pycom13g03480

VQ motif

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr13
OG0016317
Physical Location & Seq
Reverse (-)
2302370 .. 2303152
783 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom13g03480.1

Sequence Viewer

Length: 783 bp
ATGAAACCTGCAAAGTTCCAGCTGGATGATAATCATCAAGTACAACATTCATCCATTAGGAGGGACCAGATGATGATCAACGGAAGCCGTCCCTCCCCGTTGAAGATCAACCGAAGCTCCCATCTCATCCACAAACCTACCAATAACTATCCCCGCATGGCCGCCGCCTACAAGACGGAGAAGCAACACCACCAGCACCAGCAGCAGCGGCAGCCGGTGATCATCTACACCCAATCTCCGAAAATCATCCACGCGCAGGCGCGCGATTTCATGGCCTTGGTCCAAAATCTCACCGGCCTCTCGCGCTCCGATAATACTCACGACGACGTCAACGACCAAAGCCAAGACACTGACACTACTCATGATGATCATGCAAACGTGAAAGTTTCATCGTGTCAAGACGACCATATCGACAATACAGACATTACTAAATCTGCTATTAGCCGCAGCCGTGATGGAAACGAGTCGTGTTCGGATCTGACGGATGAGATTAATTGTGGTGGTGGGAATTACGATAATAATAGTGTGATTAATAATGTTCAACATCAAGTGGGGAGCTCATCATCTTCCGGATATTCTCCCAATGCCATGTTCAGCAACCCTAGCCCGTATTTTGCAGATATTCCATTGTTTACGCCGACCTCAAATAATTCAGCGGATTTCTTCTGCCCGCCAAGGCCGCTTTACAGATTCTCCGATTCCTCATCGCATGCATCTCCGAACTTCGGCGGTTCGATATCTCCATCAATGTTCAAGTTCATCAAAGGACTCCCAGAATATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
VQ

Protein Analysis

261

Amino Acids

29.04

Weight (kDa)

6.37

Isoelectric Point (pI)

54.54

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
VQ PF05678 79 - 101 1.2e-08 VQ motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016317)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g27220
malus_domestica MD16G1041600.v1.1
prunus_persica Prupe.1G312500_v2.0.a1
pyrus_communis pycom13g03480 pycom16g03600
rosa_chinensis RchiOBHm_Chr4g0435011
rosa_laevigata RLG00000006629
rosa_multiflora Rmu_sc0000400.1_g000033
rosa_roxburghii Rroxscaffold_5G00376200
rosa_rugosa Rorug04G0281600
rosa_samantha Rh4AG337100 Rh4BG345000 Rh4CG359700 Rh4DG339500
rosa_wichuraiana Rw4G029390

