Rmu_sc0000400.1_g000033

VQ motif

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000400.1
OG0016317
Physical Location & Seq
Forward (+)
162006 .. 162758
753 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000400.1_g000033.1.cds

Sequence Viewer

Length: 753 bp
atgaactcagtgcagacgttccatgaaaatgaacagcgttcagttgcaaggaaggagacgatgatcagtggcaaccgaccctctccattgaagatcaacagagattcttatctcattcataaacaacagccttctcgcatggccggagctcatggatctcatcaacagcaacaacagcggcaccatccggtcatcatttacactcagtcaccaaaagtcatccacacacgaccccacgatttcatggctttggtccaaaagctcaccggcctctcacggtccgatgaagaacacgccgttaatgaagaccaaactcataacgaagctgctcacaaaaccctacatgctcgtcaagttgaggatagtaccatcatccacaggtgcattaatgataatgaaacctcttctggtgtgacagatgaaattagtggtggtggtgatgatcatcttcatggggagaatattaacgttggcggtgatgttcgagctgacagttcctgttttaaagcatcatcagcaggtccaaatcgcactttaagtggctttagcccaatgcagcagcaaaatcagtatccatattttgcagatattccaatgtttacgccgacttcgatggatcatcatcacttcctctgctcacctcgcccgctttacagatttccggattcgagctcacagatctctccgagtactctttgcggttcaatctctccttcaatgttcaagttcatcaagggactaccagaatactaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
VQ

Protein Analysis

250

Amino Acids

28.01

Weight (kDa)

6.64

Isoelectric Point (pI)

54.59

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016317)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g27220
malus_domestica MD16G1041600.v1.1
prunus_persica Prupe.1G312500_v2.0.a1
pyrus_communis pycom13g03480 pycom16g03600
rosa_chinensis RchiOBHm_Chr4g0435011
rosa_laevigata RLG00000006629
rosa_multiflora Rmu_sc0000400.1_g000033
rosa_roxburghii Rroxscaffold_5G00376200
rosa_rugosa Rorug04G0281600
rosa_samantha Rh4AG337100 Rh4BG345000 Rh4CG359700 Rh4DG339500
rosa_wichuraiana Rw4G029390

