Rorug06G0342000

Group 2 truncated hemoglobin

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
Physical Location & Seq
Forward (+)
49274071 .. 49275664
1594 bp
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UTR
Exon/CDS
Intron
Rorug06G0342000.1

Sequence Viewer

Length: 312 bp
ATGCCCTCACTTGTACTTGACCGCGATCAGACCATAAAAAATGCCATCAAACAGGTTGTTGAAATTGACGGTGGGAGTGGATCTGCTTCTTTGACAGATCTGTTGAAACATGACAAGGTTCTGAGCAAGAAGCCCCCTGCTCCTCACCGAGTTGTGCCTGATTATCTGTTGAATGCAACAACTAAAGAAGCCAGCAAGAGAGTTAAGCTTGCCAACCTTGGTCGCCGTGGATTCAAGAAAAAATTCAAGGAAGATAAGGACCCCCTTAAGTCTTTCAGTGCTCAGCTTATTTCCTGGAGGCCTACACCCTAG

Protein Analysis

103

Amino Acids

11.46

Weight (kDa)

10.1

Isoelectric Point (pI)

27.8

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0016598)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G32690
fragaria_vesca FvH4_2g36290
malus_domestica MD15G1099500.v1.1
prunus_persica Prupe.1G454300_v2.0.a1
pyrus_communis pycom15g09150
rosa_chinensis RchiOBHm_Chr6g0305591
rosa_laevigata RLG00000010874
rosa_multiflora Rmu_sc0001809.1_g000009
rosa_roxburghii Rroxscaffold_7G00162550
rosa_rugosa Rorug06G0342000
rosa_samantha Rh6BG447500 Rh6CG467700 Rh6DG454300
rosa_wichuraiana Rw6G039570

