Prupe.1G449900_v2.0.a1

Casein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0016276
Physical Location & Seq
Reverse (-)
37937599 .. 37941489
3891 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G449900.1

Sequence Viewer

Length: 1311 bp
ATGGAGAGGATCGTCGCAGAGAAGTACAAGTTAGGTCGCAAAATTGGGAGCGGCTCATTCGGCGAATTGTACCTCGCAACTCATATTGAGACTGGCGAGAATTTGGCCGCGAAAATTGAAAATAACAAGACAAAACATCCGCAACTGTTGTATGAAGCCAAGCTTTATAAAACTCTACAGGGAGGAAGTGGTATTGCAGGCATTAAATGGGCGGGATTTGATAGGGACGATAATGTTCTCATCATTGACTTATTGGGACCGAGTCTCGAGGACCTCTTTGTGTACTGTGGGAGGAAGTTTTCACTGAAAACAGTCTTAATGTTGGCTGACCAGATGATTACAAGAATAGAGTATGTGCATTCTAAAGGGTTTTTGCATAGAGACATCAAACCTGACAACTTCCTCATGGGTCTCGGCAGGAAAGCAAATCAGGTTTACATTATTGATTTTGGACTTGCAAAAAGATTTCGGGACCAAAATACAAACCGGCACATTCCGTACAGAGAAAACAAAAGCTTAACAGGAACTGCACGTTATGCTAGTTGCAATACCCATTTGGGAATTGATCAGAGTCGTCGGGATGATTTGGAGTCACTTGGCTATGTTCTTCTGTACTTCTTAAGAGGAAGCCTTCCTTGGCAGGGTCTTAAAGCTGCAACGAAGAAGCAAAAATATGATAAGATTTGTGAGAAGAAGCTATCAACTCCCATTGAGGTCCTATGTAAGTCTCATCCTGTGGAGTTTGCATCCTACTTCCATTATTGCCACTCTTTAACATTTGATCAACGCCCGGATTATGCATTCTTGAAGCGCCTGTTTCGTGACTTATTCAGCCGTGAAGGGTATGATTTTGATTATGTATTTGACTGGACAATTCTAAAATACCATCAGGCACAACAGACAAGGACCCAGGGTCAATCATCTGGTGTTCAGCCAGCTGTAGCGACTAACGGTCGAGCAGCGGCTAGCAGTCGACCAGTGCCTATGGATGCGATGAGACTTAAAGGAGTTAATGATGTTTCTGGATCAGCTGAGGTCGCAGACCGTAGACGGTCGAGTAATCTTGCTCATCCAGATGTTCATATGCAATTTAGATCGTCAACAGCCCAGAATTTAGGTGCTAATAATCTGGTTGAAAAACATCATGTGAGCAATGTGCCGATGCCATCTTCTACGTATGCTCTCAGAAAAAATTATAAAAAACCAGAGGGGCCGACTGAAAATGCAAACTTAGGTCGTGGAGTTGGGAACCAAAATGGTGCTTCAAGCAGTTGGATGCCATCAATAAACCAGGTTTCTTCCTCAAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04068 ko04310 ko04340 ko04341 ko04390 ko04391 ko04392 ko04540 ko04710 ko04711 map04068 map04310 map04340 map04341 map04390 map04391 map04392 map04540 map04710 map04711
Pfam Domains
Protein Families
Pkinase

Protein Analysis

437

Amino Acids

49.17

Weight (kDa)

9.53

Isoelectric Point (pI)

37.97

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016276)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g35730 FvH4_2g35730 FvH4_2g35730
malus_domestica MD08G1115500.v1.1 MD15G1094700.v1.1
prunus_persica Prupe.1G449900_v2.0.a1
rosa_chinensis RchiOBHm_Chr6g0306051
rosa_laevigata RLG00000010828
rosa_roxburghii Rroxscaffold_7G00162090
rosa_rugosa Rorug06G0346600 Rorug06G0346700
rosa_samantha Rh6BG442100 Rh6CG473200 Rh6DG459500
rosa_wichuraiana Rw6G039990