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 509
AccB1I GGYRCC 1 cut(s) 180
AccIII TCCGGA 1 cut(s) 661
AciI CCGC 4 cut(s) 178, 474, 647, 699
AclI AACGTT 1 cut(s) 468
AclWI GGATC 2 cut(s) 163, 624
AcoI YGGCCR 1 cut(s) 141
AfaI GTAC 2 cut(s) 367, 691
AgsI TTSAA 4 cut(s) 91, 705, 717, 724
AluBI AGCT 5 cut(s) 149, 262, 326, 488, 672
AluI AGCT 5 cut(s) 149, 262, 326, 488, 672
Alw21I GWGCWC 2 cut(s) 151, 674
Alw26I GTCTC 1 cut(s) 50
AlwI GGATC 2 cut(s) 163, 624
AlwNI CAGNNNCTG 1 cut(s) 498
Aor13HI TCCGGA 1 cut(s) 661
AoxI GGCC 2 cut(s) 141, 268
ApeKI GCWGC 3 cut(s) 326, 556, 559
AseI ATTAAT 1 cut(s) 387
AspS9I GGNCC 3 cut(s) 253, 279, 521
AsuHPI GGTGA 5 cut(s) 201, 256, 449, 488, 630
AvaII GGWCC 3 cut(s) 253, 279, 521
BanI GGYRCC 1 cut(s) 180
BanII GRGCYC 2 cut(s) 151, 674
BbsI GAAGAC 1 cut(s) 312
Bbv12I GWGCWC 2 cut(s) 151, 674
BbvI GCAGC 3 cut(s) 313, 568, 571
BccI CCATC 3 cut(s) 192, 377, 607
BceAI ACGGC 1 cut(s) 281
BciVI GTATCC 1 cut(s) 582
BclI TGATCA 2 cut(s) 63, 442
BcoDI GTCTC 1 cut(s) 50
BfuAI ACCTGC 1 cut(s) 509
BfuI GTATCC 1 cut(s) 582
BglII AGATCT 1 cut(s) 678
BisI GCNGC 4 cut(s) 179, 327, 557, 560
BlsI GCNGC 4 cut(s) 180, 328, 558, 561
BmcAI AGTACT 1 cut(s) 691
Bme18I GGWCC 3 cut(s) 253, 279, 521
BmgT120I GGNCC 3 cut(s) 253, 279, 521
BmiI GGNNCC 1 cut(s) 182
BmsI GCATC 1 cut(s) 518
BpiI GAAGAC 1 cut(s) 312
BsaBI GATNNNNATC 3 cut(s) 108, 444, 621
BsaWI WCCGGW 2 cut(s) 187, 661
Bse118I RCCGGY 1 cut(s) 266
Bse8I GATNNNNATC 3 cut(s) 108, 444, 621
BseAI TCCGGA 1 cut(s) 661
BseGI GGATG 3 cut(s) 184, 219, 372
BseJI GATNNNNATC 3 cut(s) 108, 444, 621
BseMII CTCAG 2 cut(s) 21, 218
BseXI GCAGC 3 cut(s) 313, 568, 571
BsgI GTGCAG 1 cut(s) 32
BshFI GGCC 2 cut(s) 143, 270
BshNI GGYRCC 1 cut(s) 180
BsiHKAI GWGCWC 2 cut(s) 151, 674
BsiSI CCGG 4 cut(s) 144, 188, 267, 662
BsmAI GTCTC 1 cut(s) 50
BsmBI CGTCTC 1 cut(s) 50
BsnI GGCC 2 cut(s) 143, 270
Bsp1286I GDGCHC 2 cut(s) 151, 674
Bsp13I TCCGGA 1 cut(s) 661
Bsp143I GATC 6 cut(s) 63, 93, 155, 442, 616, 678
BspACI CCGC 4 cut(s) 178, 474, 647, 699
BspANI GGCC 2 cut(s) 143, 270
BspCNI CTCAG 2 cut(s) 20, 217
BspEI TCCGGA 1 cut(s) 661
BspLI GGNNCC 1 cut(s) 182
BspMI ACCTGC 1 cut(s) 509
BspPI GGATC 2 cut(s) 163, 624
BspT107I GGYRCC 1 cut(s) 180
BsrFI RCCGGY 1 cut(s) 266
BssAI RCCGGY 1 cut(s) 266
BssMI GATC 6 cut(s) 63, 93, 155, 442, 616, 678
Bst4CI ACNGT 2 cut(s) 279, 494
Bst6I CTCTTC 1 cut(s) 409
