Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005454.1

Orthogroup ID

OG0015451

Physical Location & Seq

Genomic Coordinates Reverse (-)

72198 .. 75224

Gene Structure 3027 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005454.1_g000021.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1101 bp

atgctagcacgccgacttccgtctacggcggctgctttctcacgccggtgggcgggactgccgaacttgggccgtactccgtcgtctctgcaatcactctccgttttccctaataaaattaccctgattgccttctgttccaccgcagcgcaaatgtccgcagaacacaccgactcaatcccccaggcctcgtcaaaacaaggtgctcttaaaccgggtttatacttggtcggaactccgattggaaatcttgaagatatcaccttccgggctctccgtgtcctgaaatcagcccatgtgatactttcagaggacactaggcactcagggaagttgctccatcactacaacatcaaaactcctcttctgagctatcacaagttcaatgaatcccagagggaacagacggtgttaatgaggttgaaggaaggtgagatcgttgcgcttataagcgatgctgggatgccaggcattagtgatcctggtacggaactggcaaaactctgtgccaatcaaaatattcctgttattcctatacctggaccgtctgcttttgtggctgctctctctgcttcaggcctgtctactgatgagtttacttttgttggattcctctctaaacattctggaactagaaaagagagactaacagtttctgcaagtgaggcaacaacacagatattttatgttcctccccacaagcttcttcagtttcttgaagagacttcttcacttttcggtgttacaagacaatgcgtaatagctcgtgaactgacaaaaattcatgaagagttttggcggggtacattgggggaagcagaacagtggtttacaactcaccagccaagaggtgaaattacagtattgattgaaggaaaggaagatattccggttgaaactccatcagaatctcagcttgagaatgagttgagagatttgatctccaatgggcatagtctttctacggctgtcaaattagtagctgatggaacatcggtgagaaggaaaacgatatattcaattgcattgagaaaattcgggaagcaacaacttgtttcagagagtgattcttcagatccatcaaagccacatcgagagtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000154 GO:0000451 GO:0000453 GO:0001510 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0010467 GO:0016070 GO:0016072 GO:0022613 GO:0031167 GO:0032259 GO:0034470 GO:0034641 GO:0034660 GO:0042254 GO:0043170 GO:0043412 GO:0043414 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0046483 GO:0071704 GO:0071840 GO:0090304 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TP_methylase

Protein Analysis

366

Amino Acids

40.16

Weight (kDa)

8.36

Isoelectric Point (pI)