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 168, 1197
AccBSI CCGCTC 1 cut(s) 51
AccI GTMKAC 2 cut(s) 973, 1048
AccII CGCG 1 cut(s) 110
AciI CCGC 5 cut(s) 51, 108, 140, 212, 962
AclWI GGATC 2 cut(s) 17, 1033
AcoI YGGCCR 1 cut(s) 105
AcsI RAATTY 2 cut(s) 100, 1111
AfaI GTAC 5 cut(s) 26, 71, 284, 500, 614
AfiI CCNNNNNNNGG 1 cut(s) 641
AflII CTTAAG 1 cut(s) 619
AgsI TTSAA 4 cut(s) 119, 808, 1136, 1266
AhdI GACNNNNNGTC 2 cut(s) 912, 951
AjnI CCWGG 2 cut(s) 909, 1290
AjuI GAANNNNNNNTTGG 2 cut(s) 619, 651
AluBI AGCT 6 cut(s) 163, 516, 653, 697, 938, 1031
AluI AGCT 6 cut(s) 163, 516, 653, 697, 938, 1031
Alw26I GTCTC 6 cut(s) 83, 269, 375, 416, 732, 991
AlwI GGATC 2 cut(s) 17, 1033
AlwNI CAGNNNCTG 1 cut(s) 527
Ama87I CYCGRG 1 cut(s) 266
AoxI GGCC 2 cut(s) 105, 1211
ApeKI GCWGC 2 cut(s) 653, 959
ApoI RAATTY 2 cut(s) 100, 1111
AspLEI GCGC 1 cut(s) 813
AspS9I GGNCC 6 cut(s) 257, 271, 472, 715, 906, 1211
AsuC2I CCSGG 1 cut(s) 791
AsuNHI GCTAGC 1 cut(s) 965
AvaI CYCGRG 1 cut(s) 266
AvaII GGWCC 5 cut(s) 257, 271, 472, 715, 906
BbvCI CCTCAGC 1 cut(s) 1032
BbvI GCAGC 2 cut(s) 640, 971
BccI CCATC 3 cut(s) 894, 1174, 1288
BceAI ACGGC 1 cut(s) 819
BciT130I CCWGG 2 cut(s) 911, 1292
BclI TGATCA 2 cut(s) 565, 781
BcnI CCSGG 1 cut(s) 791
BcoDI GTCTC 6 cut(s) 83, 269, 375, 416, 732, 991
BfaI CTAG 2 cut(s) 540, 966
BfmI CTRYAG 2 cut(s) 176, 939
BfoI RGCGCY 1 cut(s) 814
BfrI CTTAAG 1 cut(s) 619
BisI GCNGC 5 cut(s) 52, 108, 654, 960, 963
BlsI GCNGC 5 cut(s) 53, 109, 655, 961, 964
Bme1390I CCNGG 3 cut(s) 791, 911, 1292
Bme18I GGWCC 5 cut(s) 257, 271, 472, 715, 906
BmeRI GACNNNNNGTC 2 cut(s) 912, 951
BmeT110I CYCGRG 1 cut(s) 266
BmgT120I GGNCC 6 cut(s) 257, 271, 472, 715, 906, 1211
BmiI GGNNCC 5 cut(s) 258, 473, 908, 1212, 1250
BmrFI CCNGG 3 cut(s) 791, 911, 1292
BmsI GCATC 4 cut(s) 755, 979, 1152, 1266
BmtI GCTAGC 1 cut(s) 969
Bpu10I CCTNAGC 1 cut(s) 1032
BpuMI CCSGG 1 cut(s) 791
BsaAI YACGTR 1 cut(s) 1176
BsaI GGTCTC 1 cut(s) 416
BsaJI CCNNGG 3 cut(s) 635, 909, 910
Bsc4I CCNNNNNNNGG 1 cut(s) 641
Bse118I RCCGGY 1 cut(s) 486