BstC8I GCNNGC 1 cut(s) 647
BstDEI CTNAG 2 cut(s) 7, 204
BstF5I GGATG 3 cut(s) 184, 219, 372
BstKTI GATC 6 cut(s) 66, 96, 158, 445, 619, 681
BstMAI GTCTC 1 cut(s) 50
BstMBI GATC 6 cut(s) 63, 93, 155, 442, 616, 678
BstMWI GCNNNNNNNGC 3 cut(s) 175, 515, 642
BstNSI RCATGY 1 cut(s) 347
BstV1I GCAGC 3 cut(s) 313, 568, 571
BstV2I GAAGAC 1 cut(s) 312
BstX2I RGATCY 2 cut(s) 155, 678
BstYI RGATCY 2 cut(s) 155, 678
BsuI GTATCC 1 cut(s) 582
BsuRI GGCC 2 cut(s) 143, 270
BtsCI GGATG 3 cut(s) 184, 219, 372
BtsIMutI CAGTG 2 cut(s) 15, 73
BveI ACCTGC 1 cut(s) 509
Cac8I GCNNGC 1 cut(s) 647
CaiI CAGNNNCTG 1 cut(s) 498
Cfr10I RCCGGY 1 cut(s) 266
Cfr13I GGNCC 3 cut(s) 253, 279, 521
CpoI CGGWCCG 1 cut(s) 279
Csp6I GTAC 2 cut(s) 366, 690
CspI CGGWCCG 1 cut(s) 279
CviAII CATG 6 cut(s) 23, 139, 152, 244, 344, 452
CviQI GTAC 2 cut(s) 366, 690
DdeI CTNAG 2 cut(s) 7, 204
DpnI GATC 6 cut(s) 65, 95, 157, 444, 618, 680
DpnII GATC 6 cut(s) 63, 93, 155, 442, 616, 678
DraI TTTAAA 1 cut(s) 505
EaeI YGGCCR 1 cut(s) 141
Eam1104I CTCTTC 1 cut(s) 409
EarI CTCTTC 1 cut(s) 409
Ecl136II GAGCTC 2 cut(s) 149, 672
Eco24I GRGCYC 2 cut(s) 151, 674
Eco47I GGWCC 3 cut(s) 253, 279, 521
Eco53kI GAGCTC 2 cut(s) 149, 672
EcoICRI GAGCTC 2 cut(s) 149, 672
EcoT38I GRGCYC 2 cut(s) 151, 674
Esp3I CGTCTC 1 cut(s) 50
FaeI CATG 6 cut(s) 26, 142, 155, 247, 347, 455
FaiI YATR 9 cut(s) 24, 120, 140, 153, 245, 318, 345, 453, 577
FatI CATG 6 cut(s) 22, 138, 151, 243, 343, 451
FauI CCCGC 1 cut(s) 654
FbaI TGATCA 2 cut(s) 63, 442
Fnu4HI GCNGC 4 cut(s) 179, 327, 557, 560
FokI GGATG 3 cut(s) 171, 206, 359
FriOI GRGCYC 2 cut(s) 151, 674
Fsp4HI GCNGC 4 cut(s) 179, 327, 557, 560
GluI GCNGC 4 cut(s) 179, 327, 557, 560
HaeIII GGCC 2 cut(s) 143, 270
HapII CCGG 4 cut(s) 144, 188, 267, 662
Hin1II CATG 6 cut(s) 26, 142, 155, 247, 347, 455
HinfI GANTC 2 cut(s) 104, 665
HpaII CCGG 4 cut(s) 144, 188, 267, 662
HphI GGTGA 5 cut(s) 201, 256, 449, 488, 630
Hpy166II GTNNAC 1 cut(s) 600
Hpy188I TCNGA 2 cut(s) 283, 687
Hpy188III TCNNGA 1 cut(s) 662
Hpy8I GTNNAC 1 cut(s) 600
HpyAV CCTTC 3 cut(s) 46, 141, 723
HpyCH4III ACNGT 2 cut(s) 279, 494
HpyCH4IV ACGT 2 cut(s) 17, 468
HpyCH4V TGCA 5 cut(s) 13, 47, 384, 556, 584
HpyF10VI GCNNNNNNNGC 3 cut(s) 175, 515, 642
HpyF3I CTNAG 2 cut(s) 7, 204
HpySE526I ACGT 2 cut(s) 17, 468
Hsp92II CATG 6 cut(s) 26, 142, 155, 247, 347, 455
Kpn2I TCCGGA 1 cut(s) 661
Ksp22I TGATCA 2 cut(s) 63, 442
