Rh6AG501800

leucine-rich repeat extensin-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0018919
Physical Location & Seq
Reverse (-)
67569778 .. 67570344
567 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG501800.1

Sequence Viewer

Length: 567 bp
ATGGGTAATTCCAAGGGATTTATGATAGGAAAATGGGTTCCTTGGGTTTTGAAGGCAGGGATTGTAGGGCTGGTAATGTTTGCTGGATTTACATATGGGGATCAAATGGAGGATCCAGAGACTGGTTTACTGTGTATTAGTGATTGTACTACATGTCCAGTCATATGTTCACCACCTCCTGCTCAAGTAGAGTCATACCCACCACCAGCACCATCATACCCACCACCAGCACCATCATCCCCACCACCAGTCCACCACTCGCCACCACCACCTCTATTAAACTACTATTCCCCGCCACACTCACCGCCACCTCCACCTCCACCATCACCGCCGAAAGAATCACAATCATCTCCATCATATTCTTCATGGGGTCCTCCCCCGCCGCGTTTTGAATACTTCTACAACATGCCTCCTTCCGGTCCTGTGCTGCCAACAACAGCAGGACTACTGCATAACAATTCCTTTCCCTACTATTACTTTTACGCATCAGGGGCTTCTTCTGTTTCTGCTCATGCGGCCTTTTTTTTTATTATCTTCTTGGTTCAGCTTGTATTTTCTTTTTGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

188

Amino Acids

20.39

Weight (kDa)

5.86

Isoelectric Point (pI)

84.71

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018919)

