RLG00000010421

leucine-rich repeat extensin-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0018919
Physical Location & Seq
Forward (+)
1473668 .. 1474222
555 bp
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UTR
Exon/CDS
Intron
RLM00000010421

Sequence Viewer

Length: 555 bp
ATGAGTAATTCCAAGGGATTTATGATAGGAAAATGGGTTCCTTGGGTTTTGAAGGCAGGGATTGTAGGGCTGGTAATGTTTGCTGGATTTACATATGGGGATCAAATGGAGGATCCAGAGACTGGTTTACTGTGTATTAGTGATTGTACTACATGTCCAGTCATATGTTCACCACCTCCTGCTCAAGTAGAGTCACATCCACCACCAGCACCATCATACCCACCACCAGCACCATCATCCCCACCACCAGTCCACAACTCGCCACCACCGCCTCAGTTTTACTACTACTCCCCGCCACACTCACCGCCACCATCACCGCCAAAAGAATCAAAATCACCTCCATCATCTTCTTCATGGGGACCACCCCCGCCACGTTTTGAATACTTCTACAACATGCCTCCTTCCGGTCCTGTGCTGCCAACAACAGCAGGACTACTGCATAACAATTCCTTTCCCTACTATTACTTTTACGCATCAGGGGCTTCTTCTGTTTCTGCTCATGCGGCCTTGTTTTTGATTATCTTCTTGGTTCAGCTTGTGTTTTCTTTTTGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

185

Amino Acids

19.94

Weight (kDa)

6.15

Isoelectric Point (pI)

87.19

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018919)

