Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0015451

Physical Location & Seq

Genomic Coordinates Reverse (-)

33957867 .. 33962799

Gene Structure 4933 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G373400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1116 bp

ATGCTATCGCGACGACTTCCTTCTACGGCGGTTTCTTTCTCATGGCGGCGGTCCAGACTCCCGAACTTGGTCCCCACTCAGACGGTGCAGATGGTTCAGACATCTCTCGAGTCACTCTCCGTTTGCCCTAATAAAGTTTGCATGATTGCCTTCTGTTATTCCACCAGTCCTCAAATATCCGCCGACTTGACCGACTCAATCCCCCAACCGCCGTCAAAACAAGGTCCTCTTCAACCCGGTCTGTATCTAGTTGGAACTCCAATTGGAAACCTCGAAGATATCACTCTACGAGCCCTCCGAGTCTTAAAATCAGCTCATGTAATACTTTCAGAAGATACAAGGCATTCGGGAAAGCTGCTCCACCATTACAATATTAAAACTCCCCTTCTGAGCTATCACAAATTCAATGAAACCCAAAGGGAACAAACTGTGTTGAAGAGGCTGAAGGAAGGTGAAATTGTGGCGCTCATAAGTGACGCTGGGATGCCAGGCATCAGTGATCCTGGCACCGAATTGGCAAAGCTATGTGTGCATGAAAACATCCCTGTTATTCCTATACCTGGGCCGTCCGCTTTTGTTGCTGCCCTTTCTGCCTCTGGCCTATCCACTGATGAGTTTACGTTTGTTGGATTTCTCCCTAAACATGCTGGATCTAGAAGAGAGAGGCTGATGGTTTCAGCAAATGAGGCGACGACACAAATATTCTATGTGCCTCCCCACAAGCTTCGTCAGTTTCTTGAAGAGGCTTCTTCACTTTTTGGTGTTACAAGACAATGTGTCATAGCTCGTGAAATTACAAAAGTTCATGAAGAGTTTTGGCGGGGTACATTGGGAGAAGCTGAAGAAGTGTTTTCTACTCGGACACCAAGAGGTGAAATTACAGTGTTAGTTGAAAGAAAGGAAAATTCTCCGGTTGAAACACCATCAGAGTCTCAGCTTGAGGATGAGTTAAGAGATTTGATTTCCAATGGGCATAGCCTTTCTACGGCTGTCAAATTAGTGGCTGATGGCACATCAGTGAGAAAGAAAACGATATATTCAATCGCATTGAGAAAATTTGGGAAGCAACTTGGTTCAGAGAGTCATGAAGATCCATGCAAGCGACAGCTGGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000154 GO:0000451 GO:0000453 GO:0001510 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0010467 GO:0016070 GO:0016072 GO:0022613 GO:0031167 GO:0032259 GO:0034470 GO:0034641 GO:0034660 GO:0042254 GO:0043170 GO:0043412 GO:0043414 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0046483 GO:0071704 GO:0071840 GO:0090304 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TP_methylase

Protein Analysis

372

Amino Acids

41.07

Weight (kDa)

8.17

Isoelectric Point (pI)

