Rw6G043700

leucine-rich repeat extensin-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr6
OG0018919
Physical Location & Seq
Reverse (-)
66938630 .. 66939355
726 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw6G043700.1

Sequence Viewer

Length: 573 bp
ATGGGTAATTCCAAGGGATTTATGATAGGAAAATGGGTTCCTTGGGTTTTGAAGGCAGGGATTGTAGGGCTGGTAATGTTTGCTGGATTTACATATGGGGATCAAATGGAGGATCCAGAGACTGGTTTACTGTGTATTAGTGATTGTACTACATGTCCAGTCATATGTTCACCACCTCCTGCTCAAGTAGAGTCACATCCACCACCAGCACCATCATACCCACCACCAGCACCATCATCCCCACCACCAGTCCACCACTCGCCACCACCACCTCTATTTTACTACTATTCCCCGCCACACTCACCGCCACCTCCACCTCCACCTCCACCATCACCGCCGAAAGAATCACAATCATCTCCATCATATTCTTCACGGGGTCCTCCCCCGCCGCGTTTTGAATACTTCTACAACATGCCTCCTTCCGGTCCTGTGCTGCCAACAACAGCAGGACTACTGCATAACAATTCCTTTCCCTACTATTACTTTTACGCATCAGGGGCTTCTTCTGTTTCTGCTCATGCGGCCTTTTTTTTTATTATCTTCTTAGTTCAGCTTGTGTTTTCTTTTTGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

190

Amino Acids

20.61

Weight (kDa)

6.26

Isoelectric Point (pI)

88.62

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0018919)

