Rorug04G0281600

VQ motif

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0016317
Physical Location & Seq
Reverse (-)
45485892 .. 45486960
1069 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0281600.1

Sequence Viewer

Length: 855 bp
ATGGCCTGGAAAGGTATTATTGATAATAGAGATCTTTTAATCCAAGGTATGCGTTGGATTGTTGGTAATGGTATTGACATCAAATTCTGGACTTTCAACTGGGCCTTTTCTTTTCCTTTGATCAATCTTATTTCGACTACTAATAAAATTTCTATTGATATAGATGAGAATGTTAGTGATTATATTGTTAATGGCTGTTGGAATGTTAATAAACTTTATGTTTTCCTTGATCATGATACAGTTAATTCTATTTTAAGTATTCCTCTTCCTGCTTTGGACTCTAGGGATGCATTTGTTTGGAGGCCGACCTCCAGCGGGGATGAGGACTTAAACGACTTTTTCTTCTCCTGCCCCTTTACTGCAAATGTTTGGCGCTCTGCTGGCATTACCAATATAGATTTCCAAAACTTTGAAGAATGGTTTCTTTCCTGGTTCAGGAAGGATTACCAAAAGTCTACTACTGAAAATCTTCTCCTTCTTTGCTGGAAAATTTGGGAGGTGAGGAATAATCTCATCTTCAGACATTCTCCCTCTCTTCCTAACATGGTGGTTCATGCTGCGGCATCCATTGGTGAGAATTACAGAAGGAATAACCCTTGCCTTTTCAAAGGTCCTGCTTCTACCTCTCAAGTTATTCGCTGGCTTCCTCCTTCTGCTGGCTTCGCCAAGCTCAATTTCGCTGGTTCTGTTGTCAACAATAAGAAAGCAGCTGCTGGTTTTGTTATCAGGGATCATGATGGTTCTCCCCTTTTTGCTGGTGCGAGAGCTATTGGTCATGCTTCTGTCCCCATTGCTGAAGGAAGTGTTGTTCGTGATGGTCTTTATCATGCCCTCTTCCTTAACTGTCGAAGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
VQ

Protein Analysis

284

Amino Acids

32.18

Weight (kDa)

7.68

Isoelectric Point (pI)

35.48

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016317)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g27220
malus_domestica MD16G1041600.v1.1
prunus_persica Prupe.1G312500_v2.0.a1
pyrus_communis pycom13g03480 pycom16g03600
rosa_chinensis RchiOBHm_Chr4g0435011
rosa_laevigata RLG00000006629
rosa_multiflora Rmu_sc0000400.1_g000033
rosa_roxburghii Rroxscaffold_5G00376200
rosa_rugosa Rorug04G0281600
rosa_samantha Rh4AG337100 Rh4BG345000 Rh4CG359700 Rh4DG339500
rosa_wichuraiana Rw4G029390

