Prupe.1G454300_v2.0.a1

Group 2 truncated hemoglobin

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0016598
Physical Location & Seq
Reverse (-)
38186893 .. 38188366
1474 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G454300.1

Sequence Viewer

Length: 534 bp
ATGCAGAGCCTGCAAGCCAAGGCCGCCGAGTGGAGCGGAGTTGACTCGGCGGACGCGTTCGCCATCGACGAGTCGAACCTGTTCGAGAAACTAGGGCTCCAGGCCTTCGTCAACCTCTCCACCAATTTCTACAACAGGGTTTACGACGACGAACAAGAATGGTTTCGATCAATTTTCGCCAGTTCCAAGAAGGAAGACGCAATCCAAAACCAGTACGAGTTTTTCGTGCAGAGAATGGGAGGCCCCAATCTCTACTCTCAGAGAAGAGGCCATCCGGCTCTGATTGCACGTCACCGTCCATTTCCCGTCACGCACGAAGCGGCAGAGAGGTGGCTGCATCATATGCAGCAAGCATTGGACACCAGTTCGGACATTGATGCCGAATCCAAGCTCAAAATGATGAACTTTTTTAGGCACACTGCGTTCTTCCTTGTGGCTGGAGACGAGTTGAAGAAGAATCAGACTCAGGCACAGCAACCTCCTCCATCTAAGCATGGAACCAGCAACAACCACCATGCGTGCAAAAAAATTTGA

Protein Analysis

178

Amino Acids

20.34

Weight (kDa)

6.75

Isoelectric Point (pI)

42.9

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016598)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G32690
fragaria_vesca FvH4_2g36290
malus_domestica MD15G1099500.v1.1
prunus_persica Prupe.1G454300_v2.0.a1
pyrus_communis pycom15g09150
rosa_chinensis RchiOBHm_Chr6g0305591
rosa_laevigata RLG00000010874
rosa_multiflora Rmu_sc0001809.1_g000009
rosa_roxburghii Rroxscaffold_7G00162550
rosa_rugosa Rorug06G0342000
rosa_samantha Rh6BG447500 Rh6CG467700 Rh6DG454300
rosa_wichuraiana Rw6G039570