Species Orthologous Gene IDs
prunus_persica Prupe.1G408700_v2.0.a1
pyrus_communis pycom15g05240
rosa_chinensis RchiOBHm_Chr6g0311291
rosa_laevigata RLG00000010421
rosa_rugosa Rorug06G0387000
rosa_samantha Rh6AG501800 Rh6BG512500 Rh6CG518200
rosa_wichuraiana Rw6G043700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 122
AccII CGCG 1 cut(s) 391
AciI CCGC 6 cut(s) 293, 305, 335, 386, 389, 521
AclWI GGATC 3 cut(s) 107, 108, 120
AfaI GTAC 1 cut(s) 148
AfiI CCNNNNNNNGG 2 cut(s) 122, 422
AflIII ACRYGT 1 cut(s) 152
AgsI TTSAA 2 cut(s) 52, 398
AloI GAACNNNNNNTCC 2 cut(s) 21, 53
AluBI AGCT 1 cut(s) 553
AluI AGCT 1 cut(s) 553
Alw26I GTCTC 1 cut(s) 113
AlwI GGATC 3 cut(s) 107, 108, 120
AlwNI CAGNNNCTG 1 cut(s) 122
AoxI GGCC 1 cut(s) 522
ApeKI GCWGC 1 cut(s) 433
AspS9I GGNCC 2 cut(s) 377, 425
AsuHPI GGTGA 3 cut(s) 162, 294, 324
AvaII GGWCC 2 cut(s) 377, 425
BamHI GGATCC 1 cut(s) 112
BbvI GCAGC 1 cut(s) 420
BccI CCATC 4 cut(s) 220, 241, 337, 367
BcoDI GTCTC 1 cut(s) 113
BisI GCNGC 3 cut(s) 389, 434, 522
BlsI GCNGC 3 cut(s) 390, 435, 523
Bme18I GGWCC 2 cut(s) 377, 425
BmgT120I GGNCC 2 cut(s) 377, 425
BmiI GGNNCC 3 cut(s) 39, 114, 378
BmsI GCATC 1 cut(s) 500
BpuEI CTTGAG 1 cut(s) 168
BsaJI CCNNGG 2 cut(s) 12, 41
BsaWI WCCGGW 1 cut(s) 422
Bsc4I CCNNNNNNNGG 2 cut(s) 122, 422
Bse1I ACTGG 3 cut(s) 127, 158, 248
BseDI CCNNGG 2 cut(s) 12, 41
BseGI GGATG 2 cut(s) 196, 236
BseLI CCNNNNNNNGG 2 cut(s) 122, 422
BseNI ACTGG 3 cut(s) 127, 158, 248
BseXI GCAGC 1 cut(s) 420
Bsh1236I CGCG 1 cut(s) 391
BshFI GGCC 1 cut(s) 524
BsiSI CCGG 1 cut(s) 423
BslI CCNNNNNNNGG 2 cut(s) 122, 422
BsmAI GTCTC 1 cut(s) 113
BsnI GGCC 1 cut(s) 524
Bsp143I GATC 2 cut(s) 100, 112
BspACI CCGC 6 cut(s) 293, 305, 335, 386, 389, 521
BspANI GGCC 1 cut(s) 524
BspFNI CGCG 1 cut(s) 391
BspLI GGNNCC 3 cut(s) 39, 114, 378
BspPI GGATC 3 cut(s) 107, 108, 120
BsrI ACTGG 3 cut(s) 127, 158, 248
BssECI CCNNGG 2 cut(s) 12, 41
BssMI GATC 2 cut(s) 100, 112
BssT1I CCWWGG 2 cut(s) 12, 41
Bst4CI ACNGT 1 cut(s) 132
BstDEI CTNAG 1 cut(s) 544
BstF5I GGATG 2 cut(s) 196, 236
BstFNI CGCG 1 cut(s) 391
BstKTI GATC 2 cut(s) 103, 115
BstMAI GTCTC 1 cut(s) 113
BstMBI GATC 2 cut(s) 100, 112
BstMWI GCNNNNNNNGC 2 cut(s) 497, 521
BstNSI RCATGY 2 cut(s) 156, 415
BstUI CGCG 1 cut(s) 391
BstV1I GCAGC 1 cut(s) 420
BstX2I RGATCY 1 cut(s) 112
BstYI RGATCY 1 cut(s) 112
BsuRI GGCC 1 cut(s) 524
BtsCI GGATG 2 cut(s) 196, 236
CaiI CAGNNNCTG 1 cut(s) 122
Cfr13I GGNCC 2 cut(s) 377, 425
Csp6I GTAC 1 cut(s) 147
CviAII CATG 3 cut(s) 153, 412, 518
CviJI RGCY 4 cut(s) 70, 500, 524, 553
CviKI_1 RGCY 4 cut(s) 70, 500, 524, 553
CviQI GTAC 1 cut(s) 147
DdeI CTNAG 1 cut(s) 544
DpnI GATC 2 cut(s) 102, 114