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 455
AciI CCGC 2 cut(s) 315, 560
AclWI GGATC 1 cut(s) 738
AcsI RAATTY 3 cut(s) 83, 147, 489
AcuI CTGAAG 2 cut(s) 502, 816
AfiI CCNNNNNNNGG 3 cut(s) 315, 435, 656
AgsI TTSAA 3 cut(s) 97, 413, 607
AjnI CCWGG 2 cut(s) 5, 428
AjuI GAANNNNNNNTTGG 4 cut(s) 383, 415, 659, 691
AloI GAACNNNNNNTCC 2 cut(s) 792, 824
AluBI AGCT 3 cut(s) 670, 710, 767
AluI AGCT 3 cut(s) 670, 710, 767
AlwI GGATC 1 cut(s) 738
AlwNI CAGNNNCTG 1 cut(s) 713
AoxI GGCC 3 cut(s) 3, 102, 302
ApeKI GCWGC 3 cut(s) 557, 707, 710
ApoI RAATTY 3 cut(s) 83, 147, 489
Asp700I GAANNNNTTC 2 cut(s) 420, 468
AspLEI GCGC 1 cut(s) 375
AspS9I GGNCC 2 cut(s) 102, 611
AsuHPI GGTGA 2 cut(s) 511, 584
AvaII GGWCC 1 cut(s) 611
BbvI GCAGC 3 cut(s) 544, 697, 719
BccI CCATC 2 cut(s) 731, 809
BciT130I CCWGG 2 cut(s) 7, 430
BclI TGATCA 2 cut(s) 120, 229
BfaI CTAG 1 cut(s) 282
BfoI RGCGCY 1 cut(s) 376
BglII AGATCT 1 cut(s) 31
BisI GCNGC 4 cut(s) 558, 561, 708, 711
BlsI GCNGC 4 cut(s) 559, 562, 709, 712
Bme1390I CCNGG 2 cut(s) 7, 430
Bme18I GGWCC 1 cut(s) 611
BmgT120I GGNCC 2 cut(s) 102, 611
BmrFI CCNGG 2 cut(s) 7, 430
BmrI ACTGGG 1 cut(s) 109
BmsI GCATC 2 cut(s) 277, 572
BmuI ACTGGG 1 cut(s) 109
BpmI CTGGAG 1 cut(s) 295
BpuEI CTTGAG 1 cut(s) 612
BsaJI CCNNGG 1 cut(s) 43
Bsc4I CCNNNNNNNGG 3 cut(s) 315, 435, 656
Bse1I ACTGG 1 cut(s) 104
Bse3DI GCAATG 1 cut(s) 789
BseBI CCWGG 2 cut(s) 7, 430
BseDI CCNNGG 1 cut(s) 43
BseGI GGATG 3 cut(s) 292, 325, 563
BseLI CCNNNNNNNGG 3 cut(s) 315, 435, 656
BseMI GCAATG 1 cut(s) 789
BseNI ACTGG 1 cut(s) 104
BseXI GCAGC 3 cut(s) 544, 697, 719
BshFI GGCC 3 cut(s) 5, 104, 304
BslFI GGGAC 1 cut(s) 770
BslI CCNNNNNNNGG 3 cut(s) 315, 435, 656
BsmFI GGGAC 1 cut(s) 770
BsnI GGCC 3 cut(s) 5, 104, 304
Bsp143I GATC 4 cut(s) 31, 120, 229, 730
BspACI CCGC 2 cut(s) 315, 560
BspANI GGCC 3 cut(s) 5, 104, 304
BspHI TCATGA 2 cut(s) 232, 733
BspPI GGATC 1 cut(s) 738
BsrDI GCAATG 1 cut(s) 789
BsrI ACTGG 1 cut(s) 104
BssECI CCNNGG 1 cut(s) 43
BssMI GATC 4 cut(s) 31, 120, 229, 730
BssT1I CCWWGG 1 cut(s) 43
Bst2UI CCWGG 2 cut(s) 7, 430
Bst4CI ACNGT 2 cut(s) 241, 845
Bst6I CTCTTC 3 cut(s) 270, 540, 839
BstC8I GCNNGC 3 cut(s) 382, 641, 658
BstENI CCTNNNNNAGG 1 cut(s) 433