49.4

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015451)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G45110
fragaria_vesca	FvH4_2g39240
malus_domestica	MD08G1024000.v1.1 MD15G1021600.v1.1
prunus_persica	Prupe.1G373400_v2.0.a1
pyrus_communis	pycom15g01790
rosa_chinensis	RchiOBHm_Chr6g0301771
rosa_laevigata	RLG00000011223
rosa_multiflora	Rmu_sc0005454.1_g000021
rosa_roxburghii	Rroxscaffold_7G00166420
rosa_rugosa	Rorug06G0309500
rosa_samantha	Rh6AG421400 Rh6BG428200 Rh6CG434700 Rh6DG421600
rosa_wichuraiana	Rw6G036480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	506
AccII	CGCG	1 cut(s)	10
AciI	CCGC	7 cut(s)	29, 46, 49, 180, 209, 570, 820
AclWI	GGATC	3 cut(s)	494, 658, 1085
AcsI	RAATTY	3 cut(s)	401, 904, 1055
AcuI	CTGAAG	2 cut(s)	464, 861
AfaI	GTAC	1 cut(s)	826
AfiI	CCNNNNNNNGG	3 cut(s)	67, 560, 985
AgsI	TTSAA	7 cut(s)	233, 406, 436, 740, 893, 917, 1041
AhdI	GACNNNNNGTC	1 cut(s)	776
AjnI	CCWGG	3 cut(s)	487, 502, 559
AleI	CACNNNNGTG	1 cut(s)	1016
AluBI	AGCT	9 cut(s)	314, 355, 393, 523, 724, 785, 839, 937, 1108
AluI	AGCT	9 cut(s)	314, 355, 393, 523, 724, 785, 839, 937, 1108
Alw26I	GTCTC	1 cut(s)	936
AlwI	GGATC	3 cut(s)	494, 658, 1085
Ama87I	CYCGRG	1 cut(s)	107
AoxI	GGCC	2 cut(s)	563, 598
ApeKI	GCWGC	2 cut(s)	355, 581
ApoI	RAATTY	3 cut(s)	401, 904, 1055
AspLEI	GCGC	1 cut(s)	466
AspS9I	GGNCC	4 cut(s)	51, 70, 224, 563
AsuC2I	CCSGG	1 cut(s)	237
AsuHPI	GGTGA	2 cut(s)	464, 884
AvaI	CYCGRG	1 cut(s)	107
AvaII	GGWCC	3 cut(s)	51, 70, 224
BanI	GGYRCC	1 cut(s)	506
BanII	GRGCYC	1 cut(s)	295
BauI	CACGAG	1 cut(s)	786
BbvI	GCAGC	2 cut(s)	342, 568
BccI	CCATC	4 cut(s)	85, 664, 931, 1001
BceAI	ACGGC	4 cut(s)	42, 196, 550, 1002
BciT130I	CCWGG	3 cut(s)	489, 504, 561
BcnI	CCSGG	1 cut(s)	237
BcoDI	GTCTC	1 cut(s)	936
BfaI	CTAG	2 cut(s)	248, 654
BfoI	RGCGCY	1 cut(s)	467
BisI	GCNGC	3 cut(s)	47, 356, 582
BlsI	GCNGC	3 cut(s)	48, 357, 583
Bme1390I	CCNGG	4 cut(s)	237, 489, 504, 561
Bme18I	GGWCC	3 cut(s)	51, 70, 224
BmeRI	GACNNNNNGTC	1 cut(s)	776
BmeT110I	CYCGRG	1 cut(s)	107
BmgT120I	GGNCC	4 cut(s)	51, 70, 224, 563
BmiI	GGNNCC	2 cut(s)	72, 508
BmrFI	CCNGG	4 cut(s)	237, 489, 504, 561
BmsI	GCATC	2 cut(s)	474, 501
BplI	GAGNNNNNCTC	2 cut(s)	101, 133
BpuEI	CTTGAG	1 cut(s)	959
BpuMI	CCSGG	1 cut(s)	237
BsaJI	CCNNGG	1 cut(s)	560
BsaWI	WCCGGW	1 cut(s)	910
BsaXI	ACNNNNNCTCC	2 cut(s)	279, 309
Bsc4I	CCNNNNNNNGG	3 cut(s)	67, 560, 985
Bse1I	ACTGG	1 cut(s)	165
