Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0003168

Physical Location & Seq

Genomic Coordinates Reverse (-)

7433048 .. 7434387

Gene Structure 1340 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000006459

Sequence Viewer

CDS Protein Promoter (2k)

Length: 630 bp

ATGTCGATCTCGGCCAACGATAACAGCCATTCTCAGGGAACTGGATCTCACATCTTGGTCTTCCCTTACCCTGCACAAGGACACATGCTACCGCTCCTCTACCTAACCCACCACCTAGCCCTCCGCCTCACTATAACTTTCGTGGTCACACCCAAGAACCTCCCAACCCTAACACCACTCCTCTCAAACCACCCCTCCATCCAAACCCTAGTCCTCCCATTTCCCTCACACCCCAAAATACCCCTCGGCGTCGAAAACGTCAAGTACATCAGCAACCACGGCAACATGTACGACTGTTTTGGGAATAGGTTGTTAAATTGGCAACCAATAGAGGCACTGGCTTACGGGCTCGAAAAGAGTGGAGTTCGATTTGTGTGGCTTGTGAAAGAAGGCTTTGCCCAACAAATTGATGCTCGAAGCGATGGTTTCGGGTGTGTTGATATTGGCCTGGCCCATGGAGCTGACCAGTTTGTGAACGCCAAGCAGTTGGTAAAGGACATGGGCGTCTCTGTACAAGTAGGTGAGGGTGCTAATGGGATACCCGACCCGGCCCATTTGGGAAAGATGATCCATGAGTCACTGACTGGGAACATACCTGAAAAGGTCAGTGCAAGCGTGCTTACTGCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0008194 GO:0016740 GO:0016757 GO:0016758 GO:0035251 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046527 GO:0080043 GO:0080044

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UDPGT

Protein Analysis

210

Amino Acids

22.6

Weight (kDa)

6.58

Isoelectric Point (pI)