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 330
Acc36I ACCTGC 1 cut(s) 16
AccII CGCG 4 cut(s) 254, 262, 264, 304
AccIII TCCGGA 1 cut(s) 569
AciI CCGC 9 cut(s) 154, 162, 165, 208, 445, 656, 671, 680, 729
AclWI GGATC 1 cut(s) 483
AcoI YGGCCR 1 cut(s) 159
AcyI GRCGYC 1 cut(s) 327
AfaI GTAC 1 cut(s) 42
AfiI CCNNNNNNNGG 3 cut(s) 60, 256, 725
AgsI TTSAA 3 cut(s) 103, 542, 754
AjuI GAANNNNNNNTTGG 2 cut(s) 575, 607
AluBI AGCT 3 cut(s) 22, 117, 558
AluI AGCT 3 cut(s) 22, 117, 558
Alw21I GWGCWC 1 cut(s) 560
AlwI GGATC 1 cut(s) 483
Aor13HI TCCGGA 1 cut(s) 569
AoxI GGCC 4 cut(s) 159, 273, 295, 677
ApeKI GCWGC 4 cut(s) 202, 205, 211, 447
AseI ATTAAT 2 cut(s) 492, 531
AspLEI GCGC 4 cut(s) 256, 262, 264, 306
AspS9I GGNCC 2 cut(s) 64, 280
AsuHPI GGTGA 2 cut(s) 229, 283
AvaII GGWCC 2 cut(s) 64, 280
BanII GRGCYC 1 cut(s) 560
Bbv12I GWGCWC 1 cut(s) 560
BbvI GCAGC 4 cut(s) 214, 217, 223, 459
BccI CCATC 3 cut(s) 129, 449, 751
BceAI ACGGC 2 cut(s) 72, 435
BclI TGATCA 3 cut(s) 75, 219, 367
BfaI CTAG 1 cut(s) 603
BfuAI ACCTGC 1 cut(s) 16
BisI GCNGC 9 cut(s) 162, 165, 203, 206, 209, 212, 445, 448, 680
BlsI GCNGC 9 cut(s) 163, 166, 204, 207, 210, 213, 446, 449, 681
Bme18I GGWCC 2 cut(s) 64, 280
BmgT120I GGNCC 2 cut(s) 64, 280
BmiI GGNNCC 1 cut(s) 65
BmsI GCATC 1 cut(s) 722
BsaBI GATNNNNATC 3 cut(s) 30, 33, 74
BsaHI GRCGYC 1 cut(s) 327
BsaJI CCNNGG 2 cut(s) 276, 674
BsaWI WCCGGW 1 cut(s) 569
BsaXI ACNNNNNCTCC 6 cut(s) 101, 131, 220, 250, 677, 707
Bsc4I CCNNNNNNNGG 3 cut(s) 60, 256, 725
Bse118I RCCGGY 2 cut(s) 214, 293
Bse8I GATNNNNATC 3 cut(s) 30, 33, 74
BseAI TCCGGA 1 cut(s) 569
BseDI CCNNGG 2 cut(s) 276, 674
BseGI GGATG 5 cut(s) 31, 50, 126, 246, 490
BseJI GATNNNNATC 3 cut(s) 30, 33, 74
BseLI CCNNNNNNNGG 3 cut(s) 60, 256, 725
BsePI GCGCGC 1 cut(s) 260
BseXI GCAGC 4 cut(s) 214, 217, 223, 459
Bsh1236I CGCG 4 cut(s) 254, 262, 264, 304
BshFI GGCC 4 cut(s) 161, 275, 297, 679
BsiHKAI GWGCWC 1 cut(s) 560
BsiSI CCGG 3 cut(s) 215, 294, 570
BslFI GGGAC 2 cut(s) 75, 77
BslI CCNNNNNNNGG 3 cut(s) 60, 256, 725
BsmFI GGGAC 2 cut(s) 75, 77
BsnI GGCC 4 cut(s) 161, 275, 297, 679
Bsp1286I GDGCHC 1 cut(s) 560
Bsp13I TCCGGA 1 cut(s) 569
Bsp143I GATC 5 cut(s) 75, 105, 219, 367, 475
BspACI CCGC 9 cut(s) 154, 162, 165, 208, 445, 656, 671, 680, 729
BspANI GGCC 4 cut(s) 161, 275, 297, 679
BspEI TCCGGA 1 cut(s) 569
BspFNI CGCG 4 cut(s) 254, 262, 264, 304
BspHI TCATGA 1 cut(s) 361
BspLI GGNNCC 1 cut(s) 65
BspMI ACCTGC 1 cut(s) 16
BspPI GGATC 1 cut(s) 483
BsrFI RCCGGY 2 cut(s) 214, 293
BssAI RCCGGY 2 cut(s) 214, 293
BssECI CCNNGG 2 cut(s) 276, 674
BssHII GCGCGC 1 cut(s) 260
BssMI GATC 5 cut(s) 75, 105, 219, 367, 475
BssNI GRCGYC 1 cut(s) 327
BssT1I CCWWGG 2 cut(s) 276, 674
BstACI GRCGYC 1 cut(s) 327
BstC8I GCNNGC 4 cut(s) 258, 262, 671, 711
