Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0017900.1

Orthogroup ID

OG0003168

Physical Location & Seq

Genomic Coordinates Forward (+)

14757 .. 15315

Gene Structure 559 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0017900.1_g000006.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 450 bp

atggtttcaggtgtgttgatattggcttggcccatggaggctaaccagtttgtgaacgccaagctgttagtgaaggacatgggcgttgttgtacaagtgggtgagagtgctaatgtgatacccgacctggcccatttgggaaacatgatccatgagtcactaactgggaacaaacctgaaaaggtgagtgcaagggtgcttagagcaagtccacccgttgagcttgaccggtcaagactattcactgattttttgccttgtatttccactattgagcttgaccagtcagatactgttcacaaaatgtcacgactagtcaagtttttagtcaagaacttgtatctgactggtttggacaaggcatttggtgctgtgagaaatggtgggagctcttccaagcatttggatgagcttgtgaaagaattgggtcagcttaaagttgcgaagtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0008194 GO:0016740 GO:0016757 GO:0016758 GO:0035251 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046527 GO:0080043 GO:0080044

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UDPGT

Protein Analysis

149

Amino Acids

16.29

Weight (kDa)

8.74

Isoelectric Point (pI)

33.03

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003168)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G51210 AT5G03490
fragaria_vesca	FvH4_4g29060 FvH4_4g29061
malus_domestica	MD16G1054300.v1.1 MD16G1054500.v1.1 MD16G1054600.v1.1
prunus_persica	Prupe.1G295300_v2.0.a1
pyrus_communis	pycom16g04730 pycom16g04740 pycom16g04750
rosa_chinensis	RchiOBHm_Chr4g0437141 RchiOBHm_Chr4g0437161
rosa_laevigata	RLG00000006459 RLG00000006463 RLG00000006464 RLG00000009364
rosa_multiflora	Rmu_co8368091.1_g000001 Rmu_sc0000591.1_g000008 Rmu_sc0000591.1_g000012 Rmu_sc0017900.1_g000001 Rmu_sc0017900.1_g000006 Rmu_ssc0000006.1_g000001
rosa_roxburghii	Rroxscaffold_5G00378220 Rroxscaffold_5G00378300
rosa_rugosa	Rorug04G0298300 Rorug04G0298400.1
rosa_samantha	Rh4AG353300 Rh4BG362900 Rh4BG363000 Rh4BG363200 Rh4CG377100 Rh4CG377300 Rh4DG356800 Rh4DG357000
rosa_wichuraiana	Rw4G030950 Rw4G030960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	142
AfaI	GTAC	1 cut(s)	93
AgeI	ACCGGT	1 cut(s)	228
AhlI	ACTAGT	1 cut(s)	313
AjnI	CCWGG	1 cut(s)	126
AluBI	AGCT	6 cut(s)	64, 223, 277, 390, 412, 433
AluI	AGCT	6 cut(s)	64, 223, 277, 390, 412, 433
Alw21I	GWGCWC	1 cut(s)	392