Bse1I ACTGG 3 cut(s) 97, 872, 977
Bse3DI GCAATG 1 cut(s) 1159
BseBI CCWGG 2 cut(s) 911, 1292
BseDI CCNNGG 3 cut(s) 635, 909, 910
BseGI GGATG 7 cut(s) 136, 586, 730, 746, 994, 1069, 1281
BseLI CCNNNNNNNGG 1 cut(s) 641
BseMI GCAATG 1 cut(s) 1159
BseMII CTCAG 2 cut(s) 1023, 1198
BseNI ACTGG 3 cut(s) 97, 872, 977
BseXI GCAGC 2 cut(s) 640, 971
BsgI GTGCAG 1 cut(s) 513
Bsh1236I CGCG 1 cut(s) 110
Bsh1285I CGRYCG 2 cut(s) 955, 1055
BshFI GGCC 2 cut(s) 107, 1213
BsiEI CGRYCG 2 cut(s) 955, 1055
BsiHKCI CYCGRG 1 cut(s) 266
BsiSI CCGG 2 cut(s) 487, 791
BslFI GGGAC 3 cut(s) 239, 270, 485
BslI CCNNNNNNNGG 1 cut(s) 641
BsmAI GTCTC 6 cut(s) 83, 269, 375, 416, 732, 991
BsmFI GGGAC 3 cut(s) 239, 270, 485
BsmI GAATGC 2 cut(s) 358, 800
BsnI GGCC 2 cut(s) 107, 1213
Bso31I GGTCTC 1 cut(s) 416
BsoBI CYCGRG 1 cut(s) 266
Bsp143I GATC 5 cut(s) 9, 565, 781, 1025, 1094
BspACI CCGC 5 cut(s) 51, 108, 140, 212, 962
BspANI GGCC 2 cut(s) 107, 1213
BspCNI CTCAG 2 cut(s) 1024, 1197
BspFNI CGCG 1 cut(s) 110
BspLI GGNNCC 5 cut(s) 258, 473, 908, 1212, 1250
BspOI GCTAGC 1 cut(s) 969
BspPI GGATC 2 cut(s) 17, 1033
BspTI CTTAAG 1 cut(s) 619
BspTNI GGTCTC 1 cut(s) 416
BsrBI CCGCTC 1 cut(s) 51
BsrDI GCAATG 1 cut(s) 1159
BsrFI RCCGGY 1 cut(s) 486
BsrI ACTGG 3 cut(s) 97, 872, 977
BssAI RCCGGY 1 cut(s) 486
BssECI CCNNGG 3 cut(s) 635, 909, 910
BssMI GATC 5 cut(s) 9, 565, 781, 1025, 1094
BssT1I CCWWGG 1 cut(s) 635
Bst2UI CCWGG 2 cut(s) 911, 1292
Bst4CI ACNGT 6 cut(s) 147, 287, 313, 953, 1046, 1053
BstAFI CTTAAG 1 cut(s) 619
BstAPI GCANNNNNTGC 1 cut(s) 536
BstBAI YACGTR 1 cut(s) 1176
BstC8I GCNNGC 3 cut(s) 199, 936, 967
BstDEI CTNAG 3 cut(s) 1032, 1184, 1231
BstF5I GGATG 7 cut(s) 136, 586, 730, 746, 994, 1069, 1281
BstFNI CGCG 1 cut(s) 110
BstH2I RGCGCY 1 cut(s) 814
BstHHI GCGC 1 cut(s) 813
BstKTI GATC 5 cut(s) 12, 568, 784, 1028, 1097
BstMAI GTCTC 6 cut(s) 83, 269, 375, 416, 732, 991
BstMBI GATC 5 cut(s) 9, 565, 781, 1025, 1094
BstMCI CGRYCG 2 cut(s) 955, 1055
BstMWI GCNNNNNNNGC 3 cut(s) 60, 536, 1037
BstNI CCWGG 2 cut(s) 911, 1292
BstSCI CCNGG 3 cut(s) 789, 909, 1290
