pycom15g05240

leucine-rich repeat extensin-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
OG0018919
Physical Location & Seq
Forward (+)
3129018 .. 3129593
576 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom15g05240.1

Sequence Viewer

Length: 576 bp
ATGAGTAACTCCAAAGATCTACTATCCATGGCAAGGAAATGGATTCCCCGGTCCTTCAAGGTGGCGGTTTTCGGGCTGATCATGTTTGCCGGGTTGACATATGAAGATCAAACGGTGGATCTTGAGACTGGTTTACTATGCATCAGTGAATGCGGTACATGTCCAGTCCTATGTTCACCACCTCCTTCTCCTGAACTGGAGCCTTCAGGTCCGCTGCCATCACCACCACAATCACCGCCACCAGTGCACCACTCTCCACCTCAATATTACTACATTTCTCCGCCGCCCTCACCACCGAAACAATCACCATCACCACCTTCCTCACCGCCAAAACAATCCCCGTCACCCCCATCATATTCTTCGAAAGACGCTCCTCCTCCTCCTCCTCGGTTTGTCTACTTCTACGACATGCCTCCTGCCGGTCCAGTGCCAACAGCAACAACAGGAACAGGAGTGGTGAACAACAATCCACTTCCTAACTACTTTTACACCTCCATGGCTTCTTCTCCTTCTTCTGTTCGTGTCTTGCTTTTGTTCATCTTGTTAGCTCATCATCTTGTGTTTTCTTTTTGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

192

Amino Acids

20.66

Weight (kDa)

6.88

Isoelectric Point (pI)

104.55

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0018919)

