Prupe.1G312500_v2.0.a1

VQ motif

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0016317
Physical Location & Seq
Forward (+)
30310330 .. 30311534
1205 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G312500.1

Sequence Viewer

Length: 813 bp
ATGAACCCTGCAAAGCTCCAGCTGGATGAGGATCGTCAACATTCAGTTAGTAGAGATCAGATGATGATGATGAATGGCAACCGCCCCTCCCCATTGAAGATCAACAAGGCTTCCTATCTCATTCAAAAACCTCCCAACAATAATAATTCCTCTTCCCGCATGGCCAATCAACAGCATCCCCATGAACACCAACAACACCACCAGCAACAGCGGCAGCCGGTGATCATTTACACCCAATCTCCCAAGATCATCCACACGCAGGCACGTGATTTCATGGCTTTGGTCCAAAAGCTCACCGGCCTCGACCAACCCCAACAACCTGAATCTACTACTACTACTGATGATCATGTTCATGTAAAGCTGGACGCTTCGTCGTTGTCGCAGGGGCGAAGAAATCAAGATGACCAGATCATCGACATTAACAACATGAATAGTACTGCAAGTCAGTCTATAATTAGCAGCTGCAGCCACGATGACAATGATCAGTCGTCTTCGGGTCTCACGGATGAGAATTGTGATCAAAATAATAACAAGAATGTTGATGTTGTTCATCATCAAGGAAACAAAGGCAGCTTATCGTCGTCTTGTGGATATTATCCTCCCAATGCCATGTTCAGCCACCCAAGCCAGCCCTATTTTGCAGACATCCCTCTGTTCACGCCAACTTCGACTTCTTCGACCGATTTCTTCTGCTCCCCTCGGCCTCTTTACAGATTCTCAGATTCCTCGTCGCATGCGTCTCCCAATGTTAACGTGGGTGGTTCCATTTCTCCTTCCATGTTCAAGTTCATCAAGGGACTCACAGAGTATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
VQ

Protein Analysis

271

Amino Acids

30.2

Weight (kDa)

6.37

Isoelectric Point (pI)

54.51

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016317)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g27220
malus_domestica MD16G1041600.v1.1
prunus_persica Prupe.1G312500_v2.0.a1
pyrus_communis pycom13g03480 pycom16g03600
rosa_chinensis RchiOBHm_Chr4g0435011
rosa_laevigata RLG00000006629
rosa_multiflora Rmu_sc0000400.1_g000033
rosa_roxburghii Rroxscaffold_5G00376200
rosa_rugosa Rorug04G0281600
rosa_samantha Rh4AG337100 Rh4BG345000 Rh4CG359700 Rh4DG339500
rosa_wichuraiana Rw4G029390