BstSFI CTRYAG 2 cut(s) 176, 939
BstSNI TACGTA 1 cut(s) 1176
BstUI CGCG 1 cut(s) 110
BstV1I GCAGC 2 cut(s) 640, 971
BsuRI GGCC 2 cut(s) 107, 1213
BtgZI GCGATG 1 cut(s) 1007
BtsCI GGATG 7 cut(s) 136, 586, 730, 746, 994, 1069, 1281
BtsIMutI CAGTG 2 cut(s) 302, 984
Cac8I GCNNGC 3 cut(s) 199, 936, 967
CaiI CAGNNNCTG 1 cut(s) 527
CfoI GCGC 1 cut(s) 813
Cfr10I RCCGGY 1 cut(s) 486
Cfr13I GGNCC 6 cut(s) 257, 271, 472, 715, 906, 1211
CsiI ACCWGGT 1 cut(s) 1290
Csp6I GTAC 5 cut(s) 25, 70, 283, 499, 613
CviAII CATG 2 cut(s) 406, 1145
CviQI GTAC 5 cut(s) 25, 70, 283, 499, 613
DdeI CTNAG 3 cut(s) 1032, 1184, 1231
DpnI GATC 5 cut(s) 11, 567, 783, 1027, 1096
DpnII GATC 5 cut(s) 9, 565, 781, 1025, 1094
DriI GACNNNNNGTC 2 cut(s) 912, 951
EaeI YGGCCR 1 cut(s) 105
Eam1105I GACNNNNNGTC 2 cut(s) 912, 951
Eco105I TACGTA 1 cut(s) 1176
Eco130I CCWWGG 1 cut(s) 635
Eco31I GGTCTC 1 cut(s) 416
Eco47I GGWCC 5 cut(s) 257, 271, 472, 715, 906
Eco88I CYCGRG 1 cut(s) 266
EcoO109I RGGNCCY 3 cut(s) 271, 715, 906
EcoRII CCWGG 2 cut(s) 909, 1290
EcoT14I CCWWGG 1 cut(s) 635
EcoT22I ATGCAT 1 cut(s) 802
ErhI CCWWGG 1 cut(s) 635
FaeI CATG 2 cut(s) 409, 1148
FalI AAGNNNNNCTT 4 cut(s) 147, 179, 619, 651
FaqI GGGAC 3 cut(s) 239, 270, 485
FatI CATG 2 cut(s) 405, 1144
FauI CCCGC 1 cut(s) 205
FauNDI CATATG 1 cut(s) 1083
FbaI TGATCA 2 cut(s) 565, 781
FblI GTMKAC 2 cut(s) 973, 1048
Fnu4HI GCNGC 5 cut(s) 52, 108, 654, 960, 963
FokI GGATG 7 cut(s) 123, 593, 717, 733, 1001, 1056, 1288
Fsp4HI GCNGC 5 cut(s) 52, 108, 654, 960, 963
FspBI CTAG 2 cut(s) 540, 966
GlaI GCGC 1 cut(s) 812
GluI GCNGC 5 cut(s) 52, 108, 654, 960, 963
HaeII RGCGCY 1 cut(s) 814
HaeIII GGCC 2 cut(s) 107, 1213
HapII CCGG 2 cut(s) 487, 791
HhaI GCGC 1 cut(s) 813
Hin1II CATG 2 cut(s) 409, 1148
Hin6I GCGC 1 cut(s) 811
HinP1I GCGC 1 cut(s) 811
HincII GTYRAC 2 cut(s) 974, 1101
HindII GTYRAC 2 cut(s) 974, 1101
HindIII AAGCTT 2 cut(s) 161, 514
HinfI GANTC 3 cut(s) 262, 571, 590
HpaII CCGG 2 cut(s) 487, 791
Hpy166II GTNNAC 5 cut(s) 283, 436, 974, 1049, 1101
Hpy188I TCNGA 2 cut(s) 570, 1187