Kzo9I GATC 6 cut(s) 63, 93, 155, 442, 616, 678
LmnI GCTCC 1 cut(s) 146
LpnPI CCDG 8 cut(s) 157, 201, 280, 364, 393, 504, 511, 675
Lsp1109I GCAGC 3 cut(s) 313, 568, 571
LweI GCATC 1 cut(s) 518
MaeII ACGT 2 cut(s) 17, 468
MaeIII GTNAC 2 cut(s) 207, 412
MalI GATC 6 cut(s) 65, 95, 157, 444, 618, 680
MboI GATC 6 cut(s) 63, 93, 155, 442, 616, 678
MboII GAAGA 5 cut(s) 103, 299, 317, 396, 440
MflI RGATCY 2 cut(s) 155, 678
MhlI GDGCHC 2 cut(s) 151, 674
MluCI AATT 1 cut(s) 423
MnlI CCTC 6 cut(s) 91, 281, 352, 412, 641, 651
MroI TCCGGA 1 cut(s) 661
MseI TTAA 5 cut(s) 300, 387, 465, 504, 536
MslI CAYNNNNRTG 2 cut(s) 27, 450
MspA1I CMGCKG 1 cut(s) 178
MspI CCGG 4 cut(s) 144, 188, 267, 662
MwoI GCNNNNNNNGC 3 cut(s) 175, 515, 642
NdeII GATC 6 cut(s) 63, 93, 155, 442, 616, 678
NlaIII CATG 6 cut(s) 26, 142, 155, 247, 347, 455
NlaIV GGNNCC 1 cut(s) 182
NmuCI GTSAC 2 cut(s) 207, 412
NspI RCATGY 1 cut(s) 347
PcsI WCGNNNNNNNCGW 1 cut(s) 608
PfeI GAWTC 2 cut(s) 104, 665
PkrI GCNGC 4 cut(s) 180, 328, 558, 561
PshBI ATTAAT 1 cut(s) 387
Psp124BI GAGCTC 2 cut(s) 151, 674
Psp1406I AACGTT 1 cut(s) 468
PspN4I GGNNCC 1 cut(s) 182
PspPI GGNCC 3 cut(s) 253, 279, 521
PstNI CAGNNNCTG 1 cut(s) 498
PsuI RGATCY 2 cut(s) 155, 678
RsaI GTAC 2 cut(s) 367, 691
RsaNI GTAC 2 cut(s) 366, 690
RseI CAYNNNNRTG 2 cut(s) 27, 450
Rsr2I CGGWCCG 1 cut(s) 279
RsrII CGGWCCG 1 cut(s) 279
SacI GAGCTC 2 cut(s) 151, 674
SaqAI TTAA 5 cut(s) 300, 387, 465, 504, 536
SatI GCNGC 4 cut(s) 179, 327, 557, 560
Sau3AI GATC 6 cut(s) 63, 93, 155, 442, 616, 678
Sau96I GGNCC 3 cut(s) 253, 279, 521
ScaI AGTACT 1 cut(s) 691
SduI GDGCHC 2 cut(s) 151, 674
SfaNI GCATC 1 cut(s) 518
SinI GGWCC 3 cut(s) 253, 279, 521
SmiMI CAYNNNNRTG 2 cut(s) 27, 450
Sse9I AATT 1 cut(s) 423
SsiI CCGC 4 cut(s) 178, 474, 647, 699
SspI AATATT 1 cut(s) 463
SstI GAGCTC 2 cut(s) 151, 674
TaaI ACNGT 2 cut(s) 279, 494
TaiI ACGT 2 cut(s) 20, 471
TaqI TCGA 3 cut(s) 484, 611, 668
TasI AATT 1 cut(s) 423
TatI WGTACW 1 cut(s) 689
TauI GCSGC 1 cut(s) 181
TfiI GAWTC 2 cut(s) 104, 665
Tru1I TTAA 5 cut(s) 300, 387, 465, 504, 536
Tru9I TTAA 5 cut(s) 300, 387, 465, 504, 536
TscAI CASTG 2 cut(s) 15, 73
TseFI GTSAC 2 cut(s) 207, 412
TseI GCWGC 3 cut(s) 326, 556, 559
Tsp45I GTSAC 2 cut(s) 207, 412
TspRI CASTG 2 cut(s) 15, 73
VpaK11BI GGWCC 3 cut(s) 253, 279, 521
VspI ATTAAT 1 cut(s) 387
XceI RCATGY 1 cut(s) 347
ZrmI AGTACT 1 cut(s) 691
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.