30.21

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003168)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G51210 AT5G03490
fragaria_vesca	FvH4_4g29060 FvH4_4g29061
malus_domestica	MD16G1054300.v1.1 MD16G1054500.v1.1 MD16G1054600.v1.1
prunus_persica	Prupe.1G295300_v2.0.a1
pyrus_communis	pycom16g04730 pycom16g04740 pycom16g04750
rosa_chinensis	RchiOBHm_Chr4g0437141 RchiOBHm_Chr4g0437161
rosa_laevigata	RLG00000006459 RLG00000006463 RLG00000006464 RLG00000009364
rosa_multiflora	Rmu_co8368091.1_g000001 Rmu_sc0000591.1_g000008 Rmu_sc0000591.1_g000012 Rmu_sc0017900.1_g000001 Rmu_sc0017900.1_g000006 Rmu_ssc0000006.1_g000001
rosa_roxburghii	Rroxscaffold_5G00378220 Rroxscaffold_5G00378300
rosa_rugosa	Rorug04G0298300 Rorug04G0298400.1
rosa_samantha	Rh4AG353300 Rh4BG362900 Rh4BG363000 Rh4BG363200 Rh4CG377100 Rh4CG377300 Rh4DG356800 Rh4DG357000
rosa_wichuraiana	Rw4G030950 Rw4G030960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	503
AccBSI	CCGCTC	1 cut(s)	94
AciI	CCGC	2 cut(s)	92, 124
AclWI	GGATC	2 cut(s)	52, 562
AcoI	YGGCCR	1 cut(s)	12
AcyI	GRCGYC	2 cut(s)	249, 504
AfaI	GTAC	3 cut(s)	266, 290, 513
AfiI	CCNNNNNNNGG	2 cut(s)	34, 77
AflIII	ACRYGT	1 cut(s)	285
AjnI	CCWGG	1 cut(s)	447
AluBI	AGCT	1 cut(s)	461
AluI	AGCT	1 cut(s)	461
Alw26I	GTCTC	1 cut(s)	511
AlwI	GGATC	2 cut(s)	52, 562
AoxI	GGCC	4 cut(s)	12, 445, 450, 549
AspS9I	GGNCC	2 cut(s)	451, 550
AsuC2I	CCSGG	1 cut(s)	548
AsuHPI	GGTGA	1 cut(s)	533
BanII	GRGCYC	1 cut(s)	351
BbsI	GAAGAC	1 cut(s)	52
BccI	CCATC	2 cut(s)	206, 416
BceAI	ACGGC	1 cut(s)	295
BciT130I	CCWGG	1 cut(s)	449
BciVI	GTATCC	1 cut(s)	531
BcnI	CCSGG	1 cut(s)	548
BcoDI	GTCTC	1 cut(s)	511
BfaI	CTAG	2 cut(s)	116, 209
BfuI	GTATCC	1 cut(s)	531
Bme1390I	CCNGG	2 cut(s)	449, 548
BmgT120I	GGNCC	2 cut(s)	451, 550
BmrFI	CCNGG	2 cut(s)	449, 548
BmrI	ACTGGG	1 cut(s)	594
BmsI	GCATC	1 cut(s)	400
BmuI	ACTGGG	1 cut(s)	594
BpiI	GAAGAC	1 cut(s)	52
BpuMI	CCSGG	1 cut(s)	548
BsaHI	GRCGYC	2 cut(s)	249, 504
BsaJI	CCNNGG	3 cut(s)	244, 277, 454
BsaXI	ACNNNNNCTCC	2 cut(s)	179, 209
Bsc4I	CCNNNNNNNGG	2 cut(s)	34, 77
Bse1I	ACTGG	4 cut(s)	46, 342, 466, 589
BseBI	CCWGG	1 cut(s)	449
BseDI	CCNNGG	3 cut(s)	244, 277, 454
BseGI	GGATG	1 cut(s)	198
BseLI	CCNNNNNNNGG	2 cut(s)	34, 77
BseMII	CTCAG	1 cut(s)	47
BseNI	ACTGG	4 cut(s)	46, 342, 466, 589
BseRI	GAGGAG	2 cut(s)	86, 170
BsgI	GTGCAG	1 cut(s)	57
BshFI	GGCC	4 cut(s)	14, 447, 452, 551