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 82, 157, 211
AclWI GGATC 1 cut(s) 39
AcoI YGGCCR 1 cut(s) 162
AcvI CACGTG 1 cut(s) 266
AfaI GTAC 1 cut(s) 436
AfiI CCNNNNNNNGG 1 cut(s) 259
AgsI TTSAA 3 cut(s) 97, 125, 784
AhdI GACNNNNNGTC 1 cut(s) 370
AjuI GAANNNNNNNTTGG 4 cut(s) 596, 628, 655, 687
AluBI AGCT 6 cut(s) 16, 22, 292, 361, 462, 573
AluI AGCT 6 cut(s) 16, 22, 292, 361, 462, 573
Alw26I GTCTC 2 cut(s) 503, 744
AlwI GGATC 1 cut(s) 39
AoxI GGCC 3 cut(s) 162, 298, 701
ApeKI GCWGC 5 cut(s) 214, 459, 462, 465, 570
AspS9I GGNCC 1 cut(s) 283
AsuHPI GGTGA 2 cut(s) 232, 286
AvaII GGWCC 1 cut(s) 283
BalI TGGCCA 1 cut(s) 164
BbrPI CACGTG 1 cut(s) 266
BbsI GAAGAC 1 cut(s) 483
BbvI GCAGC 5 cut(s) 226, 449, 471, 477, 582
BclI TGATCA 4 cut(s) 222, 343, 481, 517
BcoDI GTCTC 2 cut(s) 503, 744
BfmI CTRYAG 1 cut(s) 463
BisI GCNGC 6 cut(s) 212, 215, 460, 463, 466, 571
BlsI GCNGC 6 cut(s) 213, 216, 461, 464, 467, 572
BmcAI AGTACT 1 cut(s) 436
Bme18I GGWCC 1 cut(s) 283
BmeRI GACNNNNNGTC 1 cut(s) 370
BmgT120I GGNCC 1 cut(s) 283
BmiI GGNNCC 1 cut(s) 763
BmsI GCATC 1 cut(s) 184
BpiI GAAGAC 1 cut(s) 483
BsaAI YACGTR 1 cut(s) 266
BsaBI GATNNNNATC 1 cut(s) 30
BsaI GGTCTC 1 cut(s) 503
BsaJI CCNNGG 1 cut(s) 698
BsaXI ACNNNNNCTCC 4 cut(s) 71, 101, 223, 253
Bsc4I CCNNNNNNNGG 1 cut(s) 259
Bse118I RCCGGY 2 cut(s) 217, 296
Bse8I GATNNNNATC 1 cut(s) 30
BseDI CCNNGG 1 cut(s) 698
BseGI GGATG 5 cut(s) 31, 175, 249, 511, 645
BseJI GATNNNNATC 1 cut(s) 30
BseLI CCNNNNNNNGG 1 cut(s) 259
BseMII CTCAG 1 cut(s) 732
BseXI GCAGC 5 cut(s) 226, 449, 471, 477, 582
Bsh1285I CGRYCG 1 cut(s) 681
BshFI GGCC 3 cut(s) 164, 300, 703
BsiEI CGRYCG 1 cut(s) 681
BsiSI CCGG 2 cut(s) 218, 297
BslI CCNNNNNNNGG 1 cut(s) 259
BsmAI GTCTC 2 cut(s) 503, 744
BsmBI CGTCTC 1 cut(s) 744
BsnI GGCC 3 cut(s) 164, 300, 703
Bso31I GGTCTC 1 cut(s) 503
Bsp143I GATC 9 cut(s) 31, 55, 99, 222, 246, 343, 408, 481, 517
BspACI CCGC 3 cut(s) 82, 157, 211
BspANI GGCC 3 cut(s) 164, 300, 703
BspCNI CTCAG 1 cut(s) 731
BspLI GGNNCC 1 cut(s) 763
BspMAI CTGCAG 1 cut(s) 467
BspPI GGATC 1 cut(s) 39
BspTNI GGTCTC 1 cut(s) 503
BsrFI RCCGGY 2 cut(s) 217, 296
BssAI RCCGGY 2 cut(s) 217, 296
BssECI CCNNGG 1 cut(s) 698
BssMI GATC 9 cut(s) 31, 55, 99, 222, 246, 343, 408, 481, 517
Bst6I CTCTTC 1 cut(s) 157
BstBAI YACGTR 1 cut(s) 266
BstC8I GCNNGC 3 cut(s) 261, 629, 735
BstDEI CTNAG 1 cut(s) 718