46.04

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015451)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G45110
fragaria_vesca	FvH4_2g39240
malus_domestica	MD08G1024000.v1.1 MD15G1021600.v1.1
prunus_persica	Prupe.1G373400_v2.0.a1
pyrus_communis	pycom15g01790
rosa_chinensis	RchiOBHm_Chr6g0301771
rosa_laevigata	RLG00000011223
rosa_multiflora	Rmu_sc0005454.1_g000021
rosa_roxburghii	Rroxscaffold_7G00166420
rosa_rugosa	Rorug06G0309500
rosa_samantha	Rh6AG421400 Rh6BG428200 Rh6CG434700 Rh6DG421600
rosa_wichuraiana	Rw6G036480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	449
AccI	GTMKAC	2 cut(s)	23, 584
AciI	CCGC	5 cut(s)	29, 53, 144, 159, 799
AclWI	GGATC	2 cut(s)	473, 1070
AcsI	RAATTY	2 cut(s)	780, 1034
AcuI	CTGAAG	3 cut(s)	558, 692, 1056
AfaI	GTAC	3 cut(s)	76, 487, 805
AfiI	CCNNNNNNNGG	3 cut(s)	52, 68, 539
AgsI	TTSAA	7 cut(s)	254, 385, 424, 719, 872, 896, 1020
AjnI	CCWGG	4 cut(s)	183, 466, 481, 538
AleI	CACNNNNGTG	1 cut(s)	46
AluBI	AGCT	5 cut(s)	372, 703, 764, 916, 983
AluI	AGCT	5 cut(s)	372, 703, 764, 916, 983
Alw21I	GWGCWC	1 cut(s)	208
Alw26I	GTCTC	3 cut(s)	90, 637, 716
AlwI	GGATC	2 cut(s)	473, 1070
AlwNI	CAGNNNCTG	1 cut(s)	656
AoxI	GGCC	3 cut(s)	70, 186, 577
ApeKI	GCWGC	3 cut(s)	32, 146, 560
ApoI	RAATTY	2 cut(s)	780, 1034
Asp700I	GAANNNNTTC	1 cut(s)	885
AspLEI	GCGC	2 cut(s)	151, 445
AspS9I	GGNCC	2 cut(s)	70, 542
AsuC2I	CCSGG	2 cut(s)	216, 269
AsuHPI	GGTGA	5 cut(s)	253, 443, 830, 863, 1009
AsuNHI	GCTAGC	1 cut(s)	4
AvaII	GGWCC	1 cut(s)	542
BanII	GRGCYC	1 cut(s)	274
BauI	CACGAG	1 cut(s)	765
Bbv12I	GWGCWC	1 cut(s)	208
BbvI	GCAGC	3 cut(s)	19, 158, 547
BccI	CCATC	4 cut(s)	348, 910, 980, 1087
BceAI	ACGGC	3 cut(s)	42, 57, 981
BciT130I	CCWGG	4 cut(s)	185, 468, 483, 540
BcnI	CCSGG	2 cut(s)	216, 269
BcoDI	GTCTC	3 cut(s)	90, 637, 716
BfaI	CTAG	3 cut(s)	5, 318, 633
BisI	GCNGC	4 cut(s)	30, 33, 147, 561
BlsI	GCNGC	4 cut(s)	31, 34, 148, 562
Bme1390I	CCNGG	6 cut(s)	185, 216, 269, 468, 483, 540
Bme18I	GGWCC	1 cut(s)	542
BmgT120I	GGNCC	2 cut(s)	70, 542
BmrFI	CCNGG	6 cut(s)	185, 216, 269, 468, 483, 540
BmsI	GCATC	2 cut(s)	445, 453
BmtI	GCTAGC	1 cut(s)	8
BoxI	GACNNNNGTC	1 cut(s)	19
BpuEI	CTTGAG	1 cut(s)	938
BpuMI	CCSGG	2 cut(s)	216, 269
BsaJI	CCNNGG	1 cut(s)	183
BsaWI	WCCGGW	1 cut(s)	889
