Rh6CG518200

leucine-rich repeat extensin-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
OG0018919
Physical Location & Seq
Reverse (-)
67524251 .. 67524808
558 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG518200.1

Sequence Viewer

Length: 558 bp
ATGGGTAATTCCAAGGGATTTATGATAGGAAAATGGGTTCCTTGGGTTTTGAAGGCAGGGATTGTAGGGCTGGTAATGTTTGCTGGATTTACATATGGGGATCAAATGGAGGATCCAGAGACTGGTTTACTGTGTATTAGTGATTGTACTACATGTCCAGTCCTATGTTCACCACCTCCTGCTCAAGTAGAGTCACATCCACCACCAGCACCATCATACCCACCACCAGCACCATCATCCCCACCACCAGTCCACCACTCGCCACCACCGCCTCTATTTTACTACTATTCCCCGCCACACTCACCGCCACCTCCACCTCCACCATCACCGCCGAAAGAATCACAATCATCTCCTTCATGGGGTCCTCCCCCGCCGCGTTTTGAATACTTCTACAACATGCCTCCTTCCGGTCCTGTGCTGCCAACAACAGCAGGACTACTGCATAACAATTCCTTTCCCTACTATTACTTTTACGCATCAGGGGCTTCTTCTGTTTCTGCTCATGCGGCCTTGTTTTTGATTATCTTCTTGGTTCAGCTTGTGTTTTCTTTTTGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

185

Amino Acids

20.04

Weight (kDa)

6.0

Isoelectric Point (pI)

86.48

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018919)