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 36
AccII CGCG 1 cut(s) 56
AciI CCGC 4 cut(s) 24, 36, 50, 320
AcsI RAATTY 1 cut(s) 528
AfaI GTAC 1 cut(s) 215
AfiI CCNNNNNNNGG 1 cut(s) 30
AflIII ACRYGT 1 cut(s) 54
AgsI TTSAA 1 cut(s) 451
AjiI CACGTC 1 cut(s) 290
AjnI CCWGG 1 cut(s) 99
AluBI AGCT 1 cut(s) 391
AluI AGCT 1 cut(s) 391
Alw26I GTCTC 1 cut(s) 435
AlwNI CAGNNNCTG 1 cut(s) 10
AoxI GGCC 4 cut(s) 21, 102, 241, 268
ApeKI GCWGC 2 cut(s) 334, 346
ApoI RAATTY 1 cut(s) 528
Asp700I GAANNNNTTC 2 cut(s) 80, 162
AspS9I GGNCC 1 cut(s) 242
AsuHPI GGTGA 1 cut(s) 284
BanII GRGCYC 1 cut(s) 99
BbsI GAAGAC 1 cut(s) 201
BbvI GCAGC 2 cut(s) 321, 358
BccI CCATC 3 cut(s) 71, 279, 493
BciT130I CCWGG 1 cut(s) 101
BcoDI GTCTC 1 cut(s) 435
BfaI CTAG 1 cut(s) 92
BisI GCNGC 4 cut(s) 24, 321, 335, 347
BlsI GCNGC 4 cut(s) 25, 322, 336, 348
Bme1390I CCNGG 1 cut(s) 101
BmgBI CACGTC 1 cut(s) 290
BmgT120I GGNCC 1 cut(s) 242
BmiI GGNNCC 3 cut(s) 98, 244, 499
BmrFI CCNGG 1 cut(s) 101
BmsI GCATC 2 cut(s) 346, 367
BpiI GAAGAC 1 cut(s) 201
BpmI CTGGAG 2 cut(s) 83, 459
BsaJI CCNNGG 1 cut(s) 18
BsaXI ACNNNNNCTCC 2 cut(s) 81, 111
Bsc4I CCNNNNNNNGG 1 cut(s) 30
Bse1I ACTGG 3 cut(s) 180, 211, 363
BseBI CCWGG 1 cut(s) 101
BseDI CCNNGG 1 cut(s) 18
BseGI GGATG 1 cut(s) 271
BseLI CCNNNNNNNGG 1 cut(s) 30
BseMII CTCAG 2 cut(s) 272, 479
BseNI ACTGG 3 cut(s) 180, 211, 363
BseRI GAGGAG 1 cut(s) 471
BseXI GCAGC 2 cut(s) 321, 358
BsgI GTGCAG 1 cut(s) 248
Bsh1236I CGCG 1 cut(s) 56
BshFI GGCC 4 cut(s) 23, 104, 243, 270
BsiSI CCGG 1 cut(s) 275
BslI CCNNNNNNNGG 1 cut(s) 30
BsmAI GTCTC 1 cut(s) 435
BsmBI CGTCTC 1 cut(s) 435
BsnI GGCC 4 cut(s) 23, 104, 243, 270
Bsp1286I GDGCHC 1 cut(s) 99
Bsp143I GATC 1 cut(s) 167
BspACI CCGC 4 cut(s) 24, 36, 50, 320
BspANI GGCC 4 cut(s) 23, 104, 243, 270
BspCNI CTCAG 2 cut(s) 271, 478
BspFNI CGCG 1 cut(s) 56
BspLI GGNNCC 3 cut(s) 98, 244, 499
BsrBI CCGCTC 1 cut(s) 36
BsrI ACTGG 3 cut(s) 180, 211, 363
BssECI CCNNGG 1 cut(s) 18
BssMI GATC 1 cut(s) 167
BssT1I CCWWGG 1 cut(s) 18
Bst2UI CCWGG 1 cut(s) 101
Bst4CI ACNGT 1 cut(s) 296
Bst6I CTCTTC 1 cut(s) 259
BstAPI GCANNNNNTGC 2 cut(s) 10, 343
BstC8I GCNNGC 4 cut(s) 11, 15, 351, 520
BstDEI CTNAG 3 cut(s) 258, 465, 489
BstF5I GGATG 1 cut(s) 271
BstFNI CGCG 1 cut(s) 56
BstKTI GATC 1 cut(s) 170
BstMAI GTCTC 1 cut(s) 435
BstMBI GATC 1 cut(s) 167
BstMWI GCNNNNNNNGC 4 cut(s) 10, 23, 284, 343
BstNI CCWGG 1 cut(s) 101
BstSCI CCNGG 1 cut(s) 99
BstUI CGCG 1 cut(s) 56
BstV1I GCAGC 2 cut(s) 321, 358
BstV2I GAAGAC 1 cut(s) 201
BsuRI GGCC 4 cut(s) 23, 104, 243, 270
BtrI CACGTC 1 cut(s) 290
BtsCI GGATG 1 cut(s) 271
BtsI GCAGTG 1 cut(s) 417
BtsIMutI CAGTG 1 cut(s) 417
Cac8I GCNNGC 4 cut(s) 11, 15, 351, 520
CaiI CAGNNNCTG 1 cut(s) 10
Cfr13I GGNCC 1 cut(s) 242
CseI GACGC 2 cut(s) 62, 206
Csp6I GTAC 1 cut(s) 214
CviAII CATG 2 cut(s) 494, 515
CviQI GTAC 1 cut(s) 214
DdeI CTNAG 3 cut(s) 258, 465, 489
DpnI GATC 1 cut(s) 169
DpnII GATC 1 cut(s) 167
Eam1104I CTCTTC 1 cut(s) 259
EarI CTCTTC 1 cut(s) 259
EciI GGCGGA 1 cut(s) 65
Eco130I CCWWGG 1 cut(s) 18
Eco147I AGGCCT 1 cut(s) 104
Eco24I GRGCYC 1 cut(s) 99
EcoO109I RGGNCCY 1 cut(s) 242
EcoRII CCWGG 1 cut(s) 99
EcoT14I CCWWGG 1 cut(s) 18
EcoT38I GRGCYC 1 cut(s) 99
ErhI CCWWGG 1 cut(s) 18
Esp3I CGTCTC 1 cut(s) 435
