)	461
SinI	GGWCC	1 cut(s)	490
SlaI	CTCGAG	1 cut(s)	461
SmlI	CTYRAG	1 cut(s)	461
SmoI	CTYRAG	1 cut(s)	461
SsiI	CCGC	3 cut(s)	28, 112, 506
SspMI	CTAG	3 cut(s)	77, 104, 417
SstI	GAGCTC	1 cut(s)	608
StyD4I	CCNGG	2 cut(s)	235, 480
TaaI	ACNGT	1 cut(s)	470
TaqI	TCGA	5 cut(s)	243, 434, 462, 532, 566
TatI	WGTACW	1 cut(s)	465
TfiI	GAWTC	1 cut(s)	457
TscAI	CASTG	1 cut(s)	329
TspGWI	ACGGA	1 cut(s)	605
TspRI	CASTG	1 cut(s)	329
VneI	GTGCAC	1 cut(s)	554
VpaK11BI	GGWCC	1 cut(s)	490
XagI	CCTNNNNNAGG	1 cut(s)	63
XceI	RCATGY	1 cut(s)	76
XcmI	CCANNNNNNNNNTGG	1 cut(s)	445
XhoI	CTCGAG	1 cut(s)	461
XmiI	GTMKAC	1 cut(s)	48
XspI	CTAG	3 cut(s)	77, 104, 417
ZrmI	AGTACT	1 cut(s)	467

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.