Rh4AG353200

root meristem growth factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4A
OG0017656
Physical Location & Seq
Forward (+)
66181248 .. 66181692
445 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4AG353200.1

Sequence Viewer

Length: 354 bp
ATGATGTACGTACGTCAAGAGGGGAATGCTGCTGTGACAAGAATTCAAGCTGTTTCGACCGTAAATGGAGATCATATTCAAATGGTTAGTCCTCCTGATATTGCTACCAAGGAGAACAGGCTAGGAGGAAGGAAACTGGCGGTTCAGAAAGTTAAAGTGGTGAATGGTGCGACTGCTGTAAGGAGCTCAAACCAGCTTGAAGGGAACTGTGGTGGTGATCAAGTGAAGCAGGGTAGTCATGTAGAGTGTAACCAACAAAGTGGTACTGGATTTGAGGGAGTTGATGAGTCTGGTTTTGTCGCTTTTAATGAGGATTACCATGCTCCAAGGCACCACCCGCCTAAGAACAACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

117

Amino Acids

12.6

Weight (kDa)

6.96

Isoelectric Point (pI)

37.52

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0017656)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g29040
malus_domestica MD13G1055500.v1.1
prunus_persica Prupe.1G295400_v2.0.a1
rosa_laevigata RLG00000006465
rosa_multiflora Rmu_ssc0000006.1_g000002
rosa_roxburghii Rroxscaffold_5G00378210
rosa_rugosa Rorug04G0298300
rosa_samantha Rh4AG353200 Rh4BG362800 Rh4CG377000 Rh4DG356700
rosa_wichuraiana Rw4G030940