FaeI CATG 2 cut(s) 497, 518
FaiI YATR 4 cut(s) 342, 344, 495, 516
FatI CATG 2 cut(s) 493, 514
FauNDI CATATG 1 cut(s) 342
Fnu4HI GCNGC 4 cut(s) 24, 321, 335, 347
FokI GGATG 1 cut(s) 258
FriOI GRGCYC 1 cut(s) 99
Fsp4HI GCNGC 4 cut(s) 24, 321, 335, 347
FspBI CTAG 1 cut(s) 92
GluI GCNGC 4 cut(s) 24, 321, 335, 347
GsuI CTGGAG 2 cut(s) 83, 459
HaeIII GGCC 4 cut(s) 23, 104, 243, 270
HapII CCGG 1 cut(s) 275
HgaI GACGC 2 cut(s) 62, 206
Hin1II CATG 2 cut(s) 497, 518
HincII GTYRAC 2 cut(s) 43, 112
HindII GTYRAC 2 cut(s) 43, 112
HinfI GANTC 5 cut(s) 44, 71, 383, 457, 463
HpaII CCGG 1 cut(s) 275
HphI GGTGA 1 cut(s) 284
Hpy166II GTNNAC 3 cut(s) 43, 112, 142
Hpy188I TCNGA 4 cut(s) 261, 282, 370, 462
Hpy188III TCNNGA 1 cut(s) 85
Hpy8I GTNNAC 3 cut(s) 43, 112, 142
Hpy99I CGWCG 3 cut(s) 71, 149, 152
HpyAV CCTTC 2 cut(s) 115, 184
HpyCH4III ACNGT 1 cut(s) 296
HpyCH4IV ACGT 1 cut(s) 289
HpyCH4V TGCA 7 cut(s) 4, 13, 229, 287, 337, 346, 522
HpyF10VI GCNNNNNNNGC 4 cut(s) 10, 23, 284, 343
HpyF3I CTNAG 3 cut(s) 258, 465, 489
HpySE526I ACGT 1 cut(s) 289
Hsp92II CATG 2 cut(s) 497, 518
Kzo9I GATC 1 cut(s) 167
LmnI GCTCC 2 cut(s) 33, 102
Lsp1109I GCAGC 2 cut(s) 321, 358
LweI GCATC 2 cut(s) 346, 367
MaeI CTAG 1 cut(s) 92
MaeII ACGT 1 cut(s) 289
MaeIII GTNAC 2 cut(s) 290, 307
MalI GATC 1 cut(s) 169
MbiI CCGCTC 1 cut(s) 36
MboI GATC 1 cut(s) 167
MboII GAAGA 5 cut(s) 206, 276, 418, 463, 466
MhlI GDGCHC 1 cut(s) 99
MluCI AATT 3 cut(s) 124, 171, 528
MluI ACGCGT 1 cut(s) 54
MlyI GAGTC 3 cut(s) 38, 80, 457
MnlI CCTC 6 cut(s) 125, 233, 260, 321, 489, 492
MroXI GAANNNNTTC 2 cut(s) 80, 162
MspI CCGG 1 cut(s) 275
MspR9I CCNGG 1 cut(s) 101
MvaI CCWGG 1 cut(s) 101
MvnI CGCG 1 cut(s) 56
MwoI GCNNNNNNNGC 4 cut(s) 10, 23, 284, 343
NdeI CATATG 1 cut(s) 342
NdeII GATC 1 cut(s) 167
NlaIII CATG 2 cut(s) 497, 518
NlaIV GGNNCC 3 cut(s) 98, 244, 499
NmeAIII GCCGAG 2 cut(s) 26, 52
NmuCI GTSAC 2 cut(s) 290, 307
PceI AGGCCT 1 cut(s) 104
PcsI WCGNNNNNNNCGW 3 cut(s) 53, 66, 222
PdmI GAANNNNTTC 2 cut(s) 80, 162
PfeI GAWTC 2 cut(s) 383, 457
PkrI GCNGC 4 cut(s) 25, 322, 336, 348
PleI GAGTC 3 cut(s) 38, 79, 457
PpsI GAGTC 3 cut(s) 38, 79, 457
Psp6I CCWGG 1 cut(s) 99
PspGI CCWGG 1 cut(s) 99
PspN4I GGNNCC 3 cut(s) 98, 244, 499
PspPI GGNCC 1 cut(s) 242
PstNI CAGNNNCTG 1 cut(s) 10
RsaI GTAC 1 cut(s) 215
RsaNI GTAC 1 cut(s) 214
SatI GCNGC 4 cut(s) 24, 321, 335, 347
Sau3AI GATC 1 cut(s) 167
Sau96I GGNCC 1 cut(s) 242
SchI GAGTC 3 cut(s) 38, 80, 457
ScrFI CCNGG 1 cut(s) 101
SduI GDGCHC 1 cut(s) 99
SetI ASST 6 cut(s) 81, 117, 292, 332, 393, 481
SfaNI GCATC 2 cut(s) 346, 367
Sse9I AATT 3 cut(s) 124, 171, 528
SseBI AGGCCT 1 cut(s) 104
SsiI CCGC 4 cut(s) 24, 36, 50, 320
SspMI CTAG 1 cut(s) 92
StuI AGGCCT 1 cut(s) 104
StyD4I CCNGG 1 cut(s) 99
StyI CCWWGG 1 cut(s) 18
TaaI ACNGT 1 cut(s) 296
TaiI ACGT 1 cut(s) 292
TaqI TCGA 4 cut(s) 66, 74, 84, 166
TasI AATT 3 cut(s) 124, 171, 528
TauI GCSGC 2 cut(s) 26, 323
TfiI GAWTC 2 cut(s) 383, 457
TscAI CASTG 1 cut(s) 424
TseFI GTSAC 2 cut(s) 290, 307
TseI GCWGC 2 cut(s) 334, 346
Tsp45I GTSAC 2 cut(s) 290, 307
TspDTI ATGAA 1 cut(s) 416
TspRI CASTG 1 cut(s) 424
XapI RAATTY 1 cut(s) 528
XmnI GAANNNNTTC 2 cut(s) 80, 162
XspI CTAG 1 cut(s) 92
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.