Species Orthologous Gene IDs
prunus_persica Prupe.1G408700_v2.0.a1
pyrus_communis pycom15g05240
rosa_chinensis RchiOBHm_Chr6g0311291
rosa_laevigata RLG00000010421
rosa_rugosa Rorug06G0387000
rosa_samantha Rh6AG501800 Rh6BG512500 Rh6CG518200
rosa_wichuraiana Rw6G043700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 122
AccII CGCG 1 cut(s) 376
AciI CCGC 7 cut(s) 269, 293, 305, 329, 371, 374, 506
AclWI GGATC 3 cut(s) 107, 108, 120
AfaI GTAC 1 cut(s) 148
AfiI CCNNNNNNNGG 3 cut(s) 122, 359, 407
AflIII ACRYGT 1 cut(s) 152
AgsI TTSAA 2 cut(s) 52, 383
AloI GAACNNNNNNTCC 2 cut(s) 21, 53
AluBI AGCT 1 cut(s) 538
AluI AGCT 1 cut(s) 538
Alw26I GTCTC 1 cut(s) 113
AlwI GGATC 3 cut(s) 107, 108, 120
AlwNI CAGNNNCTG 1 cut(s) 122
AoxI GGCC 1 cut(s) 507
ApeKI GCWGC 1 cut(s) 418
AspS9I GGNCC 2 cut(s) 362, 410
AsuHPI GGTGA 3 cut(s) 162, 294, 318
AvaII GGWCC 2 cut(s) 362, 410
BamHI GGATCC 1 cut(s) 112
BbvI GCAGC 1 cut(s) 405
BccI CCATC 3 cut(s) 220, 241, 331
BcoDI GTCTC 1 cut(s) 113
BisI GCNGC 3 cut(s) 374, 419, 507
BlsI GCNGC 3 cut(s) 375, 420, 508
Bme18I GGWCC 2 cut(s) 362, 410
BmgT120I GGNCC 2 cut(s) 362, 410
BmiI GGNNCC 3 cut(s) 39, 114, 363
BmsI GCATC 1 cut(s) 485
BpuEI CTTGAG 1 cut(s) 168
BsaJI CCNNGG 2 cut(s) 12, 41
BsaWI WCCGGW 1 cut(s) 407
Bsc4I CCNNNNNNNGG 3 cut(s) 122, 359, 407
Bse1I ACTGG 3 cut(s) 127, 158, 248
BseDI CCNNGG 2 cut(s) 12, 41
BseGI GGATG 2 cut(s) 196, 236
BseLI CCNNNNNNNGG 3 cut(s) 122, 359, 407
BseNI ACTGG 3 cut(s) 127, 158, 248
BseXI GCAGC 1 cut(s) 405
Bsh1236I CGCG 1 cut(s) 376
BshFI GGCC 1 cut(s) 509
BsiSI CCGG 1 cut(s) 408
BslI CCNNNNNNNGG 3 cut(s) 122, 359, 407
BsmAI GTCTC 1 cut(s) 113
BsnI GGCC 1 cut(s) 509
Bsp143I GATC 2 cut(s) 100, 112
BspACI CCGC 7 cut(s) 269, 293, 305, 329, 371, 374, 506
BspANI GGCC 1 cut(s) 509
BspFNI CGCG 1 cut(s) 376
BspLI GGNNCC 3 cut(s) 39, 114, 363
BspPI GGATC 3 cut(s) 107, 108, 120
BsrI ACTGG 3 cut(s) 127, 158, 248
BssECI CCNNGG 2 cut(s) 12, 41
BssMI GATC 2 cut(s) 100, 112
BssT1I CCWWGG 2 cut(s) 12, 41
Bst4CI ACNGT 1 cut(s) 132
BstF5I GGATG 2 cut(s) 196, 236
BstFNI CGCG 1 cut(s) 376
BstKTI GATC 2 cut(s) 103, 115
BstMAI GTCTC 1 cut(s) 113
BstMBI GATC 2 cut(s) 100, 112
BstMWI GCNNNNNNNGC 3 cut(s) 268, 482, 506
BstNSI RCATGY 2 cut(s) 156, 400
BstUI CGCG 1 cut(s) 376
BstV1I GCAGC 1 cut(s) 405
BstX2I RGATCY 1 cut(s) 112
BstYI RGATCY 1 cut(s) 112
BsuRI GGCC 1 cut(s) 509
BtsCI GGATG 2 cut(s) 196, 236
CaiI CAGNNNCTG 1 cut(s) 122
Cfr13I GGNCC 2 cut(s) 362, 410
Csp6I GTAC 1 cut(s) 147
CviAII CATG 4 cut(s) 153, 357, 397, 503
CviJI RGCY 4 cut(s) 70, 485, 509, 538
CviKI_1 RGCY 4 cut(s) 70, 485, 509, 538
CviQI GTAC 1 cut(s) 147
DpnI GATC 2 cut(s) 102, 114
DpnII GATC 2 cut(s) 100, 112