BseBI	CCWGG	3 cut(s)	489, 504, 561
BseDI	CCNNGG	1 cut(s)	560
BseGI	GGATG	3 cut(s)	489, 540, 949
BseLI	CCNNNNNNNGG	3 cut(s)	67, 560, 985
BseMII	CTCAG	3 cut(s)	92, 380, 947
BseNI	ACTGG	1 cut(s)	165
BseXI	GCAGC	2 cut(s)	342, 568
BseYI	CCCAGC	1 cut(s)	479
BsgI	GTGCAG	1 cut(s)	107
Bsh1236I	CGCG	1 cut(s)	10
BshFI	GGCC	2 cut(s)	565, 600
BshNI	GGYRCC	1 cut(s)	506
BsiHKCI	CYCGRG	1 cut(s)	107
BsiSI	CCGG	2 cut(s)	237, 911
BslFI	GGGAC	1 cut(s)	56
BslI	CCNNNNNNNGG	3 cut(s)	67, 560, 985
BsmAI	GTCTC	1 cut(s)	936
BsmFI	GGGAC	1 cut(s)	56
BsmI	GAATGC	1 cut(s)	343
BsnI	GGCC	2 cut(s)	565, 600
BsoBI	CYCGRG	1 cut(s)	107
Bsp1286I	GDGCHC	1 cut(s)	295
Bsp143I	GATC	3 cut(s)	499, 650, 1090
Bsp68I	TCGCGA	1 cut(s)	10
BspACI	CCGC	7 cut(s)	29, 46, 49, 180, 209, 570, 820
BspANI	GGCC	2 cut(s)	565, 600
BspCNI	CTCAG	3 cut(s)	91, 381, 946
BspFNI	CGCG	1 cut(s)	10
BspHI	TCATGA	2 cut(s)	805, 1084
BspLI	GGNNCC	2 cut(s)	72, 508
BspPI	GGATC	3 cut(s)	494, 658, 1085
BspT107I	GGYRCC	1 cut(s)	506
BsrI	ACTGG	1 cut(s)	165
BssECI	CCNNGG	1 cut(s)	560
BssMI	GATC	3 cut(s)	499, 650, 1090
BssSI	CACGAG	1 cut(s)	786
Bst2BI	CACGAG	1 cut(s)	786
Bst2UI	CCWGG	3 cut(s)	489, 504, 561
Bst4CI	ACNGT	3 cut(s)	85, 430, 883
Bst6I	CTCTTC	5 cut(s)	234, 431, 652, 735, 804
BstC8I	GCNNGC	1 cut(s)	1100
BstDEI	CTNAG	3 cut(s)	78, 389, 933
BstF5I	GGATG	3 cut(s)	489, 540, 949
BstFNI	CGCG	1 cut(s)	10
BstH2I	RGCGCY	1 cut(s)	467
BstHHI	GCGC	1 cut(s)	466
BstKTI	GATC	3 cut(s)	502, 653, 1093
BstMAI	GTCTC	1 cut(s)	936
BstMBI	GATC	3 cut(s)	499, 650, 1090
BstMWI	GCNNNNNNNGC	4 cut(s)	529, 578, 590, 686
BstNI	CCWGG	3 cut(s)	489, 504, 561
BstNSI	RCATGY	1 cut(s)	647
BstSCI	CCNGG	4 cut(s)	235, 487, 502, 559
BstUI	CGCG	1 cut(s)	10
BstV1I	GCAGC	2 cut(s)	342, 568
BstX2I	RGATCY	2 cut(s)	650, 1090
BstYI	RGATCY	2 cut(s)	650, 1090
BsuRI	GGCC	2 cut(s)	565, 600
BtsCI	GGATG	3 cut(s)	489, 540, 949
BtsIMutI	CAGTG	4 cut(s)	502, 606, 888, 1023
BtuMI	TCGCGA	1 cut(s)	10
Cac8I	GCNNGC	1 cut(s)	1100
CciI	TCATGA	2 cut(s)	805, 1084
CfoI	GCGC	1 cut(s)	466
Cfr13I	GGNCC	4 cut(s)	51, 70, 224, 563
CseI	GACGC	1 cut(s)	485
Csp6I	GTAC	1 cut(s)	825
CviAII	CATG	8 cut(s)	42, 142, 317, 533, 644, 806, 1085, 1095
CviQI	GTAC	1 cut(s)	825
DdeI	CTNAG	3 cut(s)	78, 389, 933
DpnI	GATC	3 cut(s)	501, 652, 1092
DpnII	GATC	3 cut(s)	499, 650, 1090
DriI	GACNNNNNGTC	1 cut(s)	776
Eam1104I	CTCTTC	5 cut(s)	234, 431, 652, 735, 804
Eam1105I	GACNNNNNGTC	1 cut(s)	776
EarI	CTCTTC	5 cut(s)	234, 431, 652, 735, 804