Species Orthologous Gene IDs
prunus_persica Prupe.1G408700_v2.0.a1
pyrus_communis pycom15g05240
rosa_chinensis RchiOBHm_Chr6g0311291
rosa_laevigata RLG00000010421
rosa_rugosa Rorug06G0387000
rosa_samantha Rh6AG501800 Rh6BG512500 Rh6CG518200
rosa_wichuraiana Rw6G043700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 122
AciI CCGC 6 cut(s) 269, 293, 305, 317, 368, 503
AclWI GGATC 3 cut(s) 107, 108, 120
AfaI GTAC 1 cut(s) 148
AfiI CCNNNNNNNGG 2 cut(s) 122, 404
AflIII ACRYGT 1 cut(s) 152
AgsI TTSAA 2 cut(s) 52, 380
AloI GAACNNNNNNTCC 2 cut(s) 21, 53
AluBI AGCT 1 cut(s) 535
AluI AGCT 1 cut(s) 535
Alw26I GTCTC 1 cut(s) 113
AlwI GGATC 3 cut(s) 107, 108, 120
AlwNI CAGNNNCTG 1 cut(s) 122
AoxI GGCC 1 cut(s) 504
ApeKI GCWGC 1 cut(s) 415
AspS9I GGNCC 2 cut(s) 359, 407
AsuHPI GGTGA 4 cut(s) 162, 294, 306, 327
AvaII GGWCC 2 cut(s) 359, 407
BamHI GGATCC 1 cut(s) 112
BbvI GCAGC 1 cut(s) 402
BccI CCATC 4 cut(s) 220, 241, 319, 349
BcoDI GTCTC 1 cut(s) 113
BisI GCNGC 2 cut(s) 416, 504
BlsI GCNGC 2 cut(s) 417, 505
Bme18I GGWCC 2 cut(s) 359, 407
BmgT120I GGNCC 2 cut(s) 359, 407
BmiI GGNNCC 3 cut(s) 39, 114, 360
BmsI GCATC 1 cut(s) 482
BpuEI CTTGAG 1 cut(s) 168
BsaJI CCNNGG 2 cut(s) 12, 41
BsaWI WCCGGW 1 cut(s) 404
BsaXI ACNNNNNCTCC 2 cut(s) 272, 302
Bsc4I CCNNNNNNNGG 2 cut(s) 122, 404
Bse1I ACTGG 3 cut(s) 127, 158, 248
BseDI CCNNGG 2 cut(s) 12, 41
BseGI GGATG 2 cut(s) 196, 236
BseLI CCNNNNNNNGG 2 cut(s) 122, 404
BseMII CTCAG 1 cut(s) 287
BseNI ACTGG 3 cut(s) 127, 158, 248
BseXI GCAGC 1 cut(s) 402
BshFI GGCC 1 cut(s) 506
BsiSI CCGG 1 cut(s) 405
BslFI GGGAC 1 cut(s) 372
BslI CCNNNNNNNGG 2 cut(s) 122, 404
BsmAI GTCTC 1 cut(s) 113
BsmFI GGGAC 1 cut(s) 372
BsnI GGCC 1 cut(s) 506
Bsp143I GATC 2 cut(s) 100, 112
BspACI CCGC 6 cut(s) 269, 293, 305, 317, 368, 503
BspANI GGCC 1 cut(s) 506
BspCNI CTCAG 1 cut(s) 286
BspLI GGNNCC 3 cut(s) 39, 114, 360
BspPI GGATC 3 cut(s) 107, 108, 120
BsrI ACTGG 3 cut(s) 127, 158, 248
BssECI CCNNGG 2 cut(s) 12, 41
BssMI GATC 2 cut(s) 100, 112
BssT1I CCWWGG 2 cut(s) 12, 41
Bst4CI ACNGT 1 cut(s) 132
BstDEI CTNAG 1 cut(s) 273
BstF5I GGATG 2 cut(s) 196, 236
BstKTI GATC 2 cut(s) 103, 115
BstMAI GTCTC 1 cut(s) 113
BstMBI GATC 2 cut(s) 100, 112
BstMWI GCNNNNNNNGC 3 cut(s) 268, 479, 503
BstNSI RCATGY 2 cut(s) 156, 397
BstV1I GCAGC 1 cut(s) 402
BstX2I RGATCY 1 cut(s) 112
BstYI RGATCY 1 cut(s) 112
BsuRI GGCC 1 cut(s) 506
BtsCI GGATG 2 cut(s) 196, 236
CaiI CAGNNNCTG 1 cut(s) 122
Cfr13I GGNCC 2 cut(s) 359, 407
Csp6I GTAC 1 cut(s) 147
CviAII CATG 4 cut(s) 153, 354, 394, 500
CviJI RGCY 4 cut(s) 70, 482, 506, 535
CviKI_1 RGCY 4 cut(s) 70, 482, 506, 535
CviQI GTAC 1 cut(s) 147
DdeI CTNAG 1 cut(s) 273
DpnI GATC 2 cut(s) 102, 114