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 330
AciI CCGC 2 cut(s) 140, 338
AcsI RAATTY 1 cut(s) 42
AfaI GTAC 3 cut(s) 8, 12, 265
AgsI TTSAA 3 cut(s) 47, 80, 200
AluBI AGCT 3 cut(s) 50, 186, 196
AluI AGCT 3 cut(s) 50, 186, 196
Alw21I GWGCWC 1 cut(s) 188
ApeKI GCWGC 1 cut(s) 29
ApoI RAATTY 1 cut(s) 42
ArsI GACNNNNNNTTYG 2 cut(s) 73, 105
AsuHPI GGTGA 2 cut(s) 172, 227
BanI GGYRCC 1 cut(s) 330
BanII GRGCYC 1 cut(s) 188
Bbv12I GWGCWC 1 cut(s) 188
BbvI GCAGC 1 cut(s) 16
BclI TGATCA 1 cut(s) 217
BfaI CTAG 1 cut(s) 122
BisI GCNGC 1 cut(s) 30
BlsI GCNGC 1 cut(s) 31
BmiI GGNNCC 1 cut(s) 332
BsaAI YACGTR 1 cut(s) 10
BsaJI CCNNGG 2 cut(s) 108, 326
Bse1I ACTGG 2 cut(s) 141, 271
BseDI CCNNGG 2 cut(s) 108, 326
BseNI ACTGG 2 cut(s) 141, 271
BseXI GCAGC 1 cut(s) 16
Bsh1285I CGRYCG 1 cut(s) 60
BshNI GGYRCC 1 cut(s) 330
BsiEI CGRYCG 1 cut(s) 60
BsiHKAI GWGCWC 1 cut(s) 188
BsiWI CGTACG 1 cut(s) 10
BsmI GAATGC 1 cut(s) 31
Bsp1286I GDGCHC 1 cut(s) 188
Bsp143I GATC 2 cut(s) 70, 217
BspACI CCGC 2 cut(s) 140, 338
BspLI GGNNCC 1 cut(s) 332
BspT107I GGYRCC 1 cut(s) 330
BsrI ACTGG 2 cut(s) 141, 271
BssECI CCNNGG 2 cut(s) 108, 326
BssMI GATC 2 cut(s) 70, 217
BssT1I CCWWGG 2 cut(s) 108, 326
Bst4CI ACNGT 2 cut(s) 61, 209
BstBAI YACGTR 1 cut(s) 10
BstDEI CTNAG 1 cut(s) 342
BstKTI GATC 2 cut(s) 73, 220
BstMBI GATC 2 cut(s) 70, 217
BstMCI CGRYCG 1 cut(s) 60
BstMWI GCNNNNNNNGC 1 cut(s) 337
BstSNI TACGTA 1 cut(s) 10
BstV1I GCAGC 1 cut(s) 16
BstXI CCANNNNNNTGG 1 cut(s) 260
Csp6I GTAC 3 cut(s) 7, 11, 264
CviAII CATG 2 cut(s) 239, 320
CviJI RGCY 4 cut(s) 50, 121, 186, 196
CviKI_1 RGCY 4 cut(s) 50, 121, 186, 196
CviQI GTAC 3 cut(s) 7, 11, 264
DdeI CTNAG 1 cut(s) 342
DpnI GATC 2 cut(s) 72, 219
DpnII GATC 2 cut(s) 70, 217
Ecl136II GAGCTC 1 cut(s) 186
Eco105I TACGTA 1 cut(s) 10
Eco130I CCWWGG 2 cut(s) 108, 326
Eco24I GRGCYC 1 cut(s) 188
Eco53kI GAGCTC 1 cut(s) 186
EcoICRI GAGCTC 1 cut(s) 186
EcoRI GAATTC 1 cut(s) 42
EcoT14I CCWWGG 2 cut(s) 108, 326
EcoT38I GRGCYC 1 cut(s) 188
ErhI CCWWGG 2 cut(s) 108, 326
FaeI CATG 2 cut(s) 242, 323
FaiI YATR 3 cut(s) 75, 240, 321
FatI CATG 2 cut(s) 238, 319
FauI CCCGC 1 cut(s) 345
FbaI TGATCA 1 cut(s) 217
Fnu4HI GCNGC 1 cut(s) 30
FriOI GRGCYC 1 cut(s) 188
Fsp4HI GCNGC 1 cut(s) 30
FspBI CTAG 1 cut(s) 122
GluI GCNGC 1 cut(s) 30
Hin1II CATG 2 cut(s) 242, 323
HinfI GANTC 1 cut(s) 287
HphI GGTGA 2 cut(s) 172, 227
Hpy188I TCNGA 1 cut(s) 147
Hpy188III TCNNGA 2 cut(s) 17, 95
HpyAV CCTTC 2 cut(s) 123, 194
HpyCH4III ACNGT 2 cut(s) 61, 209
HpyCH4IV ACGT 2 cut(s) 9, 13
HpyF10VI GCNNNNNNNGC 1 cut(s) 337
HpyF3I CTNAG 1 cut(s) 342
HpySE526I ACGT 2 cut(s) 9, 13
Hsp92II CATG 2 cut(s) 242, 323
Ksp22I TGATCA 1 cut(s) 217
Kzo9I GATC 2 cut(s) 70, 217
LmnI GCTCC 2 cut(s) 183, 328
LpnPI CCDG 7 cut(s) 103, 108, 122, 206, 215, 252, 276
Lsp1109I GCAGC 1 cut(s) 16
MaeI CTAG 1 cut(s) 122
MaeII ACGT 2 cut(s) 9, 13
MaeIII GTNAC 2 cut(s) 34, 248
MalI GATC 2 cut(s) 72, 219
MboI GATC 2 cut(s) 70, 217
MhlI GDGCHC 1 cut(s) 188
MluCI AATT 1 cut(s) 42
MlyI GAGTC 1 cut(s) 296
MnlI CCTC 5 cut(s) 13, 102, 119, 268, 304
MseI TTAA 2 cut(s) 153, 306
Mva1269I GAATGC 1 cut(s) 31
MwoI GCNNNNNNNGC 1 cut(s) 337
NdeII GATC 2 cut(s) 70, 217
NlaIII CATG 2 cut(s) 242, 323
NlaIV GGNNCC 1 cut(s) 332
NmuCI GTSAC 1 cut(s) 34
PctI GAATGC 1 cut(s) 31
Pfl23II CGTACG 1 cut(s) 10
PkrI GCNGC 1 cut(s) 31
PleI GAGTC 1 cut(s) 295
PpsI GAGTC 1 cut(s) 295
Ppu21I YACGTR 1 cut(s) 10
Psp124BI GAGCTC 1 cut(s) 188
PspLI CGTACG 1 cut(s) 10
PspN4I GGNNCC 1 cut(s) 332
RsaI GTAC 3 cut(s) 8, 12, 265
RsaNI GTAC 3 cut(s) 7, 11, 264
SacI GAGCTC 1 cut(s) 188
SaqAI TTAA 2 cut(s) 153, 306
SatI GCNGC 1 cut(s) 30
Sau3AI GATC 2 cut(s) 70, 217
SchI GAGTC 1 cut(s) 296
SduI GDGCHC 1 cut(s) 188
SetI ASST 5 cut(s) 12, 16, 52, 188, 198
SnaBI TACGTA 1 cut(s) 10
Sse9I AATT 1 cut(s) 42
SsiI CCGC 2 cut(s) 140, 338
SspMI CTAG 1 cut(s) 122
SstI GAGCTC 1 cut(s) 188
StyI CCWWGG 2 cut(s) 108, 326
TaaI ACNGT 2 cut(s) 61, 209
TaiI ACGT 2 cut(s) 12, 16
TaqI TCGA 1 cut(s) 56
TasI AATT 1 cut(s) 42
Tru1I TTAA 2 cut(s) 153, 306
Tru9I TTAA 2 cut(s) 153, 306
TseFI GTSAC 1 cut(s) 34
TseI GCWGC 1 cut(s) 29
Tsp45I GTSAC 1 cut(s) 34
XapI RAATTY 1 cut(s) 42
XspI CTAG 1 cut(s) 122
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.