Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr16

Orthogroup ID

OG0003168

Physical Location & Seq

Genomic Coordinates Forward (+)

3864897 .. 3865428

Gene Structure 532 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD16G1054600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 471 bp

ATGGAGGCCTTGGCTTCTGGGCTGGAACAGAGTGGGGCTCGGTTTGTGTGGGTTGTGAAAACGGGCTTGGTCGGGAAGGTGAATGATGGGTCCGGAGTCGTACCAGATGGGTTTGAGGAAAGGGTTGCTGGGAGGGGATTGCTGATAAAGGGCTGGGCGCCGCAGGTGATGATCCTCGGCCACCGGGCGGTTGGAGGGTTTCTCAGCCACTGGGCTGACCAGTTTGTAAATGCCAAACTATTGGTTGAGTACATGGGCGTGGGCGTGAAGGTGTGTGAGGGTGCCAATGGTGTACCTGACTCGGCCGAGCTGGGAAAGGCAATTGCTGAGTCAATGAGTGGGGAAGCACCTGAGAAGGTGAGAGCGAAGGAACTGAGGGACAAGGCAGTTGCGGCTGTGGGAGATGGTGGGAGCTCCTCAAAGGATTTGGACGAGCTTGTGAAAGAGTTGGGTCAAATTAAAGTGAGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0008194 GO:0016740 GO:0016757 GO:0016758 GO:0035251 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046527 GO:0080043 GO:0080044

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UDPGT

Protein Analysis

157

Amino Acids

16.32

Weight (kDa)

5.75

Isoelectric Point (pI)