BsiSI	CCGG	1 cut(s)	548
BslI	CCNNNNNNNGG	2 cut(s)	34, 77
BsmAI	GTCTC	1 cut(s)	511
BsmBI	CGTCTC	1 cut(s)	511
BsnI	GGCC	4 cut(s)	14, 447, 452, 551
Bsp1286I	GDGCHC	1 cut(s)	351
Bsp1407I	TGTACA	1 cut(s)	511
Bsp143I	GATC	3 cut(s)	6, 44, 567
Bsp19I	CCATGG	1 cut(s)	454
BspACI	CCGC	2 cut(s)	92, 124
BspANI	GGCC	4 cut(s)	14, 447, 452, 551
BspCNI	CTCAG	1 cut(s)	46
BspPI	GGATC	2 cut(s)	52, 562
BsrBI	CCGCTC	1 cut(s)	94
BsrGI	TGTACA	1 cut(s)	511
BsrI	ACTGG	4 cut(s)	46, 342, 466, 589
BssECI	CCNNGG	3 cut(s)	244, 277, 454
BssMI	GATC	3 cut(s)	6, 44, 567
BssNI	GRCGYC	2 cut(s)	249, 504
BssT1I	CCWWGG	1 cut(s)	454
Bst2UI	CCWGG	1 cut(s)	449
Bst4CI	ACNGT	1 cut(s)	296
BstACI	GRCGYC	2 cut(s)	249, 504
BstAUI	TGTACA	1 cut(s)	511
BstC8I	GCNNGC	2 cut(s)	613, 617
BstDEI	CTNAG	2 cut(s)	33, 627
BstDSI	CCRYGG	2 cut(s)	277, 454
BstENI	CCTNNNNNAGG	1 cut(s)	75
BstF5I	GGATG	1 cut(s)	198
BstKTI	GATC	3 cut(s)	9, 47, 570
BstMAI	GTCTC	1 cut(s)	511
BstMBI	GATC	3 cut(s)	6, 44, 567
BstMWI	GCNNNNNNNGC	2 cut(s)	279, 458
BstNI	CCWGG	1 cut(s)	449
BstNSI	RCATGY	2 cut(s)	88, 289
BstSCI	CCNGG	2 cut(s)	447, 546
BstV2I	GAAGAC	1 cut(s)	52
BstX2I	RGATCY	1 cut(s)	44
BstXI	CCANNNNNNTGG	1 cut(s)	487
BstYI	RGATCY	1 cut(s)	44
BsuI	GTATCC	1 cut(s)	531
BsuRI	GGCC	4 cut(s)	14, 447, 452, 551
BtgI	CCRYGG	2 cut(s)	277, 454
BtgZI	GCGATG	1 cut(s)	435
BtsCI	GGATG	1 cut(s)	198
BtsIMutI	CAGTG	3 cut(s)	335, 578, 613
Cac8I	GCNNGC	2 cut(s)	613, 617
Cfr13I	GGNCC	2 cut(s)	451, 550
CseI	GACGC	2 cut(s)	238, 493
Csp6I	GTAC	3 cut(s)	265, 289, 512
CviAII	CATG	5 cut(s)	85, 286, 455, 499, 572
CviQI	GTAC	3 cut(s)	265, 289, 512
DdeI	CTNAG	2 cut(s)	33, 627
DpnI	GATC	3 cut(s)	8, 46, 569
DpnII	GATC	3 cut(s)	6, 44, 567
DrdI	GACNNNNNNGTC	1 cut(s)	503
DseDI	GACNNNNNNGTC	1 cut(s)	503
EaeI	YGGCCR	1 cut(s)	12
EciI	GGCGGA	1 cut(s)	113
Eco130I	CCWWGG	1 cut(s)	454
Eco24I	GRGCYC	1 cut(s)	351
EcoNI	CCTNNNNNAGG	1 cut(s)	75
EcoRII	CCWGG	1 cut(s)	447
EcoT14I	CCWWGG	1 cut(s)	454
EcoT38I	GRGCYC	1 cut(s)	351
ErhI	CCWWGG	1 cut(s)	454
Esp3I	CGTCTC	1 cut(s)	511
FaeI	CATG	5 cut(s)	88, 289, 458, 502, 575
FaiI	YATR	7 cut(s)	86, 134, 287, 456, 500, 573, 593
FatI	CATG	5 cut(s)	84, 285, 454, 498, 571
FokI	GGATG	1 cut(s)	185
FriOI	GRGCYC	1 cut(s)	351
FspBI	CTAG	2 cut(s)	116, 209
HaeIII	GGCC	4 cut(s)	14, 447, 452, 551
HapII	CCGG	1 cut(s)	548
HgaI	GACGC	2 cut(s)	238, 493
Hin1I	GRCGYC	2 cut(s)	249, 504