AlwI	GGATC	1 cut(s)	142
AlwNI	CAGNNNCTG	1 cut(s)	293
AoxI	GGCC	2 cut(s)	29, 129
ArsI	GACNNNNNNTTYG	2 cut(s)	347, 379
AsiGI	ACCGGT	1 cut(s)	228
AspS9I	GGNCC	2 cut(s)	30, 130
AsuHPI	GGTGA	2 cut(s)	113, 196
BanII	GRGCYC	1 cut(s)	392
Bbv12I	GWGCWC	1 cut(s)	392
BciT130I	CCWGG	1 cut(s)	128
BcuI	ACTAGT	1 cut(s)	313
BfaI	CTAG	1 cut(s)	314
Bme1390I	CCNGG	1 cut(s)	128
BmgT120I	GGNCC	2 cut(s)	30, 130
BmrFI	CCNGG	1 cut(s)	128
BmrI	ACTGGG	1 cut(s)	174
BmuI	ACTGGG	1 cut(s)	174
BsaJI	CCNNGG	1 cut(s)	33
BsaWI	WCCGGW	1 cut(s)	228
Bse118I	RCCGGY	1 cut(s)	228
Bse1I	ACTGG	4 cut(s)	46, 169, 283, 352
BseBI	CCWGG	1 cut(s)	128
BseDI	CCNNGG	1 cut(s)	33
BseGI	GGATG	1 cut(s)	412
BseNI	ACTGG	4 cut(s)	46, 169, 283, 352
BshFI	GGCC	2 cut(s)	31, 131
BshTI	ACCGGT	1 cut(s)	228
BsiHKAI	GWGCWC	1 cut(s)	392
BsiSI	CCGG	1 cut(s)	229
BsnI	GGCC	2 cut(s)	31, 131
Bsp1286I	GDGCHC	1 cut(s)	392
Bsp1407I	TGTACA	1 cut(s)	91
Bsp143I	GATC	1 cut(s)	147
Bsp19I	CCATGG	1 cut(s)	33
BspANI	GGCC	2 cut(s)	31, 131
BspPI	GGATC	1 cut(s)	142
BspQI	GCTCTTC	1 cut(s)	397
BsrFI	RCCGGY	1 cut(s)	228
BsrGI	TGTACA	1 cut(s)	91
BsrI	ACTGG	4 cut(s)	46, 169, 283, 352
BssAI	RCCGGY	1 cut(s)	228
BssECI	CCNNGG	1 cut(s)	33
BssMI	GATC	1 cut(s)	147
BssT1I	CCWWGG	1 cut(s)	33
Bst2UI	CCWGG	1 cut(s)	128
Bst4CI	ACNGT	1 cut(s)	295
Bst6I	CTCTTC	1 cut(s)	397
BstAPI	GCANNNNNTGC	1 cut(s)	368
BstAUI	TGTACA	1 cut(s)	91
BstDEI	CTNAG	1 cut(s)	200
BstDSI	CCRYGG	1 cut(s)	33
BstF5I	GGATG	1 cut(s)	412
BstKTI	GATC	1 cut(s)	150
BstMBI	GATC	1 cut(s)	147
BstMWI	GCNNNNNNNGC	1 cut(s)	368
BstNI	CCWGG	1 cut(s)	128
BstSCI	CCNGG	1 cut(s)	126
BstXI	CCANNNNNNTGG	1 cut(s)	403
BsuRI	GGCC	2 cut(s)	31, 131
BtgI	CCRYGG	1 cut(s)	33
BtsCI	GGATG	1 cut(s)	412
BtsIMutI	CAGTG	1 cut(s)	243
CaiI	CAGNNNCTG	1 cut(s)	293
Cfr10I	RCCGGY	1 cut(s)	228
Cfr13I	GGNCC	2 cut(s)	30, 130
Csp6I	GTAC	1 cut(s)	92
CspAI	ACCGGT	1 cut(s)	228
CviAII	CATG	4 cut(s)	34, 79, 145, 152
CviQI	GTAC	1 cut(s)	92
DdeI	CTNAG	1 cut(s)	200
DpnI	GATC	1 cut(s)	149
DpnII	GATC	1 cut(s)	147
Eam1104I	CTCTTC	1 cut(s)	397
EarI	CTCTTC	1 cut(s)	397
Ecl136II	GAGCTC	1 cut(s)	390
Eco130I	CCWWGG	1 cut(s)	33
Eco24I	GRGCYC	1 cut(s)	392
Eco53kI	GAGCTC	1 cut(s)	390
EcoICRI	GAGCTC	1 cut(s)	390
EcoRII	CCWGG	1 cut(s)	126
EcoT14I	CCWWGG	1 cut(s)	33
EcoT38I	GRGCYC	1 cut(s)	392
ErhI	CCWWGG	1 cut(s)	33
FaeI	CATG	4 cut(s)	37, 82, 148, 155