BstF5I GGATG 5 cut(s) 31, 175, 249, 511, 645
BstKTI GATC 9 cut(s) 34, 58, 102, 225, 249, 346, 411, 484, 520
BstMAI GTCTC 2 cut(s) 503, 744
BstMBI GATC 9 cut(s) 31, 55, 99, 222, 246, 343, 408, 481, 517
BstMCI CGRYCG 1 cut(s) 681
BstMWI GCNNNNNNNGC 3 cut(s) 211, 465, 624
BstNSI RCATGY 1 cut(s) 737
BstSFI CTRYAG 1 cut(s) 463
BstV1I GCAGC 5 cut(s) 226, 449, 471, 477, 582
BstV2I GAAGAC 1 cut(s) 483
BsuRI GGCC 3 cut(s) 164, 300, 703
BtsCI GGATG 5 cut(s) 31, 175, 249, 511, 645
Cac8I GCNNGC 3 cut(s) 261, 629, 735
Cfr10I RCCGGY 2 cut(s) 217, 296
Cfr13I GGNCC 1 cut(s) 283
CseI GACGC 2 cut(s) 374, 726
Csp6I GTAC 1 cut(s) 435
CviAII CATG 9 cut(s) 160, 182, 274, 347, 353, 427, 610, 734, 778
CviQI GTAC 1 cut(s) 435
DdeI CTNAG 1 cut(s) 718
DpnI GATC 9 cut(s) 33, 57, 101, 224, 248, 345, 410, 483, 519
DpnII GATC 9 cut(s) 31, 55, 99, 222, 246, 343, 408, 481, 517
DriI GACNNNNNGTC 1 cut(s) 370
EaeI YGGCCR 1 cut(s) 162
Eam1104I CTCTTC 1 cut(s) 157
Eam1105I GACNNNNNGTC 1 cut(s) 370
EarI CTCTTC 1 cut(s) 157
Eco31I GGTCTC 1 cut(s) 503
Eco47I GGWCC 1 cut(s) 283
Eco72I CACGTG 1 cut(s) 266
Esp3I CGTCTC 1 cut(s) 744
FaeI CATG 9 cut(s) 163, 185, 277, 350, 356, 430, 613, 737, 781
FatI CATG 9 cut(s) 159, 181, 273, 346, 352, 426, 609, 733, 777
FauI CCCGC 1 cut(s) 164
FbaI TGATCA 4 cut(s) 222, 343, 481, 517
Fnu4HI GCNGC 6 cut(s) 212, 215, 460, 463, 466, 571
FokI GGATG 5 cut(s) 38, 162, 236, 518, 632
Fsp4HI GCNGC 6 cut(s) 212, 215, 460, 463, 466, 571
GluI GCNGC 6 cut(s) 212, 215, 460, 463, 466, 571
HaeIII GGCC 3 cut(s) 164, 300, 703
HapII CCGG 2 cut(s) 218, 297
HgaI GACGC 2 cut(s) 374, 726
Hin1II CATG 9 cut(s) 163, 185, 277, 350, 356, 430, 613, 737, 781
HincII GTYRAC 2 cut(s) 38, 751
HindII GTYRAC 2 cut(s) 38, 751
HinfI GANTC 4 cut(s) 323, 714, 722, 798
HpaI GTTAAC 1 cut(s) 751
HpaII CCGG 2 cut(s) 218, 297
HphI GGTGA 2 cut(s) 232, 286
Hpy166II GTNNAC 3 cut(s) 38, 657, 751
Hpy188I TCNGA 2 cut(s) 60, 721
Hpy188III TCNNGA 1 cut(s) 398
Hpy8I GTNNAC 3 cut(s) 38, 657, 751
Hpy99I CGWCG 3 cut(s) 376, 583, 733
HpyAV CCTTC 1 cut(s) 783
HpyCH4IV ACGT 2 cut(s) 265, 753
HpyCH4V TGCA 4 cut(s) 11, 440, 465, 641
HpyF10VI GCNNNNNNNGC 3 cut(s) 211, 465, 624
HpyF3I CTNAG 1 cut(s) 718
HpySE526I ACGT 2 cut(s) 265, 753
Hsp92II CATG 9 cut(s) 163, 185, 277, 350, 356, 430, 613, 737, 781
Ksp22I TGATCA 4 cut(s) 222, 343, 481, 517
KspAI GTTAAC 1 cut(s) 751
