Prupe.1G501800_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0010529
Physical Location & Seq
Reverse (-)
41517909 .. 41520238
2330 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G501800.2

Sequence Viewer

Length: 1302 bp
ATGGCGTCAGTTATCGGATGGTACGGACCGCTCATCGACTTGTCCAAGGCGGCGCTTCACGTCGGCGATTACGTTCAGCTTGTCGTCTTCGTCCACAGAACGACTCCTCTTCAGTATAAATTGTCAAAAGGCGGAGAGGTAATCCGAACGGATATCCAAGTGGGAGATGAGACGAGACCGTTCTTCTCCGTATCCTTATGGCAGAAGCCAATAGCATCCATGGCTGTAGCTGGCGACGTCGTTTTGTTACAAAATGTGAAGATAACAAAATATGGTGATGTTGTTGAGGCCAGAACACACCACTACTCATCCTTACAATGTCTACTTCACCCTTACGATTCCATCCTTACTAAAGGTGTCAATGACTTGATAGAGGAGTGTAGAGTTGGGATAGCAACAAAAGAAAAGCTTAGAAAGGTAGTAGAATGGGTGAAGAAGAGCAACACAACTCATGAGTTCCATGGCTGTCAGCTGCAGGAGGGGCAACTCTCAAGAAACTGGAAGCTCCCGGAAGAGAGGAAACAGCCTAAGGACTGTTTCTCACTTTCGCAATTATCACGCCTACCCGATTCTTGCAAGGCCGTCTTCTATGCATCCGTTGCTGAAATTTTTCTGCCGTTTACCTTGTCATCTCCTGCTGAATGTGAGTTACTTGACAAGGAAGACATGTTTGTCAGTAGGAGATTATATAAAACAGGAGATGGCGGTTTAGCAACAGATCTCATTTGTACAGGCTGCGAGCTTTGTGGTTCCCCTTTGGAGCTGGACAGTGAGAACATGTTTAAGCAGAATGGAGTTGCACTTTATTGTTCGGAAAGCTTTAACCGCCTTCATGTCATAAGCCTCATATACAAGCCCTTCATGTTGTATGTATGGGACGAATCGGATTATGCGCCACTCCTGGTCAGAAACAAGGCCGCAGAGCTCTTGTTTGGGAACATCAAGGCTGAAAGAGTCTATTCATGCTATAGGGGGAGAAAGCATGCTGGAGAAGTTGATTTGAAAGAGATTCCCACACATAATTCAAAAAGCATCGGGCAAACTAAAGCTGCTGCCGACAAAGGAGTTTTGGTTTCTTGTTCATCAGATGTACACAAGAAGAGCTTGGAAACAAAGGGAAAACACTGTTTTCAGGAAAATATGGACTTCTATGGGATTTGGTTGATTCTTCTGAAAACACTACTGCAGCAAGGAAAGAACAGCCCTTTCAGATTTGAAGTCAATGTAAATGCTGGTTTGGATAAGGAAAATGGGAGGTTTGAAATGGTTTCTGTGCAGATGCGATGCTTCAGAACCAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

434

Amino Acids

48.9

Weight (kDa)

8.27

Isoelectric Point (pI)