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 24
AciI CCGC 1 cut(s) 22
AclWI GGATC 1 cut(s) 88
AcsI RAATTY 1 cut(s) 242
AfaI GTAC 1 cut(s) 15
AflII CTTAAG 1 cut(s) 266
AgsI TTSAA 5 cut(s) 62, 106, 172, 235, 247
AjnI CCWGG 1 cut(s) 293
AluBI AGCT 2 cut(s) 208, 286
AluI AGCT 2 cut(s) 208, 286
Alw21I GWGCWC 1 cut(s) 283
AlwI GGATC 1 cut(s) 88
AoxI GGCC 1 cut(s) 299
ApoI RAATTY 1 cut(s) 242
Asp700I GAANNNNTTC 1 cut(s) 242
AspS9I GGNCC 1 cut(s) 259
AsuHPI GGTGA 1 cut(s) 137
AvaII GGWCC 1 cut(s) 259
Bbv12I GWGCWC 1 cut(s) 283
BccI CCATC 1 cut(s) 53
BceAI ACGGC 1 cut(s) 210
BciT130I CCWGG 1 cut(s) 295
BfaI CTAG 1 cut(s) 310
BfrI CTTAAG 1 cut(s) 266
BglII AGATCT 1 cut(s) 97
BlpI GCTNAGC 1 cut(s) 282
Bme1390I CCNGG 1 cut(s) 295
Bme18I GGWCC 1 cut(s) 259
BmgT120I GGNCC 1 cut(s) 259
BmiI GGNNCC 1 cut(s) 261
BmrFI CCNGG 1 cut(s) 295
Bpu1102I GCTNAGC 1 cut(s) 282
BsaJI CCNNGG 2 cut(s) 217, 226
BseBI CCWGG 1 cut(s) 295
BseDI CCNNGG 2 cut(s) 217, 226
BseMII CTCAG 2 cut(s) 113, 296
BseRI GAGGAG 1 cut(s) 132
Bsh1236I CGCG 1 cut(s) 24
BshFI GGCC 1 cut(s) 301
BsiHKAI GWGCWC 1 cut(s) 283
BsmI GAATGC 1 cut(s) 178
BsnI GGCC 1 cut(s) 301
Bsp1286I GDGCHC 1 cut(s) 283
Bsp143I GATC 3 cut(s) 25, 80, 97
Bsp1720I GCTNAGC 1 cut(s) 282
BspACI CCGC 1 cut(s) 22
BspANI GGCC 1 cut(s) 301
BspCNI CTCAG 2 cut(s) 114, 295
BspFNI CGCG 1 cut(s) 24
BspLI GGNNCC 1 cut(s) 261
BspPI GGATC 1 cut(s) 88
BspTI CTTAAG 1 cut(s) 266
BssECI CCNNGG 2 cut(s) 217, 226
BssMI GATC 3 cut(s) 25, 80, 97
BssT1I CCWWGG 1 cut(s) 217
Bst2UI CCWGG 1 cut(s) 295
Bst4CI ACNGT 1 cut(s) 71
BstAFI CTTAAG 1 cut(s) 266
BstC8I GCNNGC 2 cut(s) 193, 210
BstDEI CTNAG 2 cut(s) 122, 282
BstDSI CCRYGG 1 cut(s) 226
BstFNI CGCG 1 cut(s) 24
BstKTI GATC 3 cut(s) 28, 83, 100
BstMBI GATC 3 cut(s) 25, 80, 97
BstNI CCWGG 1 cut(s) 295
BstSCI CCNGG 1 cut(s) 293
BstUI CGCG 1 cut(s) 24
BstX2I RGATCY 2 cut(s) 80, 97
BstYI RGATCY 2 cut(s) 80, 97
BsuRI GGCC 1 cut(s) 301
BtgI CCRYGG 1 cut(s) 226
BtsIMutI CAGTG 1 cut(s) 283
Cac8I GCNNGC 2 cut(s) 193, 210
Cfr13I GGNCC 1 cut(s) 259
Csp6I GTAC 1 cut(s) 14
CviAII CATG 1 cut(s) 110
CviJI RGCY 5 cut(s) 133, 191, 208, 286, 301
CviKI_1 RGCY 5 cut(s) 133, 191, 208, 286, 301
CviQI GTAC 1 cut(s) 14
DdeI CTNAG 2 cut(s) 122, 282
DpnI GATC 3 cut(s) 27, 82, 99
DpnII GATC 3 cut(s) 25, 80, 97
Eco130I CCWWGG 1 cut(s) 217
Eco147I AGGCCT 1 cut(s) 301
Eco47I GGWCC 1 cut(s) 259
EcoO109I RGGNCCY 1 cut(s) 259
EcoRII CCWGG 1 cut(s) 293
EcoT14I CCWWGG 1 cut(s) 217
ErhI CCWWGG 1 cut(s) 217
FaeI CATG 1 cut(s) 113
FaiI YATR 2 cut(s) 35, 111
FatI CATG 1 cut(s) 109
FspBI CTAG 1 cut(s) 310
HaeIII GGCC 1 cut(s) 301
Hin1II CATG 1 cut(s) 113
HindIII AAGCTT 1 cut(s) 206
HinfI GANTC 1 cut(s) 231
HphI GGTGA 1 cut(s) 137
Hpy188I TCNGA 2 cut(s) 30, 123
Hpy188III TCNNGA 1 cut(s) 235
HpyCH4III ACNGT 1 cut(s) 71
HpyCH4V TGCA 1 cut(s) 176
HpyF3I CTNAG 2 cut(s) 122, 282
Hsp92II CATG 1 cut(s) 113
Kzo9I GATC 3 cut(s) 25, 80, 97
LmnI GCTCC 1 cut(s) 145
LpnPI CCDG 6 cut(s) 38, 150, 171, 205, 280, 307
MaeI CTAG 1 cut(s) 310
MalI GATC 3 cut(s) 27, 82, 99
MboI GATC 3 cut(s) 25, 80, 97
MboII GAAGA 1 cut(s) 263
MflI RGATCY 2 cut(s) 80, 97
MhlI GDGCHC 1 cut(s) 283
MluCI AATT 2 cut(s) 63, 242
MnlI CCTC 3 cut(s) 16, 153, 291
MroXI GAANNNNTTC 1 cut(s) 242
MseI TTAA 2 cut(s) 204, 267
MspCI CTTAAG 1 cut(s) 266
MspR9I CCNGG 1 cut(s) 295
Mva1269I GAATGC 1 cut(s) 178
MvaI CCWGG 1 cut(s) 295
MvnI CGCG 1 cut(s) 24
NdeII GATC 3 cut(s) 25, 80, 97
NlaIII CATG 1 cut(s) 113
NlaIV GGNNCC 1 cut(s) 261
PceI AGGCCT 1 cut(s) 301
PctI GAATGC 1 cut(s) 178
PdmI GAANNNNTTC 1 cut(s) 242
PfeI GAWTC 1 cut(s) 231
PfoI TCCNGGA 1 cut(s) 293
PpuMI RGGWCCY 1 cut(s) 259
Psp5II RGGWCCY 1 cut(s) 259
Psp6I CCWGG 1 cut(s) 293
PspGI CCWGG 1 cut(s) 293
PspN4I GGNNCC 1 cut(s) 261
PspPI GGNCC 1 cut(s) 259
PspPPI RGGWCCY 1 cut(s) 259
PsuI RGATCY 2 cut(s) 80, 97
RsaI GTAC 1 cut(s) 15
RsaNI GTAC 1 cut(s) 14
SaqAI TTAA 2 cut(s) 204, 267
Sau3AI GATC 3 cut(s) 25, 80, 97
Sau96I GGNCC 1 cut(s) 259
ScrFI CCNGG 1 cut(s) 295
SduI GDGCHC 1 cut(s) 283
SetI ASST 5 cut(s) 57, 120, 210, 219, 288
SinI GGWCC 1 cut(s) 259
SmlI CTYRAG 1 cut(s) 266
SmoI CTYRAG 1 cut(s) 266
Sse9I AATT 2 cut(s) 63, 242
SseBI AGGCCT 1 cut(s) 301
SsiI CCGC 1 cut(s) 22
SspMI CTAG 1 cut(s) 310
StuI AGGCCT 1 cut(s) 301
StyD4I CCNGG 1 cut(s) 293
StyI CCWWGG 1 cut(s) 217
TaaI ACNGT 1 cut(s) 71
TasI AATT 2 cut(s) 63, 242
TatI WGTACW 1 cut(s) 13
TfiI GAWTC 1 cut(s) 231
Tru1I TTAA 2 cut(s) 204, 267
Tru9I TTAA 2 cut(s) 204, 267
TscAI CASTG 1 cut(s) 283
TspRI CASTG 1 cut(s) 283
Vha464I CTTAAG 1 cut(s) 266
VpaK11BI GGWCC 1 cut(s) 259
XapI RAATTY 1 cut(s) 242
XmnI GAANNNNTTC 1 cut(s) 242
XspI CTAG 1 cut(s) 310
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.