EciI	GGCGGA	1 cut(s)	169
Eco24I	GRGCYC	1 cut(s)	295
Eco32I	GATATC	1 cut(s)	280
Eco47I	GGWCC	3 cut(s)	51, 70, 224
Eco57I	CTGAAG	2 cut(s)	464, 861
Eco88I	CYCGRG	1 cut(s)	107
EcoO109I	RGGNCCY	1 cut(s)	224
EcoRII	CCWGG	3 cut(s)	487, 502, 559
EcoRV	GATATC	1 cut(s)	280
EcoT38I	GRGCYC	1 cut(s)	295
FaeI	CATG	8 cut(s)	45, 145, 320, 536, 647, 809, 1088, 1098
FalI	AAGNNNNNCTT	2 cut(s)	213, 245
FaqI	GGGAC	1 cut(s)	56
FatI	CATG	8 cut(s)	41, 141, 316, 532, 643, 805, 1084, 1094
FauI	CCCGC	1 cut(s)	813
Fnu4HI	GCNGC	3 cut(s)	47, 356, 582
FokI	GGATG	3 cut(s)	496, 527, 956
FriOI	GRGCYC	1 cut(s)	295
Fsp4HI	GCNGC	3 cut(s)	47, 356, 582
FspBI	CTAG	2 cut(s)	248, 654
GlaI	GCGC	1 cut(s)	465
GluI	GCNGC	3 cut(s)	47, 356, 582
GsaI	CCCAGC	1 cut(s)	483
HaeII	RGCGCY	1 cut(s)	467
HaeIII	GGCC	2 cut(s)	565, 600
HapII	CCGG	2 cut(s)	237, 911
HgaI	GACGC	1 cut(s)	485
HhaI	GCGC	1 cut(s)	466
Hin1II	CATG	8 cut(s)	45, 145, 320, 536, 647, 809, 1088, 1098
Hin6I	GCGC	1 cut(s)	464
HinP1I	GCGC	1 cut(s)	464
HindIII	AAGCTT	1 cut(s)	722
HinfI	GANTC	6 cut(s)	57, 110, 194, 300, 929, 1081
HpaII	CCGG	2 cut(s)	237, 911
HphI	GGTGA	2 cut(s)	464, 884
Hpy166II	GTNNAC	1 cut(s)	618
Hpy188I	TCNGA	8 cut(s)	81, 99, 299, 331, 390, 861, 928, 1078
Hpy8I	GTNNAC	1 cut(s)	618
Hpy99I	CGWCG	2 cut(s)	15, 694
HpyAV	CCTTC	5 cut(s)	30, 160, 395, 439, 443
HpyCH4III	ACNGT	3 cut(s)	85, 430, 883
HpyCH4IV	ACGT	1 cut(s)	620
HpyCH4V	TGCA	4 cut(s)	88, 141, 532, 1098
HpyF10VI	GCNNNNNNNGC	4 cut(s)	529, 578, 590, 686
HpyF3I	CTNAG	3 cut(s)	78, 389, 933
HpySE526I	ACGT	1 cut(s)	620
Hsp92II	CATG	8 cut(s)	45, 145, 320, 536, 647, 809, 1088, 1098
HspAI	GCGC	1 cut(s)	464
Kzo9I	GATC	3 cut(s)	499, 650, 1090
LmnI	GCTCC	1 cut(s)	363
Lsp1109I	GCAGC	2 cut(s)	342, 568
LweI	GCATC	2 cut(s)	474, 501
MaeI	CTAG	2 cut(s)	248, 654
MaeII	ACGT	1 cut(s)	620
MaeIII	GTNAC	3 cut(s)	111, 473, 763
MalI	GATC	3 cut(s)	501, 652, 1092
MboI	GATC	3 cut(s)	499, 650, 1090
MfeI	CAATTG	1 cut(s)	261
MflI	RGATCY	2 cut(s)	650, 1090
MhlI	GDGCHC	1 cut(s)	295
MluCI	AATT	9 cut(s)	261, 401, 456, 512, 792, 876, 904, 995, 1055
MlyI	GAGTC	6 cut(s)	51, 119, 188, 309, 938, 1090
MmeI	TCCRAC	2 cut(s)	232, 607
MseI	TTAA	3 cut(s)	305, 375, 950
MslI	CAYNNNNRTG	1 cut(s)	1016
MspA1I	CMGCKG	1 cut(s)	1108
MspI	CCGG	2 cut(s)	237, 911
MspR9I	CCNGG	4 cut(s)	237, 489, 504, 561
MunI	CAATTG	1 cut(s)	261
Mva1269I	GAATGC	1 cut(s)	343
MvaI	CCWGG	3 cut(s)	489, 504, 561
MvnI	CGCG	1 cut(s)	10