DpnII GATC 2 cut(s) 100, 112
Eco130I CCWWGG 2 cut(s) 12, 41
Eco47I GGWCC 2 cut(s) 359, 407
EcoT14I CCWWGG 2 cut(s) 12, 41
ErhI CCWWGG 2 cut(s) 12, 41
FaeI CATG 4 cut(s) 156, 357, 397, 503
FaqI GGGAC 1 cut(s) 372
FatI CATG 4 cut(s) 152, 353, 393, 499
FauI CCCGC 2 cut(s) 300, 375
FauNDI CATATG 2 cut(s) 94, 164
Fnu4HI GCNGC 2 cut(s) 416, 504
FokI GGATG 2 cut(s) 183, 223
Fsp4HI GCNGC 2 cut(s) 416, 504
GluI GCNGC 2 cut(s) 416, 504
HaeIII GGCC 1 cut(s) 506
HapII CCGG 1 cut(s) 405
Hin1II CATG 4 cut(s) 156, 357, 397, 503
HinfI GANTC 2 cut(s) 191, 326
HpaII CCGG 1 cut(s) 405
HphI GGTGA 4 cut(s) 162, 294, 306, 327
Hpy166II GTNNAC 3 cut(s) 128, 170, 253
Hpy188III TCNNGA 1 cut(s) 116
Hpy8I GTNNAC 3 cut(s) 128, 170, 253
HpyAV CCTTC 2 cut(s) 46, 411
HpyCH4III ACNGT 1 cut(s) 132
HpyCH4IV ACGT 1 cut(s) 373
HpyCH4V TGCA 1 cut(s) 439
HpyF10VI GCNNNNNNNGC 3 cut(s) 268, 479, 503
HpyF3I CTNAG 1 cut(s) 273
HpySE526I ACGT 1 cut(s) 373
Hsp92II CATG 4 cut(s) 156, 357, 397, 503
Kzo9I GATC 2 cut(s) 100, 112
Lsp1109I GCAGC 1 cut(s) 402
LweI GCATC 1 cut(s) 482
MaeII ACGT 1 cut(s) 373
MaeIII GTNAC 1 cut(s) 192
MalI GATC 2 cut(s) 102, 114
MboI GATC 2 cut(s) 100, 112
MboII GAAGA 4 cut(s) 339, 342, 477, 514
MflI RGATCY 1 cut(s) 112
MluCI AATT 2 cut(s) 7, 445
MlyI GAGTC 1 cut(s) 200
MnlI CCTC 5 cut(s) 103, 186, 282, 348, 408
MspI CCGG 1 cut(s) 405
MwoI GCNNNNNNNGC 3 cut(s) 268, 479, 503
NdeI CATATG 2 cut(s) 94, 164
NdeII GATC 2 cut(s) 100, 112
NlaIII CATG 4 cut(s) 156, 357, 397, 503
NlaIV GGNNCC 3 cut(s) 39, 114, 360
NmuCI GTSAC 1 cut(s) 192
NspI RCATGY 2 cut(s) 156, 397
PciI ACATGT 1 cut(s) 152
PfeI GAWTC 1 cut(s) 326
PflMI CCANNNNNTGG 1 cut(s) 122
PkrI GCNGC 2 cut(s) 417, 505
PleI GAGTC 1 cut(s) 199
PpsI GAGTC 1 cut(s) 199
PscI ACATGT 1 cut(s) 152
PspN4I GGNNCC 3 cut(s) 39, 114, 360
PspPI GGNCC 2 cut(s) 359, 407
PstNI CAGNNNCTG 1 cut(s) 122
PsuI RGATCY 1 cut(s) 112
RsaI GTAC 1 cut(s) 148
RsaNI GTAC 1 cut(s) 147
SatI GCNGC 2 cut(s) 416, 504
Sau3AI GATC 2 cut(s) 100, 112
Sau96I GGNCC 2 cut(s) 359, 407
SchI GAGTC 1 cut(s) 200
SetI ASST 4 cut(s) 178, 340, 376, 537
SfaNI GCATC 1 cut(s) 482
SinI GGWCC 2 cut(s) 359, 407
SmlI CTYRAG 1 cut(s) 183
SmoI CTYRAG 1 cut(s) 183
Sse9I AATT 2 cut(s) 7, 445
SsiI CCGC 6 cut(s) 269, 293, 305, 317, 368, 503
StyI CCWWGG 2 cut(s) 12, 41
TaaI ACNGT 1 cut(s) 132
TaiI ACGT 1 cut(s) 376
TasI AATT 2 cut(s) 7, 445
TatI WGTACW 1 cut(s) 146
TauI GCSGC 1 cut(s) 506
TfiI GAWTC 1 cut(s) 326
TseFI GTSAC 1 cut(s) 192
TseI GCWGC 1 cut(s) 415
Tsp45I GTSAC 1 cut(s) 192
TspDTI ATGAA 1 cut(s) 342
Van91I CCANNNNNTGG 1 cut(s) 122
VpaK11BI GGWCC 2 cut(s) 359, 407
XceI RCATGY 2 cut(s) 156, 397
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.