Prupe.1G408700_v2.0.a1

leucine-rich repeat extensin-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0018919
Physical Location & Seq
Forward (+)
35781922 .. 35782803
882 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G408700.1

Sequence Viewer

Length: 546 bp
ATGGGTAGTTTCAAAGCTTTGGCATTCATGGAAGGAAAATGGTTTCCTTGGTTCTTGAAGGCAGGGCTCATTGGTTTGGTCATGTTTGCTGGGTTGACATATGAGGATCAAGTGGGAGAGGCTGAGACTGGTTTACTATGTATCAGTGAGTGCACAACATGTCCAGTCATATGTTCAACTCCTCCCCCTCCTCAACTTGAGTCTTCTTCACCACCACCATCACCGCCACCAGTGCACCCCTCGCCTTCTCAATCTTACTACAGCTCTCCTCCGCCCTCACCGCCGCCGCCTCCTCCCTCACCACCAAAACAATCACCATCACCTTCATCATATTCGAAAGGCGCTCCTCCCCCGCCATCTTTTGTGTACTTCTTCAACATGCCTCCCTCAGGTCCAGTGCCAACAACAACAACAACAACGACAGGAGTGCTGCATAACAATTCCTATCCCTACTACTACTTTTACGCCTCAGAGGCTTCTTCTCTCTCTGCTCATGCCTTCTTCTTATTTGTCTTCTTAGTTCAGCTTGTGTTTTCTTTTTGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

182

Amino Acids

19.55

Weight (kDa)

5.44

Isoelectric Point (pI)

91.71

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018919)