MwoI	GCNNNNNNNGC	4 cut(s)	529, 578, 590, 686
NciI	CCSGG	1 cut(s)	237
NdeII	GATC	3 cut(s)	499, 650, 1090
NlaIII	CATG	8 cut(s)	45, 145, 320, 536, 647, 809, 1088, 1098
NlaIV	GGNNCC	2 cut(s)	72, 508
NmuCI	GTSAC	2 cut(s)	111, 473
NruI	TCGCGA	1 cut(s)	10
NspI	RCATGY	1 cut(s)	647
OliI	CACNNNNGTG	1 cut(s)	1016
PaeR7I	CTCGAG	1 cut(s)	107
PagI	TCATGA	2 cut(s)	805, 1084
PcsI	WCGNNNNNNNCGW	1 cut(s)	295
PctI	GAATGC	1 cut(s)	343
PkrI	GCNGC	3 cut(s)	48, 357, 583
PleI	GAGTC	6 cut(s)	51, 118, 188, 308, 937, 1089
PpsI	GAGTC	6 cut(s)	51, 118, 188, 308, 937, 1089
PpuMI	RGGWCCY	1 cut(s)	224
Psp5II	RGGWCCY	1 cut(s)	224
Psp6I	CCWGG	3 cut(s)	487, 502, 559
PspFI	CCCAGC	1 cut(s)	479
PspGI	CCWGG	3 cut(s)	487, 502, 559
PspN4I	GGNNCC	2 cut(s)	72, 508
PspPI	GGNCC	4 cut(s)	51, 70, 224, 563
PspPPI	RGGWCCY	1 cut(s)	224
PsuI	RGATCY	2 cut(s)	650, 1090
PvuII	CAGCTG	1 cut(s)	1108
RruI	TCGCGA	1 cut(s)	10
RsaI	GTAC	1 cut(s)	826
RsaNI	GTAC	1 cut(s)	825
RseI	CAYNNNNRTG	1 cut(s)	1016
SaqAI	TTAA	3 cut(s)	305, 375, 950
SatI	GCNGC	3 cut(s)	47, 356, 582
Sau3AI	GATC	3 cut(s)	499, 650, 1090
Sau96I	GGNCC	4 cut(s)	51, 70, 224, 563
SchI	GAGTC	6 cut(s)	51, 119, 188, 309, 938, 1090
ScrFI	CCNGG	4 cut(s)	237, 489, 504, 561
SduI	GDGCHC	1 cut(s)	295
SfaNI	GCATC	2 cut(s)	474, 501
Sfr274I	CTCGAG	1 cut(s)	107
SinI	GGWCC	3 cut(s)	51, 70, 224
SlaI	CTCGAG	1 cut(s)	107
SmiMI	CAYNNNNRTG	1 cut(s)	1016
SmlI	CTYRAG	2 cut(s)	107, 938
SmoI	CTYRAG	2 cut(s)	107, 938
Sse9I	AATT	9 cut(s)	261, 401, 456, 512, 792, 876, 904, 995, 1055
SsiI	CCGC	7 cut(s)	29, 46, 49, 180, 209, 570, 820
SspI	AATATT	2 cut(s)	373, 702
SspMI	CTAG	2 cut(s)	248, 654
StyD4I	CCNGG	4 cut(s)	235, 487, 502, 559
TaaI	ACNGT	3 cut(s)	85, 430, 883
TaiI	ACGT	1 cut(s)	623
TaqI	TCGA	2 cut(s)	108, 273
TaqII	GACCGA	1 cut(s)	206
TasI	AATT	9 cut(s)	261, 401, 456, 512, 792, 876, 904, 995, 1055
TauI	GCSGC	1 cut(s)	49
Tru1I	TTAA	3 cut(s)	305, 375, 950
Tru9I	TTAA	3 cut(s)	305, 375, 950
TscAI	CASTG	4 cut(s)	502, 613, 888, 1023
TseFI	GTSAC	2 cut(s)	111, 473
TseI	GCWGC	2 cut(s)	355, 581
Tsp45I	GTSAC	2 cut(s)	111, 473
TspDTI	ATGAA	5 cut(s)	423, 549, 794, 822, 1101
TspGWI	ACGGA	1 cut(s)	109
TspRI	CASTG	4 cut(s)	502, 613, 888, 1023
VpaK11BI	GGWCC	3 cut(s)	51, 70, 224
XapI	RAATTY	3 cut(s)	401, 904, 1055
XbaI	TCTAGA	1 cut(s)	653
XceI	RCATGY	1 cut(s)	647
XhoI	CTCGAG	1 cut(s)	107
XspI	CTAG	2 cut(s)	248, 654

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.