21.3

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003168)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G51210 AT5G03490
fragaria_vesca	FvH4_4g29060 FvH4_4g29061
malus_domestica	MD16G1054300.v1.1 MD16G1054500.v1.1 MD16G1054600.v1.1
prunus_persica	Prupe.1G295300_v2.0.a1
pyrus_communis	pycom16g04730 pycom16g04740 pycom16g04750
rosa_chinensis	RchiOBHm_Chr4g0437141 RchiOBHm_Chr4g0437161
rosa_laevigata	RLG00000006459 RLG00000006463 RLG00000006464 RLG00000009364
rosa_multiflora	Rmu_co8368091.1_g000001 Rmu_sc0000591.1_g000008 Rmu_sc0000591.1_g000012 Rmu_sc0017900.1_g000001 Rmu_sc0017900.1_g000006 Rmu_ssc0000006.1_g000001
rosa_roxburghii	Rroxscaffold_5G00378220 Rroxscaffold_5G00378300
rosa_rugosa	Rorug04G0298300 Rorug04G0298400.1
rosa_samantha	Rh4AG353300 Rh4BG362900 Rh4BG363000 Rh4BG363200 Rh4CG377100 Rh4CG377300 Rh4DG356800 Rh4DG357000
rosa_wichuraiana	Rw4G030950 Rw4G030960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	154
Acc36I	ACCTGC	1 cut(s)	154
AccB1I	GGYRCC	2 cut(s)	157, 281
AccIII	TCCGGA	1 cut(s)	92
AciI	CCGC	3 cut(s)	161, 188, 392
AclWI	GGATC	1 cut(s)	166
AcoI	YGGCCR	2 cut(s)	178, 303
AcyI	GRCGYC	1 cut(s)	158
AfaI	GTAC	3 cut(s)	102, 251, 294
AfiI	CCNNNNNNNGG	1 cut(s)	187
AjuI	GAANNNNNNNTTGG	2 cut(s)	50, 82
AluBI	AGCT	3 cut(s)	310, 414, 436
AluI	AGCT	3 cut(s)	310, 414, 436
Alw21I	GWGCWC	1 cut(s)	416
AlwI	GGATC	1 cut(s)	166
AlwNI	CAGNNNCTG	1 cut(s)	210
Aor13HI	TCCGGA	1 cut(s)	92
AoxI	GGCC	3 cut(s)	6, 178, 303
AspLEI	GCGC	1 cut(s)	160
AspS9I	GGNCC	1 cut(s)	90
AsuC2I	CCSGG	1 cut(s)	185
AsuHPI	GGTGA	3 cut(s)	91, 178, 370
AvaII	GGWCC	1 cut(s)	90
BanI	GGYRCC	2 cut(s)	157, 281
BanII	GRGCYC	2 cut(s)	40, 416
Bbv12I	GWGCWC	1 cut(s)	416
BccI	CCATC	3 cut(s)	80, 101, 398
BcnI	CCSGG	1 cut(s)	185
BfoI	RGCGCY	1 cut(s)	161
BfuAI	ACCTGC	1 cut(s)	154
BisI	GCNGC	2 cut(s)	161, 393
BlsI	GCNGC	2 cut(s)	162, 394
Bme1390I	CCNGG	1 cut(s)	185
Bme18I	GGWCC	1 cut(s)	90
BmgT120I	GGNCC	1 cut(s)	90
BmiI	GGNNCC	3 cut(s)	91, 159, 283
BmrFI	CCNGG	1 cut(s)	185
BmrI	ACTGGG	1 cut(s)	220
BmuI	ACTGGG	1 cut(s)	220
BplI	GAGNNNNNCTC	4 cut(s)	22, 54, 186, 218
BpuMI	CCSGG	1 cut(s)	185
BsaHI	GRCGYC	1 cut(s)	158
BsaJI	CCNNGG	2 cut(s)	9, 175
BsaWI	WCCGGW	1 cut(s)	92
Bsc4I	CCNNNNNNNGG	1 cut(s)	187
Bse1I	ACTGG	2 cut(s)	215, 220
BseAI	TCCGGA	1 cut(s)	92
BseDI	CCNNGG	2 cut(s)	9, 175
BseLI	CCNNNNNNNGG	1 cut(s)	187
BseMII	CTCAG	4 cut(s)	217, 318, 342, 365
BseNI	ACTGG	2 cut(s)	215, 220