Bsc4I	CCNNNNNNNGG	3 cut(s)	52, 68, 539
Bse118I	RCCGGY	1 cut(s)	45
Bse1I	ACTGG	1 cut(s)	498
BseBI	CCWGG	4 cut(s)	185, 468, 483, 540
BseDI	CCNNGG	1 cut(s)	183
BseGI	GGATG	1 cut(s)	468
BseLI	CCNNNNNNNGG	3 cut(s)	52, 68, 539
BseMII	CTCAG	3 cut(s)	339, 359, 926
BseNI	ACTGG	1 cut(s)	498
BseRI	GAGGAG	1 cut(s)	351
BseXI	GCAGC	3 cut(s)	19, 158, 547
BseYI	CCCAGC	1 cut(s)	458
BshFI	GGCC	3 cut(s)	72, 188, 579
BsiHKAI	GWGCWC	1 cut(s)	208
BsiSI	CCGG	4 cut(s)	46, 215, 268, 890
BslFI	GGGAC	1 cut(s)	69
BslI	CCNNNNNNNGG	3 cut(s)	52, 68, 539
BsmAI	GTCTC	3 cut(s)	90, 637, 716
BsmBI	CGTCTC	1 cut(s)	90
BsmFI	GGGAC	1 cut(s)	69
BsnI	GGCC	3 cut(s)	72, 188, 579
Bsp1286I	GDGCHC	2 cut(s)	208, 274
Bsp143I	GATC	4 cut(s)	435, 478, 939, 1075
BspACI	CCGC	5 cut(s)	29, 53, 144, 159, 799
BspANI	GGCC	3 cut(s)	72, 188, 579
BspCNI	CTCAG	3 cut(s)	338, 360, 925
BspHI	TCATGA	1 cut(s)	784
BspOI	GCTAGC	1 cut(s)	8
BspPI	GGATC	2 cut(s)	473, 1070
BsrFI	RCCGGY	1 cut(s)	45
BsrI	ACTGG	1 cut(s)	498
BssAI	RCCGGY	1 cut(s)	45
BssECI	CCNNGG	1 cut(s)	183
BssMI	GATC	4 cut(s)	435, 478, 939, 1075
BssSI	CACGAG	1 cut(s)	765
Bst2BI	CACGAG	1 cut(s)	765
Bst2UI	CCWGG	4 cut(s)	185, 468, 483, 540
Bst4CI	ACNGT	5 cut(s)	409, 546, 652, 825, 862
Bst6I	CTCTTC	3 cut(s)	369, 714, 783
BstC8I	GCNNGC	2 cut(s)	6, 10
BstDEI	CTNAG	3 cut(s)	325, 368, 912
BstF5I	GGATG	1 cut(s)	468
BstHHI	GCGC	2 cut(s)	151, 445
BstKTI	GATC	4 cut(s)	438, 481, 942, 1078
BstMAI	GTCTC	3 cut(s)	90, 637, 716
BstMBI	GATC	4 cut(s)	435, 478, 939, 1075
BstMWI	GCNNNNNNNGC	3 cut(s)	557, 569, 665
BstNI	CCWGG	4 cut(s)	185, 468, 483, 540
BstPAI	GACNNNNGTC	1 cut(s)	19
BstSCI	CCNGG	6 cut(s)	183, 214, 267, 466, 481, 538
BstV1I	GCAGC	3 cut(s)	19, 158, 547
BstX2I	RGATCY	1 cut(s)	1075
BstYI	RGATCY	1 cut(s)	1075
BsuRI	GGCC	3 cut(s)	72, 188, 579
BtgZI	GCGATG	1 cut(s)	468
BtsCI	GGATG	1 cut(s)	468
BtsIMutI	CAGTG	1 cut(s)	830
Cac8I	GCNNGC	2 cut(s)	6, 10
CaiI	CAGNNNCTG	1 cut(s)	656
CciI	TCATGA	1 cut(s)	784
CfoI	GCGC	2 cut(s)	151, 445
Cfr10I	RCCGGY	1 cut(s)	45
Cfr13I	GGNCC	2 cut(s)	70, 542
Csp6I	GTAC	3 cut(s)	75, 486, 804
CviAII	CATG	2 cut(s)	296, 785
CviQI	GTAC	3 cut(s)	75, 486, 804
DdeI	CTNAG	3 cut(s)	325, 368, 912
DpnI	GATC	4 cut(s)	437, 480, 941, 1077
DpnII	GATC	4 cut(s)	435, 478, 939, 1075
Eam1104I	CTCTTC	3 cut(s)	369, 714, 783