Hpy188III TCNNGA 7 cut(s) 266, 470, 578, 805, 821, 1023, 1073
Hpy8I GTNNAC 5 cut(s) 283, 436, 974, 1049, 1101
Hpy99I CGWCG 2 cut(s) 17, 579
HpyAV CCTTC 2 cut(s) 641, 833
HpyCH4III ACNGT 6 cut(s) 147, 287, 313, 953, 1046, 1053
HpyCH4IV ACGT 2 cut(s) 532, 1175
HpyF10VI GCNNNNNNNGC 3 cut(s) 60, 536, 1037
HpyF3I CTNAG 3 cut(s) 1032, 1184, 1231
HpySE526I ACGT 2 cut(s) 532, 1175
Hsp92II CATG 2 cut(s) 409, 1148
HspAI GCGC 1 cut(s) 811
Ksp22I TGATCA 2 cut(s) 565, 781
Kzo9I GATC 5 cut(s) 9, 565, 781, 1025, 1094
LmnI GCTCC 1 cut(s) 48
Lsp1109I GCAGC 2 cut(s) 640, 971
LweI GCATC 4 cut(s) 755, 979, 1152, 1266
MabI ACCWGGT 1 cut(s) 1290
MaeI CTAG 2 cut(s) 540, 966
MaeII ACGT 2 cut(s) 532, 1175
MaeIII GTNAC 2 cut(s) 591, 821
MalI GATC 5 cut(s) 11, 567, 783, 1027, 1096
MbiI CCGCTC 1 cut(s) 51
MboI GATC 5 cut(s) 9, 565, 781, 1025, 1094
MboII GAAGA 5 cut(s) 599, 673, 703, 1161, 1290
MluCI AATT 9 cut(s) 42, 65, 100, 114, 561, 873, 1088, 1111, 1192
MlyI GAGTC 3 cut(s) 271, 580, 599
MmeI TCCRAC 1 cut(s) 1253
Mph1103I ATGCAT 1 cut(s) 802
MseI TTAA 8 cut(s) 204, 317, 518, 620, 648, 773, 1002, 1011
MslI CAYNNNNRTG 1 cut(s) 1074
MspA1I CMGCKG 3 cut(s) 938, 962, 1031
MspCI CTTAAG 1 cut(s) 619
MspI CCGG 2 cut(s) 487, 791
MspR9I CCNGG 3 cut(s) 791, 911, 1292
Mva1269I GAATGC 2 cut(s) 358, 800
MvaI CCWGG 2 cut(s) 911, 1292
MvnI CGCG 1 cut(s) 110
MwoI GCNNNNNNNGC 3 cut(s) 60, 536, 1037
NciI CCSGG 1 cut(s) 791
NdeI CATATG 1 cut(s) 1083
NdeII GATC 5 cut(s) 9, 565, 781, 1025, 1094
NheI GCTAGC 1 cut(s) 965
NlaIII CATG 2 cut(s) 409, 1148
NlaIV GGNNCC 5 cut(s) 258, 473, 908, 1212, 1250
NmeAIII GCCGAG 1 cut(s) 393
NmuCI GTSAC 2 cut(s) 591, 821
NsiI ATGCAT 1 cut(s) 802
PaeR7I CTCGAG 1 cut(s) 266
PasI CCCWGGG 1 cut(s) 910
PctI GAATGC 2 cut(s) 358, 800
PflFI GACNNNGTC 1 cut(s) 261
PkrI GCNGC 5 cut(s) 53, 109, 655, 961, 964
PleI GAGTC 3 cut(s) 270, 579, 598
PpsI GAGTC 3 cut(s) 270, 579, 598
Ppu21I YACGTR 1 cut(s) 1176
PpuMI RGGWCCY 3 cut(s) 271, 715, 906
PsiI TTATAA 2 cut(s) 168, 1197
Psp5II RGGWCCY 3 cut(s) 271, 715, 906
Psp6I CCWGG 2 cut(s) 909, 1290
PspGI CCWGG 2 cut(s) 909, 1290