BstF5I GGATG 3 cut(s) 292, 325, 563
BstH2I RGCGCY 1 cut(s) 376
BstHHI GCGC 1 cut(s) 375
BstKTI GATC 4 cut(s) 34, 123, 232, 733
BstMBI GATC 4 cut(s) 31, 120, 229, 730
BstMWI GCNNNNNNNGC 2 cut(s) 381, 662
BstNI CCWGG 2 cut(s) 7, 430
BstSCI CCNGG 2 cut(s) 5, 428
BstV1I GCAGC 3 cut(s) 544, 697, 719
BstX2I RGATCY 1 cut(s) 31
BstYI RGATCY 1 cut(s) 31
BsuRI GGCC 3 cut(s) 5, 104, 304
BtsCI GGATG 3 cut(s) 292, 325, 563
Cac8I GCNNGC 3 cut(s) 382, 641, 658
CaiI CAGNNNCTG 1 cut(s) 713
CciI TCATGA 2 cut(s) 232, 733
CfoI GCGC 1 cut(s) 375
Cfr13I GGNCC 2 cut(s) 102, 611
CviAII CATG 6 cut(s) 233, 544, 554, 734, 776, 827
CviJI RGCY 9 cut(s) 5, 104, 195, 304, 643, 660, 670, 710, 767
CviKI_1 RGCY 9 cut(s) 5, 104, 195, 304, 643, 660, 670, 710, 767
DpnI GATC 4 cut(s) 33, 122, 231, 732
DpnII GATC 4 cut(s) 31, 120, 229, 730
Eam1104I CTCTTC 3 cut(s) 270, 540, 839
EarI CTCTTC 3 cut(s) 270, 540, 839
Eco130I CCWWGG 1 cut(s) 43
Eco47I GGWCC 1 cut(s) 611
Eco57I CTGAAG 2 cut(s) 502, 816
EcoNI CCTNNNNNAGG 1 cut(s) 433
EcoO109I RGGNCCY 1 cut(s) 611
EcoRII CCWGG 2 cut(s) 5, 428
EcoT14I CCWWGG 1 cut(s) 43
EcoT22I ATGCAT 1 cut(s) 292
ErhI CCWWGG 1 cut(s) 43
FaeI CATG 6 cut(s) 236, 547, 557, 737, 779, 830
FaqI GGGAC 1 cut(s) 770
FatI CATG 6 cut(s) 232, 543, 553, 733, 775, 826
FauI CCCGC 1 cut(s) 308
FbaI TGATCA 2 cut(s) 120, 229
FblI GTMKAC 1 cut(s) 455
Fnu4HI GCNGC 4 cut(s) 558, 561, 708, 711
FokI GGATG 3 cut(s) 299, 332, 550
Fsp4HI GCNGC 4 cut(s) 558, 561, 708, 711
FspBI CTAG 1 cut(s) 282
GlaI GCGC 1 cut(s) 374
GluI GCNGC 4 cut(s) 558, 561, 708, 711
GsuI CTGGAG 1 cut(s) 295
HaeII RGCGCY 1 cut(s) 376
HaeIII GGCC 3 cut(s) 5, 104, 304
HhaI GCGC 1 cut(s) 375
Hin1II CATG 6 cut(s) 236, 547, 557, 737, 779, 830
Hin6I GCGC 1 cut(s) 373
HinP1I GCGC 1 cut(s) 373
HincII GTYRAC 1 cut(s) 694
HindII GTYRAC 1 cut(s) 694
HinfI GANTC 1 cut(s) 278
HphI GGTGA 2 cut(s) 511, 584
Hpy166II GTNNAC 2 cut(s) 456, 694
Hpy188I TCNGA 1 cut(s) 521
Hpy188III TCNNGA 5 cut(s) 88, 233, 436, 734, 812
Hpy8I GTNNAC 2 cut(s) 456, 694
HpyAV CCTTC 6 cut(s) 433, 485, 579, 660, 791, 843
HpyCH4III ACNGT 2 cut(s) 241, 845
HpyCH4V TGCA 2 cut(s) 290, 362
HpyF10VI GCNNNNNNNGC 2 cut(s) 381, 662
Hsp92II CATG 6 cut(s) 236, 547, 557, 737, 779, 830