EarI	CTCTTC	3 cut(s)	369, 714, 783
Eco147I	AGGCCT	2 cut(s)	188, 579
Eco24I	GRGCYC	1 cut(s)	274
Eco32I	GATATC	1 cut(s)	259
Eco47I	GGWCC	1 cut(s)	542
Eco57I	CTGAAG	3 cut(s)	558, 692, 1056
EcoRII	CCWGG	4 cut(s)	183, 466, 481, 538
EcoRV	GATATC	1 cut(s)	259
EcoT38I	GRGCYC	1 cut(s)	274
Esp3I	CGTCTC	1 cut(s)	90
FaeI	CATG	2 cut(s)	299, 788
FaiI	YATR	8 cut(s)	223, 297, 449, 536, 687, 786, 954, 1015
FalI	AAGNNNNNCTT	2 cut(s)	192, 224
FaqI	GGGAC	1 cut(s)	69
FatI	CATG	2 cut(s)	295, 784
FauI	CCCGC	2 cut(s)	46, 792
FblI	GTMKAC	2 cut(s)	23, 584
Fnu4HI	GCNGC	4 cut(s)	30, 33, 147, 561
FokI	GGATG	1 cut(s)	475
FriOI	GRGCYC	1 cut(s)	274
Fsp4HI	GCNGC	4 cut(s)	30, 33, 147, 561
FspBI	CTAG	3 cut(s)	5, 318, 633
GlaI	GCGC	2 cut(s)	150, 444
GluI	GCNGC	4 cut(s)	30, 33, 147, 561
GsaI	CCCAGC	1 cut(s)	462
HaeIII	GGCC	3 cut(s)	72, 188, 579
HapII	CCGG	4 cut(s)	46, 215, 268, 890
HhaI	GCGC	2 cut(s)	151, 445
Hin1II	CATG	2 cut(s)	299, 788
Hin6I	GCGC	2 cut(s)	149, 443
HinP1I	GCGC	2 cut(s)	149, 443
HindIII	AAGCTT	1 cut(s)	701
HinfI	GANTC	5 cut(s)	173, 389, 609, 908, 1067
HpaII	CCGG	4 cut(s)	46, 215, 268, 890
HphI	GGTGA	5 cut(s)	253, 443, 830, 863, 1009
Hpy166II	GTNNAC	5 cut(s)	24, 585, 597, 770, 831
Hpy188I	TCNGA	7 cut(s)	233, 240, 310, 369, 907, 1060, 1075
Hpy188III	TCNNGA	8 cut(s)	251, 283, 627, 716, 767, 785, 1039, 1094
Hpy8I	GTNNAC	5 cut(s)	24, 585, 597, 770, 831
Hpy99I	CGWCG	1 cut(s)	85
HpyAV	CCTTC	6 cut(s)	142, 274, 418, 422, 866, 996
HpyCH4III	ACNGT	5 cut(s)	409, 546, 652, 825, 862
HpyCH4V	TGCA	3 cut(s)	91, 659, 1025
HpyF10VI	GCNNNNNNNGC	3 cut(s)	557, 569, 665
HpyF3I	CTNAG	3 cut(s)	325, 368, 912
Hsp92II	CATG	2 cut(s)	299, 788
HspAI	GCGC	2 cut(s)	149, 443
Kzo9I	GATC	4 cut(s)	435, 478, 939, 1075
LmnI	GCTCC	1 cut(s)	342
Lsp1109I	GCAGC	3 cut(s)	19, 158, 547
LweI	GCATC	2 cut(s)	445, 453
MaeI	CTAG	3 cut(s)	5, 318, 633
MaeIII	GTNAC	1 cut(s)	742
MalI	GATC	4 cut(s)	437, 480, 941, 1077
MboI	GATC	4 cut(s)	435, 478, 939, 1075
MboII	GAAGA	8 cut(s)	266, 356, 698, 720, 731, 800, 893, 1062
MfeI	CAATTG	1 cut(s)	1020
MflI	RGATCY	1 cut(s)	1075
MhlI	GDGCHC	2 cut(s)	208, 274
MluCI	AATT	6 cut(s)	117, 780, 855, 974, 1020, 1034
MlyI	GAGTC	1 cut(s)	167
MmeI	TCCRAC	2 cut(s)	211, 586
MnlI	CCTC	9 cut(s)	199, 304, 372, 390, 411, 623, 658, 702, 842