PspN4I GGNNCC 5 cut(s) 258, 473, 908, 1212, 1250
PspPI GGNCC 6 cut(s) 257, 271, 472, 715, 906, 1211
PspPPI RGGWCCY 3 cut(s) 271, 715, 906
PstNI CAGNNNCTG 1 cut(s) 527
PsyI GACNNNGTC 1 cut(s) 261
PvuII CAGCTG 2 cut(s) 938, 1031
RsaI GTAC 5 cut(s) 26, 71, 284, 500, 614
RsaNI GTAC 5 cut(s) 25, 70, 283, 499, 613
RseI CAYNNNNRTG 1 cut(s) 1074
SalI GTCGAC 1 cut(s) 972
SaqAI TTAA 8 cut(s) 204, 317, 518, 620, 648, 773, 1002, 1011
SatI GCNGC 5 cut(s) 52, 108, 654, 960, 963
Sau3AI GATC 5 cut(s) 9, 565, 781, 1025, 1094
Sau96I GGNCC 6 cut(s) 257, 271, 472, 715, 906, 1211
SchI GAGTC 3 cut(s) 271, 580, 599
ScrFI CCNGG 3 cut(s) 791, 911, 1292
SexAI ACCWGGT 1 cut(s) 1290
SfaNI GCATC 4 cut(s) 755, 979, 1152, 1266
SfcI CTRYAG 2 cut(s) 176, 939
Sfr274I CTCGAG 1 cut(s) 266
SinI GGWCC 5 cut(s) 257, 271, 472, 715, 906
SlaI CTCGAG 1 cut(s) 266
SmiMI CAYNNNNRTG 1 cut(s) 1074
SmlI CTYRAG 2 cut(s) 266, 619
SmoI CTYRAG 2 cut(s) 266, 619
SnaBI TACGTA 1 cut(s) 1176
Sse9I AATT 9 cut(s) 42, 65, 100, 114, 561, 873, 1088, 1111, 1192
SsiI CCGC 5 cut(s) 51, 108, 140, 212, 962
SspMI CTAG 2 cut(s) 540, 966
StyD4I CCNGG 3 cut(s) 789, 909, 1290
StyI CCWWGG 1 cut(s) 635
TaaI ACNGT 6 cut(s) 147, 287, 313, 953, 1046, 1053
TaiI ACGT 2 cut(s) 535, 1178
TaqI TCGA 4 cut(s) 267, 955, 973, 1055
TaqII GACCGA 1 cut(s) 274
TasI AATT 9 cut(s) 42, 65, 100, 114, 561, 873, 1088, 1111, 1192
TatI WGTACW 3 cut(s) 24, 282, 612
TauI GCSGC 3 cut(s) 54, 110, 965
Tru1I TTAA 8 cut(s) 204, 317, 518, 620, 648, 773, 1002, 1011
Tru9I TTAA 8 cut(s) 204, 317, 518, 620, 648, 773, 1002, 1011
TscAI CASTG 2 cut(s) 309, 984
TseFI GTSAC 2 cut(s) 591, 821
TseI GCWGC 2 cut(s) 653, 959
Tsp45I GTSAC 2 cut(s) 591, 821
TspDTI ATGAA 2 cut(s) 168, 1070
TspGWI ACGGA 1 cut(s) 486
TspRI CASTG 2 cut(s) 309, 984
Tth111I GACNNNGTC 1 cut(s) 261
Vha464I CTTAAG 1 cut(s) 619
VpaK11BI GGWCC 5 cut(s) 257, 271, 472, 715, 906
XapI RAATTY 2 cut(s) 100, 1111
XhoI CTCGAG 1 cut(s) 266
XmiI GTMKAC 2 cut(s) 973, 1048
XspI CTAG 2 cut(s) 540, 966
Zsp2I ATGCAT 1 cut(s) 802
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.