Species Orthologous Gene IDs
prunus_persica Prupe.1G408700_v2.0.a1
pyrus_communis pycom15g05240
rosa_chinensis RchiOBHm_Chr6g0311291
rosa_laevigata RLG00000010421
rosa_rugosa Rorug06G0387000
rosa_samantha Rh6AG501800 Rh6BG512500 Rh6CG518200
rosa_wichuraiana Rw6G043700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 6 cut(s) 224, 272, 281, 284, 287, 353
AclWI GGATC 1 cut(s) 114
AfaI GTAC 1 cut(s) 368
AfiI CCNNNNNNNGG 1 cut(s) 389
AflIII ACRYGT 1 cut(s) 158
AgsI TTSAA 4 cut(s) 13, 58, 177, 376
AluBI AGCT 3 cut(s) 17, 264, 526
AluI AGCT 3 cut(s) 17, 264, 526
Alw21I GWGCWC 2 cut(s) 155, 237
Alw26I GTCTC 1 cut(s) 119
Alw44I GTGCAC 2 cut(s) 151, 233
AlwI GGATC 1 cut(s) 114
ApaLI GTGCAC 2 cut(s) 151, 233
ApeKI GCWGC 1 cut(s) 430
AspLEI GCGC 1 cut(s) 344
AspS9I GGNCC 1 cut(s) 392
AsuHPI GGTGA 6 cut(s) 201, 213, 270, 291, 306, 312
AsuII TTCGAA 1 cut(s) 335
AvaII GGWCC 1 cut(s) 392
AxyI CCTNAGG 1 cut(s) 388
BaeGI GKGCMC 2 cut(s) 155, 237
BanII GRGCYC 1 cut(s) 69
BbsI GAAGAC 2 cut(s) 195, 505
Bbv12I GWGCWC 2 cut(s) 155, 237
BbvI GCAGC 1 cut(s) 417
BccI CCATC 3 cut(s) 226, 325, 364
BcgI CGANNNNNNTGC 2 cut(s) 409, 443
BcoDI GTCTC 1 cut(s) 119
BfmI CTRYAG 1 cut(s) 259
BfoI RGCGCY 1 cut(s) 345
BglI GCCNNNNNGGC 1 cut(s) 473
BisI GCNGC 3 cut(s) 284, 287, 431
BlsI GCNGC 3 cut(s) 285, 288, 432
Bme18I GGWCC 1 cut(s) 392
BmgT120I GGNCC 1 cut(s) 392
BpiI GAAGAC 2 cut(s) 195, 505
Bpu14I TTCGAA 1 cut(s) 335
BpuEI CTTGAG 1 cut(s) 218
BsaJI CCNNGG 1 cut(s) 47
Bsc4I CCNNNNNNNGG 1 cut(s) 389
Bse1I ACTGG 4 cut(s) 133, 164, 230, 395
Bse21I CCTNAGG 1 cut(s) 388
BseDI CCNNGG 1 cut(s) 47
BseLI CCNNNNNNNGG 1 cut(s) 389
BseMII CTCAG 3 cut(s) 114, 402, 483
BseNI ACTGG 4 cut(s) 133, 164, 230, 395
BseRI GAGGAG 5 cut(s) 171, 180, 258, 282, 336
BseSI GKGCMC 2 cut(s) 155, 237
BseXI GCAGC 1 cut(s) 417
BseYI CCCAGC 1 cut(s) 89
BsiHKAI GWGCWC 2 cut(s) 155, 237
BslI CCNNNNNNNGG 1 cut(s) 389
BsmAI GTCTC 1 cut(s) 119
BsmI GAATGC 1 cut(s) 23
Bsp119I TTCGAA 1 cut(s) 335
Bsp1286I GDGCHC 3 cut(s) 69, 155, 237
Bsp143I GATC 1 cut(s) 106
BspACI CCGC 6 cut(s) 224, 272, 281, 284, 287, 353
BspCNI CTCAG 3 cut(s) 115, 401, 482
BspPI GGATC 1 cut(s) 114
BspT104I TTCGAA 1 cut(s) 335
BsrI ACTGG 4 cut(s) 133, 164, 230, 395
BssECI CCNNGG 1 cut(s) 47
BssMI GATC 1 cut(s) 106
BssT1I CCWWGG 1 cut(s) 47
BstBI TTCGAA 1 cut(s) 335
BstDEI CTNAG 4 cut(s) 123, 388, 469, 517
BstENI CCTNNNNNAGG 1 cut(s) 387
BstH2I RGCGCY 1 cut(s) 345
BstHHI GCGC 1 cut(s) 344
BstKTI GATC 1 cut(s) 109
BstMAI GTCTC 1 cut(s) 119
BstMBI GATC 1 cut(s) 106
BstMWI GCNNNNNNNGC 4 cut(s) 232, 241, 280, 473
BstNSI RCATGY 2 cut(s) 162, 382
BstSFI CTRYAG 1 cut(s) 259
BstSLI GKGCMC 2 cut(s) 155, 237
BstV1I GCAGC 1 cut(s) 417
BstV2I GAAGAC 2 cut(s) 195, 505
Bsu36I CCTNAGG 1 cut(s) 388
BtsIMutI CAGTG 3 cut(s) 151, 237, 402
CfoI GCGC 1 cut(s) 344
Cfr13I GGNCC 1 cut(s) 392
Csp6I GTAC 1 cut(s) 367
CviAII CATG 5 cut(s) 28, 82, 159, 379, 494
CviJI RGCY 6 cut(s) 17, 67, 122, 264, 476, 526
CviKI_1 RGCY 6 cut(s) 17, 67, 122, 264, 476, 526