Hin1II	CATG	5 cut(s)	88, 289, 458, 502, 575
HinfI	GANTC	1 cut(s)	575
HpaII	CCGG	1 cut(s)	548
HphI	GGTGA	1 cut(s)	533
Hpy166II	GTNNAC	1 cut(s)	475
Hpy8I	GTNNAC	1 cut(s)	475
Hpy99I	CGWCG	1 cut(s)	254
HpyAV	CCTTC	1 cut(s)	383
HpyCH4III	ACNGT	1 cut(s)	296
HpyCH4IV	ACGT	1 cut(s)	258
HpyCH4V	TGCA	2 cut(s)	74, 611
HpyF10VI	GCNNNNNNNGC	2 cut(s)	279, 458
HpyF3I	CTNAG	2 cut(s)	33, 627
HpySE526I	ACGT	1 cut(s)	258
Hsp92I	GRCGYC	2 cut(s)	249, 504
Hsp92II	CATG	5 cut(s)	88, 289, 458, 502, 575
Kzo9I	GATC	3 cut(s)	6, 44, 567
LmnI	GCTCC	2 cut(s)	99, 458
LweI	GCATC	1 cut(s)	400
MaeI	CTAG	2 cut(s)	116, 209
MaeII	ACGT	1 cut(s)	258
MaeIII	GTNAC	2 cut(s)	145, 576
MalI	GATC	3 cut(s)	8, 46, 569
MbiI	CCGCTC	1 cut(s)	94
MboI	GATC	3 cut(s)	6, 44, 567
MboII	GAAGA	1 cut(s)	52
MflI	RGATCY	1 cut(s)	44
MhlI	GDGCHC	1 cut(s)	351
MluCI	AATT	2 cut(s)	316, 405
MlyI	GAGTC	1 cut(s)	584
MseI	TTAA	1 cut(s)	314
MspI	CCGG	1 cut(s)	548
MspR9I	CCNGG	2 cut(s)	449, 548
MvaI	CCWGG	1 cut(s)	449
MwoI	GCNNNNNNNGC	2 cut(s)	279, 458
NciI	CCSGG	1 cut(s)	548
NcoI	CCATGG	1 cut(s)	454
NdeII	GATC	3 cut(s)	6, 44, 567
NlaIII	CATG	5 cut(s)	88, 289, 458, 502, 575
NmeAIII	GCCGAG	1 cut(s)	225
NmuCI	GTSAC	2 cut(s)	145, 576
NspI	RCATGY	2 cut(s)	88, 289
PciI	ACATGT	1 cut(s)	285
PleI	GAGTC	1 cut(s)	583
PpsI	GAGTC	1 cut(s)	583
PscI	ACATGT	1 cut(s)	285
Psp6I	CCWGG	1 cut(s)	447
PspGI	CCWGG	1 cut(s)	447
PspPI	GGNCC	2 cut(s)	451, 550
PsuI	RGATCY	1 cut(s)	44
RsaI	GTAC	3 cut(s)	266, 290, 513
RsaNI	GTAC	3 cut(s)	265, 289, 512
SaqAI	TTAA	1 cut(s)	314
Sau3AI	GATC	3 cut(s)	6, 44, 567
Sau96I	GGNCC	2 cut(s)	451, 550
SchI	GAGTC	1 cut(s)	584
ScrFI	CCNGG	2 cut(s)	449, 548
SduI	GDGCHC	1 cut(s)	351
SetI	ASST	9 cut(s)	105, 117, 162, 261, 311, 463, 523, 598, 606
SfaNI	GCATC	1 cut(s)	400
Sse9I	AATT	2 cut(s)	316, 405
SsiI	CCGC	2 cut(s)	92, 124
SspMI	CTAG	2 cut(s)	116, 209
StyD4I	CCNGG	2 cut(s)	447, 546
StyI	CCWWGG	1 cut(s)	454
TaaI	ACNGT	1 cut(s)	296
TaiI	ACGT	1 cut(s)	261
TaqI	TCGA	5 cut(s)	5, 252, 351, 367, 415
TasI	AATT	2 cut(s)	316, 405
TatI	WGTACW	2 cut(s)	264, 511
Tru1I	TTAA	1 cut(s)	314
Tru9I	TTAA	1 cut(s)	314
TscAI	CASTG	3 cut(s)	342, 585, 613
TseFI	GTSAC	2 cut(s)	145, 576
Tsp45I	GTSAC	2 cut(s)	145, 576
TspRI	CASTG	3 cut(s)	342, 585, 613
XagI	CCTNNNNNAGG	1 cut(s)	75
XceI	RCATGY	2 cut(s)	88, 289
XspI	CTAG	2 cut(s)	116, 209

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.