Eco130I CCWWGG 2 cut(s) 12, 41
Eco47I GGWCC 2 cut(s) 362, 410
EcoO109I RGGNCCY 1 cut(s) 362
EcoT14I CCWWGG 2 cut(s) 12, 41
ErhI CCWWGG 2 cut(s) 12, 41
FaeI CATG 4 cut(s) 156, 360, 400, 506
FatI CATG 4 cut(s) 152, 356, 396, 502
FauI CCCGC 2 cut(s) 300, 378
FauNDI CATATG 1 cut(s) 94
Fnu4HI GCNGC 3 cut(s) 374, 419, 507
FokI GGATG 2 cut(s) 183, 223
Fsp4HI GCNGC 3 cut(s) 374, 419, 507
GluI GCNGC 3 cut(s) 374, 419, 507
HaeIII GGCC 1 cut(s) 509
HapII CCGG 1 cut(s) 408
Hin1II CATG 4 cut(s) 156, 360, 400, 506
HinfI GANTC 2 cut(s) 191, 338
HpaII CCGG 1 cut(s) 408
HphI GGTGA 3 cut(s) 162, 294, 318
Hpy166II GTNNAC 3 cut(s) 128, 170, 253
Hpy188III TCNNGA 1 cut(s) 116
Hpy8I GTNNAC 3 cut(s) 128, 170, 253
HpyAV CCTTC 3 cut(s) 46, 363, 414
HpyCH4III ACNGT 1 cut(s) 132
HpyCH4V TGCA 1 cut(s) 442
HpyF10VI GCNNNNNNNGC 3 cut(s) 268, 482, 506
Hsp92II CATG 4 cut(s) 156, 360, 400, 506
Kzo9I GATC 2 cut(s) 100, 112
Lsp1109I GCAGC 1 cut(s) 405
LweI GCATC 1 cut(s) 485
MaeIII GTNAC 1 cut(s) 192
MalI GATC 2 cut(s) 102, 114
MboI GATC 2 cut(s) 100, 112
MboII GAAGA 2 cut(s) 480, 517
MflI RGATCY 1 cut(s) 112
MluCI AATT 2 cut(s) 7, 448
MlyI GAGTC 1 cut(s) 200
MnlI CCTC 7 cut(s) 103, 186, 282, 321, 327, 375, 411
MspI CCGG 1 cut(s) 408
MvnI CGCG 1 cut(s) 376
MwoI GCNNNNNNNGC 3 cut(s) 268, 482, 506
NdeI CATATG 1 cut(s) 94
NdeII GATC 2 cut(s) 100, 112
NlaIII CATG 4 cut(s) 156, 360, 400, 506
NlaIV GGNNCC 3 cut(s) 39, 114, 363
NmuCI GTSAC 1 cut(s) 192
NspI RCATGY 2 cut(s) 156, 400
PciI ACATGT 1 cut(s) 152
PfeI GAWTC 1 cut(s) 338
PflMI CCANNNNNTGG 1 cut(s) 122
PkrI GCNGC 3 cut(s) 375, 420, 508
PleI GAGTC 1 cut(s) 199
PpsI GAGTC 1 cut(s) 199
PpuMI RGGWCCY 1 cut(s) 362
PscI ACATGT 1 cut(s) 152
Psp5II RGGWCCY 1 cut(s) 362
PspN4I GGNNCC 3 cut(s) 39, 114, 363
PspPI GGNCC 2 cut(s) 362, 410
PspPPI RGGWCCY 1 cut(s) 362
PstNI CAGNNNCTG 1 cut(s) 122
PsuI RGATCY 1 cut(s) 112
RsaI GTAC 1 cut(s) 148
RsaNI GTAC 1 cut(s) 147
SatI GCNGC 3 cut(s) 374, 419, 507
Sau3AI GATC 2 cut(s) 100, 112
Sau96I GGNCC 2 cut(s) 362, 410
SchI GAGTC 1 cut(s) 200
SetI ASST 4 cut(s) 178, 313, 319, 540
SfaNI GCATC 1 cut(s) 485
SinI GGWCC 2 cut(s) 362, 410
SmlI CTYRAG 1 cut(s) 183
SmoI CTYRAG 1 cut(s) 183
Sse9I AATT 2 cut(s) 7, 448
SsiI CCGC 7 cut(s) 269, 293, 305, 329, 371, 374, 506
StyI CCWWGG 2 cut(s) 12, 41
TaaI ACNGT 1 cut(s) 132
TasI AATT 2 cut(s) 7, 448
TatI WGTACW 1 cut(s) 146
TauI GCSGC 2 cut(s) 376, 509
TfiI GAWTC 1 cut(s) 338
TseFI GTSAC 1 cut(s) 192
TseI GCWGC 1 cut(s) 418
Tsp45I GTSAC 1 cut(s) 192
TspDTI ATGAA 1 cut(s) 345
Van91I CCANNNNNTGG 1 cut(s) 122
VpaK11BI GGWCC 2 cut(s) 362, 410
XceI RCATGY 2 cut(s) 156, 400
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.