Species Orthologous Gene IDs
prunus_persica Prupe.1G408700_v2.0.a1
pyrus_communis pycom15g05240
rosa_chinensis RchiOBHm_Chr6g0311291
rosa_laevigata RLG00000010421
rosa_rugosa Rorug06G0387000
rosa_samantha Rh6AG501800 Rh6BG512500 Rh6CG518200
rosa_wichuraiana Rw6G043700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 396
AciI CCGC 7 cut(s) 65, 153, 212, 236, 281, 284, 326
AclWI GGATC 1 cut(s) 126
AcuI CTGAAG 1 cut(s) 189
AfaI GTAC 1 cut(s) 157
AfiI CCNNNNNNNGG 2 cut(s) 33, 419
AflIII ACRYGT 1 cut(s) 158
AgsI TTSAA 1 cut(s) 58
AluBI AGCT 1 cut(s) 548
AluI AGCT 1 cut(s) 548
Alw21I GWGCWC 1 cut(s) 249
Alw26I GTCTC 1 cut(s) 119
Alw44I GTGCAC 1 cut(s) 245
AlwI GGATC 1 cut(s) 126
ApaLI GTGCAC 1 cut(s) 245
ApeKI GCWGC 1 cut(s) 214
AspS9I GGNCC 3 cut(s) 51, 209, 422
AsuC2I CCSGG 2 cut(s) 49, 91
AsuHPI GGTGA 9 cut(s) 168, 213, 225, 282, 297, 303, 315, 336, 469
AsuII TTCGAA 1 cut(s) 362
AvaII GGWCC 3 cut(s) 51, 209, 422
BaeGI GKGCMC 1 cut(s) 249
Bbv12I GWGCWC 1 cut(s) 249
BbvI GCAGC 1 cut(s) 201
BccI CCATC 3 cut(s) 226, 316, 358
BclI TGATCA 1 cut(s) 78
BcnI CCSGG 2 cut(s) 49, 91
BcoDI GTCTC 1 cut(s) 119
BglII AGATCT 1 cut(s) 16
BisI GCNGC 2 cut(s) 215, 284
BlsI GCNGC 2 cut(s) 216, 285
Bme1390I CCNGG 2 cut(s) 49, 91
Bme18I GGWCC 3 cut(s) 51, 209, 422
BmgT120I GGNCC 3 cut(s) 51, 209, 422
BmiI GGNNCC 1 cut(s) 201
BmrFI CCNGG 2 cut(s) 49, 91
BmsI GCATC 1 cut(s) 150
BpmI CTGGAG 1 cut(s) 218
Bpu14I TTCGAA 1 cut(s) 362
BpuEI CTTGAG 1 cut(s) 143
BpuMI CCSGG 2 cut(s) 49, 91
BsaJI CCNNGG 4 cut(s) 27, 47, 386, 495
Bsc4I CCNNNNNNNGG 2 cut(s) 33, 419
Bse118I RCCGGY 1 cut(s) 419
Bse1I ACTGG 5 cut(s) 133, 164, 201, 242, 425
BseDI CCNNGG 4 cut(s) 27, 47, 386, 495
BseLI CCNNNNNNNGG 2 cut(s) 33, 419
BseNI ACTGG 5 cut(s) 133, 164, 201, 242, 425
BseRI GAGGAG 5 cut(s) 363, 366, 369, 372, 375
BseSI GKGCMC 1 cut(s) 249
BseXI GCAGC 1 cut(s) 201
BsiHKAI GWGCWC 1 cut(s) 249
BsiSI CCGG 3 cut(s) 49, 90, 420
BslI CCNNNNNNNGG 2 cut(s) 33, 419
BsmAI GTCTC 1 cut(s) 119
BsmI GAATGC 1 cut(s) 155
Bsp119I TTCGAA 1 cut(s) 362
Bsp1286I GDGCHC 1 cut(s) 249
Bsp143I GATC 4 cut(s) 16, 78, 106, 118
Bsp19I CCATGG 2 cut(s) 27, 495
BspACI CCGC 7 cut(s) 65, 153, 212, 236, 281, 284, 326
BspLI GGNNCC 1 cut(s) 201
BspPI GGATC 1 cut(s) 126
BspT104I TTCGAA 1 cut(s) 362
BsrFI RCCGGY 1 cut(s) 419
BsrI ACTGG 5 cut(s) 133, 164, 201, 242, 425
BssAI RCCGGY 1 cut(s) 419
BssECI CCNNGG 4 cut(s) 27, 47, 386, 495
BssMI GATC 4 cut(s) 16, 78, 106, 118
BssT1I CCWWGG 2 cut(s) 27, 495
Bst4CI ACNGT 1 cut(s) 115
BstBI TTCGAA 1 cut(s) 362
BstDSI CCRYGG 2 cut(s) 27, 495
BstKTI GATC 4 cut(s) 19, 81, 109, 121
BstMAI GTCTC 1 cut(s) 119
BstMBI GATC 4 cut(s) 16, 78, 106, 118
BstMWI GCNNNNNNNGC 1 cut(s) 244
BstNSI RCATGY 2 cut(s) 162, 412
BstSCI CCNGG 2 cut(s) 47, 89
BstSLI GKGCMC 1 cut(s) 249
BstV1I GCAGC 1 cut(s) 201
BstX2I RGATCY 2 cut(s) 16, 118
BstYI RGATCY 2 cut(s) 16, 118
BtgI CCRYGG 2 cut(s) 27, 495
BtsIMutI CAGTG 3 cut(s) 151, 249, 432
Cfr10I RCCGGY 1 cut(s) 419
Cfr13I GGNCC 3 cut(s) 51, 209, 422
CseI GACGC 1 cut(s) 377
Csp6I GTAC 1 cut(s) 156
CviAII CATG 5 cut(s) 28, 82, 159, 409, 496
CviJI RGCY 4 cut(s) 76, 202, 500, 548
CviKI_1 RGCY 4 cut(s) 76, 202, 500, 548
CviQI GTAC 1 cut(s) 156
DpnI GATC 4 cut(s) 18, 80, 108, 120