41.14

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 671
AatII GACGTC 1 cut(s) 240
AccBSI CCGCTC 1 cut(s) 31
AccI GTMKAC 1 cut(s) 322
AciI CCGC 6 cut(s) 29, 50, 132, 705, 826, 918
AcsI RAATTY 1 cut(s) 606
AcuI CTGAAG 2 cut(s) 95, 1273
AcyI GRCGYC 2 cut(s) 5, 237
AfaI GTAC 3 cut(s) 23, 730, 1092
AflIII ACRYGT 2 cut(s) 666, 777
AgsI TTSAA 4 cut(s) 1003, 1026, 1217, 1262
AjiI CACGTC 1 cut(s) 61
AjnI CCWGG 1 cut(s) 900
Alw21I GWGCWC 1 cut(s) 927
Alw26I GTCTC 2 cut(s) 164, 169
AoxI GGCC 3 cut(s) 288, 579, 915
ApeKI GCWGC 5 cut(s) 472, 735, 1049, 1052, 1186
ApoI RAATTY 1 cut(s) 606
Asp700I GAANNNNTTC 1 cut(s) 609
AspLEI GCGC 2 cut(s) 55, 895
AspS9I GGNCC 1 cut(s) 26
AsuC2I CCSGG 1 cut(s) 509
AsuHPI GGTGA 3 cut(s) 287, 320, 442
AvaII GGWCC 1 cut(s) 26
AxyI CCTNAGG 1 cut(s) 528
BanII GRGCYC 1 cut(s) 927
BbsI GAAGAC 3 cut(s) 79, 577, 669
Bbv12I GWGCWC 1 cut(s) 927
BbvI GCAGC 5 cut(s) 459, 722, 1036, 1039, 1198
BccI CCATC 3 cut(s) 12, 350, 695
BceAI ACGGC 2 cut(s) 566, 601
BciT130I CCWGG 1 cut(s) 902
BciVI GTATCC 1 cut(s) 202
BcnI CCSGG 1 cut(s) 509
BcoDI GTCTC 2 cut(s) 164, 169
BfmI CTRYAG 4 cut(s) 225, 473, 967, 1184
BfoI RGCGCY 1 cut(s) 56
BfuI GTATCC 1 cut(s) 202
BglII AGATCT 1 cut(s) 718
BisI GCNGC 7 cut(s) 51, 473, 736, 918, 1050, 1053, 1187
BlsI GCNGC 7 cut(s) 52, 474, 737, 919, 1051, 1054, 1188
Bme1390I CCNGG 2 cut(s) 509, 902
Bme18I GGWCC 1 cut(s) 26
BmgBI CACGTC 1 cut(s) 61
BmgT120I GGNCC 1 cut(s) 26
BmiI GGNNCC 1 cut(s) 751
BmrFI CCNGG 2 cut(s) 509, 902
BmsI GCATC 5 cut(s) 224, 602, 1041, 1269, 1274
BpiI GAAGAC 3 cut(s) 79, 577, 669
BpmI CTGGAG 1 cut(s) 1008
BpuEI CTTGAG 1 cut(s) 475
BpuMI CCSGG 1 cut(s) 509
BsaHI GRCGYC 2 cut(s) 5, 237
BsaI GGTCTC 1 cut(s) 169
BsaJI CCNNGG 3 cut(s) 45, 219, 460
BsaXI ACNNNNNCTCC 2 cut(s) 1056, 1086
Bse1I ACTGG 1 cut(s) 503
Bse21I CCTNAGG 1 cut(s) 528
BseBI CCWGG 1 cut(s) 902
BseDI CCNNGG 3 cut(s) 45, 219, 460
BseGI GGATG 5 cut(s) 23, 215, 308, 342, 593
BseNI ACTGG 1 cut(s) 503
BseRI GAGGAG 2 cut(s) 96, 389
BseXI GCAGC 5 cut(s) 459, 722, 1036, 1039, 1198
BsgI GTGCAG 1 cut(s) 1295
BshFI GGCC 3 cut(s) 290, 581, 917
BsiHKAI GWGCWC 1 cut(s) 927
BsiSI CCGG 1 cut(s) 509
BslFI GGGAC 1 cut(s) 890
BsmAI GTCTC 2 cut(s) 164, 169
BsmBI CGTCTC 1 cut(s) 164