BseRI	GAGGAG	1 cut(s)	406
BseX3I	CGGCCG	1 cut(s)	303
BseYI	CCCAGC	3 cut(s)	128, 153, 310
Bsh1285I	CGRYCG	1 cut(s)	306
BshFI	GGCC	3 cut(s)	8, 180, 305
BshNI	GGYRCC	2 cut(s)	157, 281
BsiEI	CGRYCG	1 cut(s)	306
BsiHKAI	GWGCWC	1 cut(s)	416
BsiSI	CCGG	2 cut(s)	93, 184
BslFI	GGGAC	1 cut(s)	392
BslI	CCNNNNNNNGG	1 cut(s)	187
BsmFI	GGGAC	1 cut(s)	392
BsnI	GGCC	3 cut(s)	8, 180, 305
Bsp1286I	GDGCHC	2 cut(s)	40, 416
Bsp13I	TCCGGA	1 cut(s)	92
Bsp143I	GATC	1 cut(s)	171
BspACI	CCGC	3 cut(s)	161, 188, 392
BspANI	GGCC	3 cut(s)	8, 180, 305
BspCNI	CTCAG	4 cut(s)	216, 319, 343, 366
BspEI	TCCGGA	1 cut(s)	92
BspLI	GGNNCC	3 cut(s)	91, 159, 283
BspMI	ACCTGC	1 cut(s)	154
BspPI	GGATC	1 cut(s)	166
BspT107I	GGYRCC	2 cut(s)	157, 281
BsrI	ACTGG	2 cut(s)	215, 220
BssECI	CCNNGG	2 cut(s)	9, 175
BssMI	GATC	1 cut(s)	171
BssNI	GRCGYC	1 cut(s)	158
BssT1I	CCWWGG	1 cut(s)	9
BstACI	GRCGYC	1 cut(s)	158
BstDEI	CTNAG	4 cut(s)	203, 327, 351, 374
BstH2I	RGCGCY	1 cut(s)	161
BstHHI	GCGC	1 cut(s)	160
BstKTI	GATC	1 cut(s)	174
BstMBI	GATC	1 cut(s)	171
BstMCI	CGRYCG	1 cut(s)	306
BstMWI	GCNNNNNNNGC	1 cut(s)	392
BstSCI	CCNGG	1 cut(s)	183
BstXI	CCANNNNNNTGG	1 cut(s)	241
BstZI	CGGCCG	1 cut(s)	303
BsuRI	GGCC	3 cut(s)	8, 180, 305
BtsIMutI	CAGTG	1 cut(s)	208
BveI	ACCTGC	1 cut(s)	154
CaiI	CAGNNNCTG	1 cut(s)	210
CfoI	GCGC	1 cut(s)	160
Cfr13I	GGNCC	1 cut(s)	90
Csp6I	GTAC	3 cut(s)	101, 250, 293
CviAII	CATG	1 cut(s)	253
CviQI	GTAC	3 cut(s)	101, 250, 293
DdeI	CTNAG	4 cut(s)	203, 327, 351, 374
DinI	GGCGCC	1 cut(s)	159
DpnI	GATC	1 cut(s)	173
DpnII	GATC	1 cut(s)	171
EaeI	YGGCCR	2 cut(s)	178, 303
EagI	CGGCCG	1 cut(s)	303
Ecl136II	GAGCTC	1 cut(s)	414
EclXI	CGGCCG	1 cut(s)	303
Eco130I	CCWWGG	1 cut(s)	9
Eco147I	AGGCCT	1 cut(s)	8
Eco24I	GRGCYC	2 cut(s)	40, 416
Eco47I	GGWCC	1 cut(s)	90
Eco52I	CGGCCG	1 cut(s)	303
Eco53kI	GAGCTC	1 cut(s)	414
EcoICRI	GAGCTC	1 cut(s)	414
EcoT14I	CCWWGG	1 cut(s)	9
EcoT38I	GRGCYC	2 cut(s)	40, 416
EgeI	GGCGCC	1 cut(s)	159
EheI	GGCGCC	1 cut(s)	159
ErhI	CCWWGG	1 cut(s)	9
FaeI	CATG	1 cut(s)	256
FaiI	YATR	1 cut(s)	254
FaqI	GGGAC	1 cut(s)	392
FatI	CATG	1 cut(s)	252
Fnu4HI	GCNGC	2 cut(s)	161, 393
FriOI	GRGCYC	2 cut(s)	40, 416
Fsp4HI	GCNGC	2 cut(s)	161, 393
GlaI	GCGC	1 cut(s)	159
GluI	GCNGC	2 cut(s)	161, 393
GsaI	CCCAGC	3 cut(s)	132, 157, 314
HaeII	RGCGCY	1 cut(s)	161
HaeIII	GGCC	3 cut(s)	8, 180, 305
HapII	CCGG	2 cut(s)	93, 184
HhaI	GCGC	1 cut(s)	160
Hin1I	GRCGYC	1 cut(s)	158
Hin1II	CATG	1 cut(s)	256