BstF5I GGATG 5 cut(s) 31, 50, 126, 246, 490
BstFNI CGCG 4 cut(s) 254, 262, 264, 304
BstHHI GCGC 4 cut(s) 256, 262, 264, 306
BstKTI GATC 5 cut(s) 78, 108, 222, 370, 478
BstMBI GATC 5 cut(s) 75, 105, 219, 367, 475
BstMWI GCNNNNNNNGC 6 cut(s) 202, 208, 211, 303, 603, 679
BstNSI RCATGY 1 cut(s) 713
BstUI CGCG 4 cut(s) 254, 262, 264, 304
BstV1I GCAGC 4 cut(s) 214, 217, 223, 459
BstX2I RGATCY 1 cut(s) 475
BstYI RGATCY 1 cut(s) 475
BsuRI GGCC 4 cut(s) 161, 275, 297, 679
BtgZI GCGATG 1 cut(s) 690
BtsCI GGATG 5 cut(s) 31, 50, 126, 246, 490
BtsIMutI CAGTG 1 cut(s) 348
BveI ACCTGC 1 cut(s) 16
Cac8I GCNNGC 4 cut(s) 258, 262, 671, 711
CciI TCATGA 1 cut(s) 361
CfoI GCGC 4 cut(s) 256, 262, 264, 306
Cfr10I RCCGGY 2 cut(s) 214, 293
Cfr13I GGNCC 2 cut(s) 64, 280
Csp6I GTAC 1 cut(s) 41
CviAII CATG 6 cut(s) 157, 271, 362, 371, 589, 710
CviQI GTAC 1 cut(s) 41
DpnI GATC 5 cut(s) 77, 107, 221, 369, 477
DpnII GATC 5 cut(s) 75, 105, 219, 367, 475
EaeI YGGCCR 1 cut(s) 159
Ecl136II GAGCTC 1 cut(s) 558
Eco130I CCWWGG 2 cut(s) 276, 674
Eco24I GRGCYC 1 cut(s) 560
Eco32I GATATC 1 cut(s) 738
Eco47I GGWCC 2 cut(s) 64, 280
Eco53kI GAGCTC 1 cut(s) 558
EcoICRI GAGCTC 1 cut(s) 558
EcoRV GATATC 1 cut(s) 738
EcoT14I CCWWGG 2 cut(s) 276, 674
EcoT22I ATGCAT 1 cut(s) 715
EcoT38I GRGCYC 1 cut(s) 560
ErhI CCWWGG 2 cut(s) 276, 674
FaeI CATG 6 cut(s) 160, 274, 365, 374, 592, 713
FaiI YATR 7 cut(s) 158, 272, 363, 372, 408, 590, 711
FaqI GGGAC 2 cut(s) 75, 77
FatI CATG 6 cut(s) 156, 270, 361, 370, 588, 709
FauI CCCGC 2 cut(s) 161, 678
FbaI TGATCA 3 cut(s) 75, 219, 367
Fnu4HI GCNGC 9 cut(s) 162, 165, 203, 206, 209, 212, 445, 448, 680
FokI GGATG 5 cut(s) 37, 38, 113, 233, 497
FriOI GRGCYC 1 cut(s) 560
Fsp4HI GCNGC 9 cut(s) 162, 165, 203, 206, 209, 212, 445, 448, 680
FspBI CTAG 1 cut(s) 603
GlaI GCGC 4 cut(s) 255, 261, 263, 305
GluI GCNGC 9 cut(s) 162, 165, 203, 206, 209, 212, 445, 448, 680
HaeIII GGCC 4 cut(s) 161, 275, 297, 679
HapII CCGG 3 cut(s) 215, 294, 570
HhaI GCGC 4 cut(s) 256, 262, 264, 306
Hin1I GRCGYC 1 cut(s) 327
Hin1II CATG 6 cut(s) 160, 274, 365, 374, 592, 713
Hin6I GCGC 4 cut(s) 254, 260, 262, 304
HinP1I GCGC 4 cut(s) 254, 260, 262, 304
HincII GTYRAC 1 cut(s) 331
HindII GTYRAC 1 cut(s) 331
HinfI GANTC 4 cut(s) 464, 690, 698, 768
HpaII CCGG 3 cut(s) 215, 294, 570
HphI GGTGA 2 cut(s) 229, 283
Hpy166II GTNNAC 2 cut(s) 331, 633
Hpy188I TCNGA 6 cut(s) 240, 310, 475, 480, 697, 720
Hpy188III TCNNGA 4 cut(s) 320, 362, 398, 570
Hpy8I GTNNAC 2 cut(s) 331, 633
Hpy99I CGWCG 2 cut(s) 326, 329
HpyCH4IV ACGT 2 cut(s) 327, 378
HpyCH4V TGCA 4 cut(s) 11, 374, 617, 713
HpyF10VI GCNNNNNNNGC 6 cut(s) 202, 208, 211, 303, 603, 679
HpySE526I ACGT 2 cut(s) 327, 378
Hsp92I GRCGYC 1 cut(s) 327
Hsp92II CATG 6 cut(s) 160, 274, 365, 374, 592, 713
HspAI GCGC 4 cut(s) 254, 260, 262, 304