Species Orthologous Gene IDs
prunus_persica Prupe.1G408700_v2.0.a1
pyrus_communis pycom15g05240
rosa_chinensis RchiOBHm_Chr6g0311291
rosa_laevigata RLG00000010421
rosa_rugosa Rorug06G0387000
rosa_samantha Rh6AG501800 Rh6BG512500 Rh6CG518200
rosa_wichuraiana Rw6G043700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 122
AccII CGCG 1 cut(s) 385
AciI CCGC 6 cut(s) 293, 305, 329, 380, 383, 515
AclWI GGATC 3 cut(s) 107, 108, 120
AfaI GTAC 1 cut(s) 148
AfiI CCNNNNNNNGG 2 cut(s) 122, 416
AflIII ACRYGT 1 cut(s) 152
AgsI TTSAA 2 cut(s) 52, 392
AloI GAACNNNNNNTCC 2 cut(s) 21, 53
AluBI AGCT 1 cut(s) 547
AluI AGCT 1 cut(s) 547
Alw26I GTCTC 1 cut(s) 113
AlwI GGATC 3 cut(s) 107, 108, 120
AlwNI CAGNNNCTG 1 cut(s) 122
AoxI GGCC 1 cut(s) 516
ApeKI GCWGC 1 cut(s) 427
AspS9I GGNCC 2 cut(s) 371, 419
AsuHPI GGTGA 3 cut(s) 162, 294, 318
AvaII GGWCC 2 cut(s) 371, 419
BamHI GGATCC 1 cut(s) 112
BbvI GCAGC 1 cut(s) 414
BccI CCATC 4 cut(s) 220, 241, 331, 361
BcoDI GTCTC 1 cut(s) 113
BisI GCNGC 3 cut(s) 383, 428, 516
BlsI GCNGC 3 cut(s) 384, 429, 517
Bme18I GGWCC 2 cut(s) 371, 419
BmgT120I GGNCC 2 cut(s) 371, 419
BmiI GGNNCC 3 cut(s) 39, 114, 372
BmsI GCATC 1 cut(s) 494
BpuEI CTTGAG 1 cut(s) 168
BsaJI CCNNGG 2 cut(s) 12, 41
BsaWI WCCGGW 1 cut(s) 416
Bsc4I CCNNNNNNNGG 2 cut(s) 122, 416
Bse1I ACTGG 3 cut(s) 127, 158, 248
BseDI CCNNGG 2 cut(s) 12, 41
BseGI GGATG 1 cut(s) 236
BseLI CCNNNNNNNGG 2 cut(s) 122, 416
BseNI ACTGG 3 cut(s) 127, 158, 248
BseXI GCAGC 1 cut(s) 414
Bsh1236I CGCG 1 cut(s) 385
BshFI GGCC 1 cut(s) 518
BsiSI CCGG 1 cut(s) 417
BslI CCNNNNNNNGG 2 cut(s) 122, 416
BsmAI GTCTC 1 cut(s) 113
BsnI GGCC 1 cut(s) 518
Bsp143I GATC 2 cut(s) 100, 112
BspACI CCGC 6 cut(s) 293, 305, 329, 380, 383, 515
BspANI GGCC 1 cut(s) 518
BspFNI CGCG 1 cut(s) 385
BspLI GGNNCC 3 cut(s) 39, 114, 372
BspPI GGATC 3 cut(s) 107, 108, 120
BsrI ACTGG 3 cut(s) 127, 158, 248
BssECI CCNNGG 2 cut(s) 12, 41
BssMI GATC 2 cut(s) 100, 112
BssT1I CCWWGG 2 cut(s) 12, 41
Bst4CI ACNGT 1 cut(s) 132
BstF5I GGATG 1 cut(s) 236
BstFNI CGCG 1 cut(s) 385
BstKTI GATC 2 cut(s) 103, 115
BstMAI GTCTC 1 cut(s) 113
BstMBI GATC 2 cut(s) 100, 112
BstMWI GCNNNNNNNGC 2 cut(s) 491, 515
BstNSI RCATGY 2 cut(s) 156, 409
BstUI CGCG 1 cut(s) 385
BstV1I GCAGC 1 cut(s) 414
BstX2I RGATCY 1 cut(s) 112
BstYI RGATCY 1 cut(s) 112
BsuRI GGCC 1 cut(s) 518
BtsCI GGATG 1 cut(s) 236
CaiI CAGNNNCTG 1 cut(s) 122
Cfr13I GGNCC 2 cut(s) 371, 419
Csp6I GTAC 1 cut(s) 147
CviAII CATG 4 cut(s) 153, 366, 406, 512
CviJI RGCY 4 cut(s) 70, 494, 518, 547
CviKI_1 RGCY 4 cut(s) 70, 494, 518, 547
CviQI GTAC 1 cut(s) 147
DpnI GATC 2 cut(s) 102, 114
DpnII GATC 2 cut(s) 100, 112
Eco130I CCWWGG 2 cut(s) 12, 41
Eco47I GGWCC 2 cut(s) 371, 419
EcoO109I RGGNCCY 1 cut(s) 371
EcoT14I CCWWGG 2 cut(s) 12, 41
ErhI CCWWGG 2 cut(s) 12, 41
FaeI CATG 4 cut(s) 156, 369, 409, 515
FatI CATG 4 cut(s) 152, 365, 405, 511
FauI CCCGC 2 cut(s) 300, 387
FauNDI CATATG 2 cut(s) 94, 164
Fnu4HI GCNGC 3 cut(s) 383, 428, 516
FokI GGATG 1 cut(s) 223
Fsp4HI GCNGC 3 cut(s) 383, 428, 516
GluI GCNGC 3 cut(s) 383, 428, 516
HaeIII GGCC 1 cut(s) 518
HapII CCGG 1 cut(s) 417
Hin1II CATG 4 cut(s) 156, 369, 409, 515
HinfI GANTC 2 cut(s) 191, 338
HpaII CCGG 1 cut(s) 417
HphI GGTGA 3 cut(s) 162, 294, 318
Hpy166II GTNNAC 3 cut(s) 128, 170, 253
Hpy188III TCNNGA 1 cut(s) 116
Hpy8I GTNNAC 3 cut(s) 128, 170, 253
HpyAV CCTTC 2 cut(s) 46, 423
HpyCH4III ACNGT 1 cut(s) 132
HpyCH4V TGCA 1 cut(s) 451
HpyF10VI GCNNNNNNNGC 2 cut(s) 491, 515
Hsp92II CATG 4 cut(s) 156, 369, 409, 515
Kzo9I GATC 2 cut(s) 100, 112
Lsp1109I GCAGC 1 cut(s) 414
LweI GCATC 1 cut(s) 494
MalI GATC 2 cut(s) 102, 114
MboI GATC 2 cut(s) 100, 112
MboII GAAGA 3 cut(s) 354, 489, 526
MflI RGATCY 1 cut(s) 112
MluCI AATT 2 cut(s) 7, 457
MlyI GAGTC 1 cut(s) 200
MnlI CCTC 7 cut(s) 103, 186, 282, 321, 327, 384, 420
MseI TTAA 1 cut(s) 278
MspI CCGG 1 cut(s) 417
MvnI CGCG 1 cut(s) 385
MwoI GCNNNNNNNGC 2 cut(s) 491, 515
NdeI CATATG 2 cut(s) 94, 164
NdeII GATC 2 cut(s) 100, 112
NlaIII CATG 4 cut(s) 156, 369, 409, 515
NlaIV GGNNCC 3 cut(s) 39, 114, 372
NspI RCATGY 2 cut(s) 156, 409
PciI ACATGT 1 cut(s) 152
PfeI GAWTC 1 cut(s) 338
PflMI CCANNNNNTGG 1 cut(s) 122
PkrI GCNGC 3 cut(s) 384, 429, 517
PleI GAGTC 1 cut(s) 199
PpsI GAGTC 1 cut(s) 199
PpuMI RGGWCCY 1 cut(s) 371
PscI ACATGT 1 cut(s) 152
Psp5II RGGWCCY 1 cut(s) 371
PspN4I GGNNCC 3 cut(s) 39, 114, 372
PspPI GGNCC 2 cut(s) 371, 419
PspPPI RGGWCCY 1 cut(s) 371
PstNI CAGNNNCTG 1 cut(s) 122
PsuI RGATCY 1 cut(s) 112
RsaI GTAC 1 cut(s) 148
RsaNI GTAC 1 cut(s) 147
SaqAI TTAA 1 cut(s) 278
SatI GCNGC 3 cut(s) 383, 428, 516
Sau3AI GATC 2 cut(s) 100, 112
Sau96I GGNCC 2 cut(s) 371, 419
SchI GAGTC 1 cut(s) 200
SetI ASST 5 cut(s) 178, 274, 313, 319, 549
SfaNI GCATC 1 cut(s) 494
SinI GGWCC 2 cut(s) 371, 419
SmlI CTYRAG 1 cut(s) 183
SmoI CTYRAG 1 cut(s) 183
Sse9I AATT 2 cut(s) 7, 457
SsiI CCGC 6 cut(s) 293, 305, 329, 380, 383, 515
StyI CCWWGG 2 cut(s) 12, 41
TaaI ACNGT 1 cut(s) 132
TasI AATT 2 cut(s) 7, 457
TatI WGTACW 1 cut(s) 146
TauI GCSGC 2 cut(s) 385, 518
TfiI GAWTC 1 cut(s) 338
Tru1I TTAA 1 cut(s) 278
Tru9I TTAA 1 cut(s) 278
TseI GCWGC 1 cut(s) 427
TspDTI ATGAA 1 cut(s) 354
Van91I CCANNNNNTGG 1 cut(s) 122
VpaK11BI GGWCC 2 cut(s) 371, 419
XceI RCATGY 2 cut(s) 156, 409
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.