DpnII GATC 2 cut(s) 100, 112
Eco130I CCWWGG 2 cut(s) 12, 41
Eco47I GGWCC 2 cut(s) 377, 425
EcoO109I RGGNCCY 1 cut(s) 377
EcoT14I CCWWGG 2 cut(s) 12, 41
ErhI CCWWGG 2 cut(s) 12, 41
FaeI CATG 3 cut(s) 156, 415, 521
FatI CATG 3 cut(s) 152, 411, 517
FauI CCCGC 2 cut(s) 300, 393
FauNDI CATATG 2 cut(s) 94, 164
Fnu4HI GCNGC 3 cut(s) 389, 434, 522
FokI GGATG 2 cut(s) 183, 223
Fsp4HI GCNGC 3 cut(s) 389, 434, 522
GluI GCNGC 3 cut(s) 389, 434, 522
HaeIII GGCC 1 cut(s) 524
HapII CCGG 1 cut(s) 423
Hin1II CATG 3 cut(s) 156, 415, 521
HinfI GANTC 2 cut(s) 191, 344
HpaII CCGG 1 cut(s) 423
HphI GGTGA 3 cut(s) 162, 294, 324
Hpy166II GTNNAC 3 cut(s) 128, 170, 253
Hpy188III TCNNGA 1 cut(s) 116
Hpy8I GTNNAC 3 cut(s) 128, 170, 253
HpyAV CCTTC 2 cut(s) 46, 429
HpyCH4III ACNGT 1 cut(s) 132
HpyCH4V TGCA 1 cut(s) 457
HpyF10VI GCNNNNNNNGC 2 cut(s) 497, 521
HpyF3I CTNAG 1 cut(s) 544
Hsp92II CATG 3 cut(s) 156, 415, 521
Kzo9I GATC 2 cut(s) 100, 112
Lsp1109I GCAGC 1 cut(s) 420
LweI GCATC 1 cut(s) 500
MaeIII GTNAC 1 cut(s) 192
MalI GATC 2 cut(s) 102, 114
MboI GATC 2 cut(s) 100, 112
MboII GAAGA 3 cut(s) 360, 495, 532
MflI RGATCY 1 cut(s) 112
MluCI AATT 2 cut(s) 7, 463
MlyI GAGTC 1 cut(s) 200
MnlI CCTC 8 cut(s) 103, 186, 282, 321, 327, 333, 390, 426
MspI CCGG 1 cut(s) 423
MvnI CGCG 1 cut(s) 391
MwoI GCNNNNNNNGC 2 cut(s) 497, 521
NdeI CATATG 2 cut(s) 94, 164
NdeII GATC 2 cut(s) 100, 112
NlaIII CATG 3 cut(s) 156, 415, 521
NlaIV GGNNCC 3 cut(s) 39, 114, 378
NmuCI GTSAC 1 cut(s) 192
NspI RCATGY 2 cut(s) 156, 415
PciI ACATGT 1 cut(s) 152
PfeI GAWTC 1 cut(s) 344
PflMI CCANNNNNTGG 1 cut(s) 122
PkrI GCNGC 3 cut(s) 390, 435, 523
PleI GAGTC 1 cut(s) 199
PpsI GAGTC 1 cut(s) 199
PpuMI RGGWCCY 1 cut(s) 377
PscI ACATGT 1 cut(s) 152
Psp5II RGGWCCY 1 cut(s) 377
PspN4I GGNNCC 3 cut(s) 39, 114, 378
PspPI GGNCC 2 cut(s) 377, 425
PspPPI RGGWCCY 1 cut(s) 377
PstNI CAGNNNCTG 1 cut(s) 122
PsuI RGATCY 1 cut(s) 112
RsaI GTAC 1 cut(s) 148
RsaNI GTAC 1 cut(s) 147
SatI GCNGC 3 cut(s) 389, 434, 522
Sau3AI GATC 2 cut(s) 100, 112
Sau96I GGNCC 2 cut(s) 377, 425
SchI GAGTC 1 cut(s) 200
SetI ASST 6 cut(s) 178, 274, 313, 319, 325, 555
SfaNI GCATC 1 cut(s) 500
SinI GGWCC 2 cut(s) 377, 425
SmlI CTYRAG 1 cut(s) 183
SmoI CTYRAG 1 cut(s) 183
Sse9I AATT 2 cut(s) 7, 463
SsiI CCGC 6 cut(s) 293, 305, 335, 386, 389, 521
StyI CCWWGG 2 cut(s) 12, 41
TaaI ACNGT 1 cut(s) 132
TasI AATT 2 cut(s) 7, 463
TatI WGTACW 1 cut(s) 146
TauI GCSGC 2 cut(s) 391, 524
TfiI GAWTC 1 cut(s) 344
TseFI GTSAC 1 cut(s) 192
TseI GCWGC 1 cut(s) 433
Tsp45I GTSAC 1 cut(s) 192
Van91I CCANNNNNTGG 1 cut(s) 122
VpaK11BI GGWCC 2 cut(s) 377, 425
XceI RCATGY 2 cut(s) 156, 415
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.