Kzo9I GATC 9 cut(s) 31, 55, 99, 222, 246, 343, 408, 481, 517
LmnI GCTCC 2 cut(s) 21, 698
Lsp1109I GCAGC 5 cut(s) 226, 449, 471, 477, 582
LweI GCATC 1 cut(s) 184
MaeII ACGT 2 cut(s) 265, 753
MalI GATC 9 cut(s) 33, 57, 101, 224, 248, 345, 410, 483, 519
MboI GATC 9 cut(s) 31, 55, 99, 222, 246, 343, 408, 481, 517
MboII GAAGA 6 cut(s) 109, 144, 402, 483, 666, 679
MlsI TGGCCA 1 cut(s) 164
MluCI AATT 3 cut(s) 145, 453, 511
MluNI TGGCCA 1 cut(s) 164
MlyI GAGTC 1 cut(s) 792
Mox20I TGGCCA 1 cut(s) 164
MscI TGGCCA 1 cut(s) 164
MseI TTAA 2 cut(s) 420, 750
MslI CAYNNNNRTG 2 cut(s) 180, 351
Msp20I TGGCCA 1 cut(s) 164
MspA1I CMGCKG 3 cut(s) 22, 211, 462
MspI CCGG 2 cut(s) 218, 297
MwoI GCNNNNNNNGC 3 cut(s) 211, 465, 624
NdeII GATC 9 cut(s) 31, 55, 99, 222, 246, 343, 408, 481, 517
NlaIII CATG 9 cut(s) 163, 185, 277, 350, 356, 430, 613, 737, 781
NlaIV GGNNCC 1 cut(s) 763
NmeAIII GCCGAG 1 cut(s) 679
NspI RCATGY 1 cut(s) 737
PaeI GCATGC 1 cut(s) 737
PcsI WCGNNNNNNNCGW 3 cut(s) 665, 674, 734
PfeI GAWTC 3 cut(s) 323, 714, 722
PkrI GCNGC 6 cut(s) 213, 216, 461, 464, 467, 572
PleI GAGTC 1 cut(s) 792
PmaCI CACGTG 1 cut(s) 266
PmlI CACGTG 1 cut(s) 266
PpsI GAGTC 1 cut(s) 792
Ppu21I YACGTR 1 cut(s) 266
PspCI CACGTG 1 cut(s) 266
PspN4I GGNNCC 1 cut(s) 763
PspPI GGNCC 1 cut(s) 283
PstI CTGCAG 1 cut(s) 467
PvuII CAGCTG 2 cut(s) 22, 462
RsaI GTAC 1 cut(s) 436
RsaNI GTAC 1 cut(s) 435
RseI CAYNNNNRTG 2 cut(s) 180, 351
SaqAI TTAA 2 cut(s) 420, 750
SatI GCNGC 6 cut(s) 212, 215, 460, 463, 466, 571
Sau3AI GATC 9 cut(s) 31, 55, 99, 222, 246, 343, 408, 481, 517
Sau96I GGNCC 1 cut(s) 283
ScaI AGTACT 1 cut(s) 436
SchI GAGTC 1 cut(s) 792
SfaNI GCATC 1 cut(s) 184
SfcI CTRYAG 1 cut(s) 463
SinI GGWCC 1 cut(s) 283
SmiMI CAYNNNNRTG 2 cut(s) 180, 351
SphI GCATGC 1 cut(s) 737
Sse9I AATT 3 cut(s) 145, 453, 511
SsiI CCGC 3 cut(s) 82, 157, 211
TaiI ACGT 2 cut(s) 268, 756
TaqI TCGA 4 cut(s) 303, 414, 668, 677
TaqII GACCGA 1 cut(s) 695
TasI AATT 3 cut(s) 145, 453, 511
TatI WGTACW 1 cut(s) 434
TauI GCSGC 1 cut(s) 214
TfiI GAWTC 3 cut(s) 323, 714, 722
Tru1I TTAA 2 cut(s) 420, 750
Tru9I TTAA 2 cut(s) 420, 750
TseI GCWGC 5 cut(s) 214, 459, 462, 465, 570
TspDTI ATGAA 8 cut(s) 17, 86, 198, 262, 341, 443, 539, 778
TspGWI ACGGA 1 cut(s) 518
VpaK11BI GGWCC 1 cut(s) 283
XceI RCATGY 1 cut(s) 737
XcmI CCANNNNNNNNNTGG 1 cut(s) 751
ZrmI AGTACT 1 cut(s) 436
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.