Kpn2I TCCGGA 1 cut(s) 569
Ksp22I TGATCA 3 cut(s) 75, 219, 367
Kzo9I GATC 5 cut(s) 75, 105, 219, 367, 475
LmnI GCTCC 3 cut(s) 122, 311, 555
Lsp1109I GCAGC 4 cut(s) 214, 217, 223, 459
LweI GCATC 1 cut(s) 722
MaeI CTAG 1 cut(s) 603
MaeII ACGT 2 cut(s) 327, 378
MalI GATC 5 cut(s) 77, 107, 221, 369, 477
MboI GATC 5 cut(s) 75, 105, 219, 367, 475
MboII GAAGA 3 cut(s) 115, 558, 655
MflI RGATCY 1 cut(s) 475
MhlI GDGCHC 1 cut(s) 560
MluCI AATT 3 cut(s) 493, 508, 649
MlyI GAGTC 2 cut(s) 473, 762
MnlI CCTC 5 cut(s) 54, 103, 308, 652, 712
Mph1103I ATGCAT 1 cut(s) 715
MroI TCCGGA 1 cut(s) 569
MseI TTAA 2 cut(s) 492, 531
MspA1I CMGCKG 3 cut(s) 22, 208, 656
MspI CCGG 3 cut(s) 215, 294, 570
MvnI CGCG 4 cut(s) 254, 262, 264, 304
MwoI GCNNNNNNNGC 6 cut(s) 202, 208, 211, 303, 603, 679
NdeII GATC 5 cut(s) 75, 105, 219, 367, 475
NlaIII CATG 6 cut(s) 160, 274, 365, 374, 592, 713
NlaIV GGNNCC 1 cut(s) 65
NsiI ATGCAT 1 cut(s) 715
NspI RCATGY 1 cut(s) 713
PaeI GCATGC 1 cut(s) 713
PagI TCATGA 1 cut(s) 361
PauI GCGCGC 1 cut(s) 260
PcsI WCGNNNNNNNCGW 2 cut(s) 330, 408
PfeI GAWTC 2 cut(s) 690, 698
PflFI GACNNNGTC 1 cut(s) 326
PkrI GCNGC 9 cut(s) 163, 166, 204, 207, 210, 213, 446, 449, 681
PleI GAGTC 2 cut(s) 472, 762
PpsI GAGTC 2 cut(s) 472, 762
PshBI ATTAAT 2 cut(s) 492, 531
Psp124BI GAGCTC 1 cut(s) 560
PspN4I GGNNCC 1 cut(s) 65
PspPI GGNCC 2 cut(s) 64, 280
PsuI RGATCY 1 cut(s) 475
PsyI GACNNNGTC 1 cut(s) 326
PteI GCGCGC 1 cut(s) 260
PvuII CAGCTG 1 cut(s) 22
RsaI GTAC 1 cut(s) 42
RsaNI GTAC 1 cut(s) 41
SacI GAGCTC 1 cut(s) 560
SaqAI TTAA 2 cut(s) 492, 531
SatI GCNGC 9 cut(s) 162, 165, 203, 206, 209, 212, 445, 448, 680
Sau3AI GATC 5 cut(s) 75, 105, 219, 367, 475
Sau96I GGNCC 2 cut(s) 64, 280
SchI GAGTC 2 cut(s) 473, 762
SduI GDGCHC 1 cut(s) 560
SetI ASST 8 cut(s) 10, 24, 119, 139, 330, 381, 560, 644
SfaNI GCATC 1 cut(s) 722
SinI GGWCC 2 cut(s) 64, 280
SphI GCATGC 1 cut(s) 713
Sse9I AATT 3 cut(s) 493, 508, 649
SsiI CCGC 9 cut(s) 154, 162, 165, 208, 445, 656, 671, 680, 729
SspI AATATT 1 cut(s) 779
SspMI CTAG 1 cut(s) 603
SstI GAGCTC 1 cut(s) 560
StyI CCWWGG 2 cut(s) 276, 674
TaiI ACGT 2 cut(s) 330, 381
TaqI TCGA 2 cut(s) 411, 734
TasI AATT 3 cut(s) 493, 508, 649
TatI WGTACW 1 cut(s) 40
TauI GCSGC 5 cut(s) 164, 167, 211, 447, 682
TfiI GAWTC 2 cut(s) 690, 698
Tru1I TTAA 2 cut(s) 492, 531
Tru9I TTAA 2 cut(s) 492, 531
TscAI CASTG 1 cut(s) 355
TseI GCWGC 4 cut(s) 202, 205, 211, 447
TspDTI ATGAA 5 cut(s) 17, 39, 259, 378, 748
TspGWI ACGGA 3 cut(s) 96, 191, 497
TspRI CASTG 1 cut(s) 355
Tth111I GACNNNGTC 1 cut(s) 326
VpaK11BI GGWCC 2 cut(s) 64, 280
VspI ATTAAT 2 cut(s) 492, 531
XceI RCATGY 1 cut(s) 713
XspI CTAG 1 cut(s) 603
ZraI GACGTC 1 cut(s) 328
Zsp2I ATGCAT 1 cut(s) 715
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.