Hin6I	GCGC	1 cut(s)	158
HinP1I	GCGC	1 cut(s)	158
HinfI	GANTC	3 cut(s)	96, 299, 329
HpaII	CCGG	2 cut(s)	93, 184
HphI	GGTGA	3 cut(s)	91, 178, 370
Hpy166II	GTNNAC	1 cut(s)	293
Hpy188III	TCNNGA	2 cut(s)	73, 93
Hpy8I	GTNNAC	1 cut(s)	293
HpyAV	CCTTC	4 cut(s)	70, 262, 349, 361
HpyF10VI	GCNNNNNNNGC	1 cut(s)	392
HpyF3I	CTNAG	4 cut(s)	203, 327, 351, 374
Hsp92I	GRCGYC	1 cut(s)	158
Hsp92II	CATG	1 cut(s)	256
HspAI	GCGC	1 cut(s)	158
KasI	GGCGCC	1 cut(s)	157
Kpn2I	TCCGGA	1 cut(s)	92
Kzo9I	GATC	1 cut(s)	171
LmnI	GCTCC	2 cut(s)	411, 419
MalI	GATC	1 cut(s)	173
MboI	GATC	1 cut(s)	171
MfeI	CAATTG	1 cut(s)	321
MhlI	GDGCHC	2 cut(s)	40, 416
MluCI	AATT	2 cut(s)	321, 456
Mly113I	GGCGCC	1 cut(s)	158
MlyI	GAGTC	3 cut(s)	105, 293, 338
MmeI	TCCRAC	1 cut(s)	172
MnlI	CCTC	8 cut(s)	109, 126, 185, 188, 271, 369, 427, 459
MroI	TCCGGA	1 cut(s)	92
MseI	TTAA	1 cut(s)	459
MslI	CAYNNNNRTG	1 cut(s)	257
MspI	CCGG	2 cut(s)	93, 184
MspR9I	CCNGG	1 cut(s)	185
MunI	CAATTG	1 cut(s)	321
MwoI	GCNNNNNNNGC	1 cut(s)	392
NarI	GGCGCC	1 cut(s)	158
NciI	CCSGG	1 cut(s)	185
NdeII	GATC	1 cut(s)	171
NlaIII	CATG	1 cut(s)	256
NlaIV	GGNNCC	3 cut(s)	91, 159, 283
NmeAIII	GCCGAG	3 cut(s)	156, 281, 331
PaqCI	CACCTGC	1 cut(s)	154
PceI	AGGCCT	1 cut(s)	8
PkrI	GCNGC	2 cut(s)	162, 394
PleI	GAGTC	3 cut(s)	104, 293, 337
PluTI	GGCGCC	1 cut(s)	161
PpsI	GAGTC	3 cut(s)	104, 293, 337
Psp124BI	GAGCTC	1 cut(s)	416
PspFI	CCCAGC	3 cut(s)	128, 153, 310
PspN4I	GGNNCC	3 cut(s)	91, 159, 283
PspPI	GGNCC	1 cut(s)	90
PstNI	CAGNNNCTG	1 cut(s)	210
RsaI	GTAC	3 cut(s)	102, 251, 294
RsaNI	GTAC	3 cut(s)	101, 250, 293
RseI	CAYNNNNRTG	1 cut(s)	257
SacI	GAGCTC	1 cut(s)	416
SaqAI	TTAA	1 cut(s)	459
SatI	GCNGC	2 cut(s)	161, 393
Sau3AI	GATC	1 cut(s)	171
Sau96I	GGNCC	1 cut(s)	90
SchI	GAGTC	3 cut(s)	105, 293, 338
ScrFI	CCNGG	1 cut(s)	185
SduI	GDGCHC	2 cut(s)	40, 416
SfoI	GGCGCC	1 cut(s)	159
SinI	GGWCC	1 cut(s)	90
SmiMI	CAYNNNNRTG	1 cut(s)	257
Sse9I	AATT	2 cut(s)	321, 456
SseBI	AGGCCT	1 cut(s)	8
SsiI	CCGC	3 cut(s)	161, 188, 392
SspDI	GGCGCC	1 cut(s)	157
SstI	GAGCTC	1 cut(s)	416
StuI	AGGCCT	1 cut(s)	8
StyD4I	CCNGG	1 cut(s)	183
StyI	CCWWGG	1 cut(s)	9
TasI	AATT	2 cut(s)	321, 456
TatI	WGTACW	1 cut(s)	249
TauI	GCSGC	2 cut(s)	163, 395
Tru1I	TTAA	1 cut(s)	459
Tru9I	TTAA	1 cut(s)	459
TscAI	CASTG	1 cut(s)	215
TspRI	CASTG	1 cut(s)	215
VpaK11BI	GGWCC	1 cut(s)	90
XcmI	CCANNNNNNNNNTGG	1 cut(s)	188

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.