FaiI	YATR	4 cut(s)	35, 80, 146, 153
FatI	CATG	4 cut(s)	33, 78, 144, 151
FokI	GGATG	1 cut(s)	419
FriOI	GRGCYC	1 cut(s)	392
FspBI	CTAG	1 cut(s)	314
HaeIII	GGCC	2 cut(s)	31, 131
HapII	CCGG	1 cut(s)	229
Hin1II	CATG	4 cut(s)	37, 82, 148, 155
HinfI	GANTC	1 cut(s)	155
HpaII	CCGG	1 cut(s)	229
HphI	GGTGA	2 cut(s)	113, 196
Hpy166II	GTNNAC	3 cut(s)	55, 212, 298
Hpy188I	TCNGA	2 cut(s)	289, 345
Hpy188III	TCNNGA	3 cut(s)	234, 309, 331
Hpy8I	GTNNAC	3 cut(s)	55, 212, 298
HpyAV	CCTTC	1 cut(s)	67
HpyCH4III	ACNGT	1 cut(s)	295
HpyCH4V	TGCA	1 cut(s)	191
HpyF10VI	GCNNNNNNNGC	1 cut(s)	368
HpyF3I	CTNAG	1 cut(s)	200
Hsp92II	CATG	4 cut(s)	37, 82, 148, 155
Kzo9I	GATC	1 cut(s)	147
LguI	GCTCTTC	1 cut(s)	397
LmnI	GCTCC	1 cut(s)	387
LpnPI	CCDG	8 cut(s)	59, 113, 140, 150, 189, 242, 296, 333
MaeI	CTAG	1 cut(s)	314
MaeIII	GTNAC	2 cut(s)	156, 306
MalI	GATC	1 cut(s)	149
MboI	GATC	1 cut(s)	147
MboII	GAAGA	1 cut(s)	384
MhlI	GDGCHC	1 cut(s)	392
MluCI	AATT	1 cut(s)	422
MlyI	GAGTC	1 cut(s)	164
MnlI	CCTC	1 cut(s)	31
MseI	TTAA	1 cut(s)	435
MslI	CAYNNNNRTG	1 cut(s)	405
MspI	CCGG	1 cut(s)	229
MspR9I	CCNGG	1 cut(s)	128
MvaI	CCWGG	1 cut(s)	128
MwoI	GCNNNNNNNGC	1 cut(s)	368
NcoI	CCATGG	1 cut(s)	33
NdeII	GATC	1 cut(s)	147
NlaIII	CATG	4 cut(s)	37, 82, 148, 155
NmuCI	GTSAC	2 cut(s)	156, 306
PciSI	GCTCTTC	1 cut(s)	397
PinAI	ACCGGT	1 cut(s)	228
PleI	GAGTC	1 cut(s)	163
PpsI	GAGTC	1 cut(s)	163
Psp124BI	GAGCTC	1 cut(s)	392
Psp6I	CCWGG	1 cut(s)	126
PspGI	CCWGG	1 cut(s)	126
PspPI	GGNCC	2 cut(s)	30, 130
PstNI	CAGNNNCTG	1 cut(s)	293
RsaI	GTAC	1 cut(s)	93
RsaNI	GTAC	1 cut(s)	92
RseI	CAYNNNNRTG	1 cut(s)	405
SacI	GAGCTC	1 cut(s)	392
SapI	GCTCTTC	1 cut(s)	397
SaqAI	TTAA	1 cut(s)	435
Sau3AI	GATC	1 cut(s)	147
Sau96I	GGNCC	2 cut(s)	30, 130
SchI	GAGTC	1 cut(s)	164
ScrFI	CCNGG	1 cut(s)	128
SduI	GDGCHC	1 cut(s)	392
SmiMI	CAYNNNNRTG	1 cut(s)	405
SpeI	ACTAGT	1 cut(s)	313
Sse9I	AATT	1 cut(s)	422
SspMI	CTAG	1 cut(s)	314
SstI	GAGCTC	1 cut(s)	392
StyD4I	CCNGG	1 cut(s)	126
StyI	CCWWGG	1 cut(s)	33
TaaI	ACNGT	1 cut(s)	295
TasI	AATT	1 cut(s)	422
TatI	WGTACW	1 cut(s)	91
Tru1I	TTAA	1 cut(s)	435
Tru9I	TTAA	1 cut(s)	435
TscAI	CASTG	1 cut(s)	250
TseFI	GTSAC	2 cut(s)	156, 306
Tsp45I	GTSAC	2 cut(s)	156, 306
TspRI	CASTG	1 cut(s)	250
XspI	CTAG	1 cut(s)	314

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.