HspAI GCGC 1 cut(s) 373
Ksp22I TGATCA 2 cut(s) 120, 229
Kzo9I GATC 4 cut(s) 31, 120, 229, 730
Lsp1109I GCAGC 3 cut(s) 544, 697, 719
LweI GCATC 2 cut(s) 277, 572
MaeI CTAG 1 cut(s) 282
MalI GATC 4 cut(s) 33, 122, 231, 732
MboI GATC 4 cut(s) 31, 120, 229, 730
MboII GAAGA 7 cut(s) 257, 334, 425, 461, 508, 527, 826
MflI RGATCY 1 cut(s) 31
MluCI AATT 6 cut(s) 83, 147, 244, 489, 577, 673
MlyI GAGTC 1 cut(s) 272
MmeI TCCRAC 2 cut(s) 35, 179
Mph1103I ATGCAT 1 cut(s) 292
MroXI GAANNNNTTC 2 cut(s) 420, 468
MseI TTAA 7 cut(s) 38, 189, 207, 243, 254, 329, 840
MspA1I CMGCKG 2 cut(s) 315, 710
MspR9I CCNGG 2 cut(s) 7, 430
MvaI CCWGG 2 cut(s) 7, 430
MwoI GCNNNNNNNGC 2 cut(s) 381, 662
NdeII GATC 4 cut(s) 31, 120, 229, 730
NlaIII CATG 6 cut(s) 236, 547, 557, 737, 779, 830
NsiI ATGCAT 1 cut(s) 292
PagI TCATGA 2 cut(s) 232, 733
PdmI GAANNNNTTC 2 cut(s) 420, 468
PkrI GCNGC 4 cut(s) 559, 562, 709, 712
PleI GAGTC 1 cut(s) 272
PpsI GAGTC 1 cut(s) 272
PpuMI RGGWCCY 1 cut(s) 611
Psp5II RGGWCCY 1 cut(s) 611
Psp6I CCWGG 2 cut(s) 5, 428
PspGI CCWGG 2 cut(s) 5, 428
PspPI GGNCC 2 cut(s) 102, 611
PspPPI RGGWCCY 1 cut(s) 611
PstNI CAGNNNCTG 1 cut(s) 713
PsuI RGATCY 1 cut(s) 31
PvuII CAGCTG 1 cut(s) 710
SaqAI TTAA 7 cut(s) 38, 189, 207, 243, 254, 329, 840
SatI GCNGC 4 cut(s) 558, 561, 708, 711
Sau3AI GATC 4 cut(s) 31, 120, 229, 730
Sau96I GGNCC 2 cut(s) 102, 611
SchI GAGTC 1 cut(s) 272
ScrFI CCNGG 2 cut(s) 7, 430
SfaNI GCATC 2 cut(s) 277, 572
SinI GGWCC 1 cut(s) 611
SmlI CTYRAG 1 cut(s) 627
SmoI CTYRAG 1 cut(s) 627
Sse9I AATT 6 cut(s) 83, 147, 244, 489, 577, 673
SsiI CCGC 2 cut(s) 315, 560
SspMI CTAG 1 cut(s) 282
StyD4I CCNGG 2 cut(s) 5, 428
StyI CCWWGG 1 cut(s) 43
TaaI ACNGT 2 cut(s) 241, 845
TaqI TCGA 2 cut(s) 134, 847
TasI AATT 6 cut(s) 83, 147, 244, 489, 577, 673
TauI GCSGC 1 cut(s) 563
Tru1I TTAA 7 cut(s) 38, 189, 207, 243, 254, 329, 840
Tru9I TTAA 7 cut(s) 38, 189, 207, 243, 254, 329, 840
TseI GCWGC 3 cut(s) 557, 707, 710
TspDTI ATGAA 1 cut(s) 542
VpaK11BI GGWCC 1 cut(s) 611
XagI CCTNNNNNAGG 1 cut(s) 433
XapI RAATTY 3 cut(s) 83, 147, 489
XmiI GTMKAC 1 cut(s) 455
XmnI GAANNNNTTC 2 cut(s) 420, 468
XspI CTAG 1 cut(s) 282
Zsp2I ATGCAT 1 cut(s) 292
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.