MroXI	GAANNNNTTC	1 cut(s)	885
MseI	TTAA	2 cut(s)	210, 413
MslI	CAYNNNNRTG	1 cut(s)	46
MspI	CCGG	4 cut(s)	46, 215, 268, 890
MspR9I	CCNGG	6 cut(s)	185, 216, 269, 468, 483, 540
MunI	CAATTG	1 cut(s)	1020
MvaI	CCWGG	4 cut(s)	185, 468, 483, 540
MwoI	GCNNNNNNNGC	3 cut(s)	557, 569, 665
NciI	CCSGG	2 cut(s)	216, 269
NdeII	GATC	4 cut(s)	435, 478, 939, 1075
NheI	GCTAGC	1 cut(s)	4
NlaIII	CATG	2 cut(s)	299, 788
OliI	CACNNNNGTG	1 cut(s)	46
PagI	TCATGA	1 cut(s)	784
PceI	AGGCCT	2 cut(s)	188, 579
PdmI	GAANNNNTTC	1 cut(s)	885
PfeI	GAWTC	4 cut(s)	389, 609, 908, 1067
PkrI	GCNGC	4 cut(s)	31, 34, 148, 562
PleI	GAGTC	1 cut(s)	167
PpsI	GAGTC	1 cut(s)	167
PshAI	GACNNNNGTC	1 cut(s)	19
PsiI	TTATAA	1 cut(s)	449
Psp6I	CCWGG	4 cut(s)	183, 466, 481, 538
PspFI	CCCAGC	1 cut(s)	458
PspGI	CCWGG	4 cut(s)	183, 466, 481, 538
PspPI	GGNCC	2 cut(s)	70, 542
PstNI	CAGNNNCTG	1 cut(s)	656
PsuI	RGATCY	1 cut(s)	1075
RsaI	GTAC	3 cut(s)	76, 487, 805
RsaNI	GTAC	3 cut(s)	75, 486, 804
RseI	CAYNNNNRTG	1 cut(s)	46
SaqAI	TTAA	2 cut(s)	210, 413
SatI	GCNGC	4 cut(s)	30, 33, 147, 561
Sau3AI	GATC	4 cut(s)	435, 478, 939, 1075
Sau96I	GGNCC	2 cut(s)	70, 542
SchI	GAGTC	1 cut(s)	167
ScrFI	CCNGG	6 cut(s)	185, 216, 269, 468, 483, 540
SduI	GDGCHC	2 cut(s)	208, 274
SfaNI	GCATC	2 cut(s)	445, 453
SgrAI	CRCCGGYG	1 cut(s)	45
SinI	GGWCC	1 cut(s)	542
SmiMI	CAYNNNNRTG	1 cut(s)	46
SmlI	CTYRAG	1 cut(s)	917
SmoI	CTYRAG	1 cut(s)	917
Sse9I	AATT	6 cut(s)	117, 780, 855, 974, 1020, 1034
SseBI	AGGCCT	2 cut(s)	188, 579
SsiI	CCGC	5 cut(s)	29, 53, 144, 159, 799
SspI	AATATT	1 cut(s)	520
SspMI	CTAG	3 cut(s)	5, 318, 633
StuI	AGGCCT	2 cut(s)	188, 579
StyD4I	CCNGG	6 cut(s)	183, 214, 267, 466, 481, 538
TaaI	ACNGT	5 cut(s)	409, 546, 652, 825, 862
TaqI	TCGA	1 cut(s)	1093
TasI	AATT	6 cut(s)	117, 780, 855, 974, 1020, 1034
TauI	GCSGC	1 cut(s)	32
TfiI	GAWTC	4 cut(s)	389, 609, 908, 1067
Tru1I	TTAA	2 cut(s)	210, 413
Tru9I	TTAA	2 cut(s)	210, 413
TscAI	CASTG	1 cut(s)	830
TseI	GCWGC	3 cut(s)	32, 146, 560
TspDTI	ATGAA	3 cut(s)	402, 773, 801
TspGWI	ACGGA	5 cut(s)	9, 69, 91, 266, 503
TspRI	CASTG	1 cut(s)	830
VpaK11BI	GGWCC	1 cut(s)	542
XapI	RAATTY	2 cut(s)	780, 1034
XmiI	GTMKAC	2 cut(s)	23, 584
XmnI	GAANNNNTTC	1 cut(s)	885
XspI	CTAG	3 cut(s)	5, 318, 633

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.