DpnII GATC 4 cut(s) 16, 78, 106, 118
EciI GGCGGA 1 cut(s) 270
Eco130I CCWWGG 2 cut(s) 27, 495
Eco47I GGWCC 3 cut(s) 51, 209, 422
Eco57I CTGAAG 1 cut(s) 189
EcoT14I CCWWGG 2 cut(s) 27, 495
EcoT22I ATGCAT 1 cut(s) 143
ErhI CCWWGG 2 cut(s) 27, 495
FaeI CATG 5 cut(s) 31, 85, 162, 412, 499
FatI CATG 5 cut(s) 27, 81, 158, 408, 495
FauNDI CATATG 1 cut(s) 100
FbaI TGATCA 1 cut(s) 78
FblI GTMKAC 1 cut(s) 396
Fnu4HI GCNGC 2 cut(s) 215, 284
Fsp4HI GCNGC 2 cut(s) 215, 284
GluI GCNGC 2 cut(s) 215, 284
GsuI CTGGAG 1 cut(s) 218
HapII CCGG 3 cut(s) 49, 90, 420
HgaI GACGC 1 cut(s) 377
Hin1II CATG 5 cut(s) 31, 85, 162, 412, 499
HincII GTYRAC 1 cut(s) 96
HindII GTYRAC 1 cut(s) 96
HinfI GANTC 1 cut(s) 43
HpaII CCGG 3 cut(s) 49, 90, 420
HphI GGTGA 9 cut(s) 168, 213, 225, 282, 297, 303, 315, 336, 469
Hpy166II GTNNAC 6 cut(s) 96, 134, 176, 247, 397, 460
Hpy188III TCNNGA 2 cut(s) 122, 191
Hpy8I GTNNAC 6 cut(s) 96, 134, 176, 247, 397, 460
HpyAV CCTTC 5 cut(s) 64, 195, 213, 327, 519
HpyCH4III ACNGT 1 cut(s) 115
HpyCH4V TGCA 2 cut(s) 141, 247
HpyF10VI GCNNNNNNNGC 1 cut(s) 244
Hsp92II CATG 5 cut(s) 31, 85, 162, 412, 499
Ksp22I TGATCA 1 cut(s) 78
Kzo9I GATC 4 cut(s) 16, 78, 106, 118
LmnI GCTCC 2 cut(s) 199, 376
Lsp1109I GCAGC 1 cut(s) 201
LweI GCATC 1 cut(s) 150
MaeIII GTNAC 2 cut(s) 5, 342
MalI GATC 4 cut(s) 18, 80, 108, 120
MboI GATC 4 cut(s) 16, 78, 106, 118
MboII GAAGA 4 cut(s) 116, 351, 495, 504
MflI RGATCY 2 cut(s) 16, 118
MhlI GDGCHC 1 cut(s) 249
Mph1103I ATGCAT 1 cut(s) 143
MslI CAYNNNNRTG 1 cut(s) 494
MspA1I CMGCKG 1 cut(s) 214
MspI CCGG 3 cut(s) 49, 90, 420
MspR9I CCNGG 2 cut(s) 49, 91
Mva1269I GAATGC 1 cut(s) 155
MwoI GCNNNNNNNGC 1 cut(s) 244
NciI CCSGG 2 cut(s) 49, 91
NcoI CCATGG 2 cut(s) 27, 495
NdeI CATATG 1 cut(s) 100
NdeII GATC 4 cut(s) 16, 78, 106, 118
NlaIII CATG 5 cut(s) 31, 85, 162, 412, 499
NlaIV GGNNCC 1 cut(s) 201
NmuCI GTSAC 1 cut(s) 342
NsiI ATGCAT 1 cut(s) 143
NspI RCATGY 2 cut(s) 162, 412
NspV TTCGAA 1 cut(s) 362
PciI ACATGT 1 cut(s) 158
PctI GAATGC 1 cut(s) 155
PfeI GAWTC 1 cut(s) 43
PkrI GCNGC 2 cut(s) 216, 285
PscI ACATGT 1 cut(s) 158
PspN4I GGNNCC 1 cut(s) 201
PspPI GGNCC 3 cut(s) 51, 209, 422
PsuI RGATCY 2 cut(s) 16, 118
RsaI GTAC 1 cut(s) 157
RsaNI GTAC 1 cut(s) 156
RseI CAYNNNNRTG 1 cut(s) 494
SatI GCNGC 2 cut(s) 215, 284
Sau3AI GATC 4 cut(s) 16, 78, 106, 118
Sau96I GGNCC 3 cut(s) 51, 209, 422
ScrFI CCNGG 2 cut(s) 49, 91
SduI GDGCHC 1 cut(s) 249
SetI ASST 7 cut(s) 63, 184, 211, 262, 319, 494, 550
SfaNI GCATC 1 cut(s) 150
SfuI TTCGAA 1 cut(s) 362
SinI GGWCC 3 cut(s) 51, 209, 422
SmiMI CAYNNNNRTG 1 cut(s) 494
SmlI CTYRAG 1 cut(s) 122
SmoI CTYRAG 1 cut(s) 122
SsiI CCGC 7 cut(s) 65, 153, 212, 236, 281, 284, 326
SspI AATATT 1 cut(s) 266
StyD4I CCNGG 2 cut(s) 47, 89
StyI CCWWGG 2 cut(s) 27, 495
TaaI ACNGT 1 cut(s) 115
TaqI TCGA 1 cut(s) 362
TauI GCSGC 1 cut(s) 286
TfiI GAWTC 1 cut(s) 43
TscAI CASTG 3 cut(s) 151, 249, 432
TseFI GTSAC 1 cut(s) 342
TseI GCWGC 1 cut(s) 214
Tsp45I GTSAC 1 cut(s) 342
TspDTI ATGAA 2 cut(s) 117, 526
TspRI CASTG 3 cut(s) 151, 249, 432
VneI GTGCAC 1 cut(s) 245
VpaK11BI GGWCC 3 cut(s) 51, 209, 422
XceI RCATGY 2 cut(s) 162, 412
XmiI GTMKAC 1 cut(s) 396
Zsp2I ATGCAT 1 cut(s) 143
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.