CviQI GTAC 1 cut(s) 367
DdeI CTNAG 4 cut(s) 123, 388, 469, 517
DpnI GATC 1 cut(s) 108
DpnII GATC 1 cut(s) 106
EciI GGCGGA 1 cut(s) 261
Eco130I CCWWGG 1 cut(s) 47
Eco24I GRGCYC 1 cut(s) 69
Eco47I GGWCC 1 cut(s) 392
Eco81I CCTNAGG 1 cut(s) 388
EcoNI CCTNNNNNAGG 1 cut(s) 387
EcoT14I CCWWGG 1 cut(s) 47
EcoT38I GRGCYC 1 cut(s) 69
ErhI CCWWGG 1 cut(s) 47
FaeI CATG 5 cut(s) 31, 85, 162, 382, 497
FatI CATG 5 cut(s) 27, 81, 158, 378, 493
FauI CCCGC 1 cut(s) 360
FauNDI CATATG 2 cut(s) 100, 170
Fnu4HI GCNGC 3 cut(s) 284, 287, 431
FriOI GRGCYC 1 cut(s) 69
Fsp4HI GCNGC 3 cut(s) 284, 287, 431
GlaI GCGC 1 cut(s) 343
GluI GCNGC 3 cut(s) 284, 287, 431
GsaI CCCAGC 1 cut(s) 93
HaeII RGCGCY 1 cut(s) 345
HhaI GCGC 1 cut(s) 344
Hin1II CATG 5 cut(s) 31, 85, 162, 382, 497
Hin6I GCGC 1 cut(s) 342
HinP1I GCGC 1 cut(s) 342
HincII GTYRAC 1 cut(s) 96
HindII GTYRAC 1 cut(s) 96
HindIII AAGCTT 1 cut(s) 15
HinfI GANTC 1 cut(s) 200
HphI GGTGA 6 cut(s) 201, 213, 270, 291, 306, 312
Hpy166II GTNNAC 5 cut(s) 96, 134, 153, 235, 367
Hpy188I TCNGA 1 cut(s) 472
Hpy188III TCNNGA 1 cut(s) 55
Hpy8I GTNNAC 5 cut(s) 96, 134, 153, 235, 367
HpyAV CCTTC 5 cut(s) 26, 52, 255, 333, 508
HpyCH4V TGCA 3 cut(s) 153, 235, 433
HpyF10VI GCNNNNNNNGC 4 cut(s) 232, 241, 280, 473
HpyF3I CTNAG 4 cut(s) 123, 388, 469, 517
Hsp92II CATG 5 cut(s) 31, 85, 162, 382, 497
HspAI GCGC 1 cut(s) 342
Kzo9I GATC 1 cut(s) 106
LmnI GCTCC 1 cut(s) 349
LpnPI CCDG 8 cut(s) 48, 75, 114, 177, 243, 375, 408, 408
Lsp1109I GCAGC 1 cut(s) 417
MalI GATC 1 cut(s) 108
MboI GATC 1 cut(s) 106
MboII GAAGA 6 cut(s) 195, 198, 364, 471, 493, 505
MhlI GDGCHC 3 cut(s) 69, 155, 237
MluCI AATT 1 cut(s) 439
MlyI GAGTC 1 cut(s) 209
Mva1269I GAATGC 1 cut(s) 23
MwoI GCNNNNNNNGC 4 cut(s) 232, 241, 280, 473
NdeI CATATG 2 cut(s) 100, 170
NdeII GATC 1 cut(s) 106
NlaIII CATG 5 cut(s) 31, 85, 162, 382, 497
NspI RCATGY 2 cut(s) 162, 382
NspV TTCGAA 1 cut(s) 335
PciI ACATGT 1 cut(s) 158
PctI GAATGC 1 cut(s) 23
PkrI GCNGC 3 cut(s) 285, 288, 432
PleI GAGTC 1 cut(s) 208
PpsI GAGTC 1 cut(s) 208
PscI ACATGT 1 cut(s) 158
PspFI CCCAGC 1 cut(s) 89
PspPI GGNCC 1 cut(s) 392
RsaI GTAC 1 cut(s) 368
RsaNI GTAC 1 cut(s) 367
SatI GCNGC 3 cut(s) 284, 287, 431
Sau3AI GATC 1 cut(s) 106
Sau96I GGNCC 1 cut(s) 392
SchI GAGTC 1 cut(s) 209
SduI GDGCHC 3 cut(s) 69, 155, 237
SetI ASST 5 cut(s) 19, 266, 325, 394, 528
SfcI CTRYAG 1 cut(s) 259
SfuI TTCGAA 1 cut(s) 335
SinI GGWCC 1 cut(s) 392
SmlI CTYRAG 1 cut(s) 197
SmoI CTYRAG 1 cut(s) 197
Sse9I AATT 1 cut(s) 439
SsiI CCGC 6 cut(s) 224, 272, 281, 284, 287, 353
StyI CCWWGG 1 cut(s) 47
TaqI TCGA 1 cut(s) 335
TasI AATT 1 cut(s) 439
TatI WGTACW 1 cut(s) 366
TauI GCSGC 2 cut(s) 286, 289
TscAI CASTG 3 cut(s) 151, 237, 402
TseI GCWGC 1 cut(s) 430
TspDTI ATGAA 2 cut(s) 16, 315
TspRI CASTG 3 cut(s) 151, 237, 402
VneI GTGCAC 2 cut(s) 151, 233
VpaK11BI GGWCC 1 cut(s) 392
XagI CCTNNNNNAGG 1 cut(s) 387
XceI RCATGY 2 cut(s) 162, 382
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.