BsmFI GGGAC 1 cut(s) 890
BsnI GGCC 3 cut(s) 290, 581, 917
Bso31I GGTCTC 1 cut(s) 169
Bsp1286I GDGCHC 1 cut(s) 927
Bsp1407I TGTACA 2 cut(s) 728, 1090
Bsp143I GATC 1 cut(s) 718
Bsp19I CCATGG 2 cut(s) 219, 460
BspACI CCGC 6 cut(s) 29, 50, 132, 705, 826, 918
BspANI GGCC 3 cut(s) 290, 581, 917
BspHI TCATGA 1 cut(s) 451
BspLI GGNNCC 1 cut(s) 751
BspMAI CTGCAG 2 cut(s) 477, 1188
BspQI GCTCTTC 2 cut(s) 431, 1094
BspTNI GGTCTC 1 cut(s) 169
BsrBI CCGCTC 1 cut(s) 31
BsrGI TGTACA 2 cut(s) 728, 1090
BsrI ACTGG 1 cut(s) 503
BssECI CCNNGG 3 cut(s) 45, 219, 460
BssMI GATC 1 cut(s) 718
BssNI GRCGYC 2 cut(s) 5, 237
BssT1I CCWWGG 3 cut(s) 45, 219, 460
Bst2UI CCWGG 1 cut(s) 902
Bst4CI ACNGT 4 cut(s) 180, 536, 770, 1127
Bst6I CTCTTC 4 cut(s) 114, 431, 507, 1094
BstACI GRCGYC 2 cut(s) 5, 237
BstAPI GCANNNNNTGC 1 cut(s) 599
BstAUI TGTACA 2 cut(s) 728, 1090
BstC8I GCNNGC 3 cut(s) 232, 740, 984
BstDEI CTNAG 2 cut(s) 410, 528
BstDSI CCRYGG 2 cut(s) 219, 460
BstF5I GGATG 5 cut(s) 23, 215, 308, 342, 593
BstH2I RGCGCY 1 cut(s) 56
BstHHI GCGC 2 cut(s) 55, 895
BstKTI GATC 1 cut(s) 721
BstMAI GTCTC 2 cut(s) 164, 169
BstMBI GATC 1 cut(s) 718
BstMWI GCNNNNNNNGC 4 cut(s) 221, 481, 599, 825
BstNI CCWGG 1 cut(s) 902
BstNSI RCATGY 3 cut(s) 670, 781, 986
BstSCI CCNGG 2 cut(s) 507, 900
BstSFI CTRYAG 4 cut(s) 225, 473, 967, 1184
BstV1I GCAGC 5 cut(s) 459, 722, 1036, 1039, 1198
BstV2I GAAGAC 3 cut(s) 79, 577, 669
BstX2I RGATCY 1 cut(s) 718
BstYI RGATCY 1 cut(s) 718
Bsu36I CCTNAGG 1 cut(s) 528
BsuI GTATCC 1 cut(s) 202
BsuRI GGCC 3 cut(s) 290, 581, 917
BtgI CCRYGG 2 cut(s) 219, 460
BtgZI GCGATG 1 cut(s) 1297
BtrI CACGTC 1 cut(s) 61
BtsCI GGATG 5 cut(s) 23, 215, 308, 342, 593
BtsIMutI CAGTG 2 cut(s) 775, 1123
Cac8I GCNNGC 3 cut(s) 232, 740, 984
CciI TCATGA 1 cut(s) 451
CfoI GCGC 2 cut(s) 55, 895
Cfr13I GGNCC 1 cut(s) 26
CpoI CGGWCCG 1 cut(s) 26
Csp6I GTAC 3 cut(s) 22, 729, 1091
CspI CGGWCCG 1 cut(s) 26
CviAII CATG 9 cut(s) 220, 452, 461, 667, 778, 833, 862, 963, 983
CviQI GTAC 3 cut(s) 22, 729, 1091
DdeI CTNAG 2 cut(s) 410, 528
DpnI GATC 1 cut(s) 720
DpnII GATC 1 cut(s) 718
DrdI GACNNNNNNGTC 1 cut(s) 671
DseDI GACNNNNNNGTC 1 cut(s) 671
Eam1104I CTCTTC 4 cut(s) 114, 431, 507, 1094
EarI CTCTTC 4 cut(s) 114, 431, 507, 1094
EciI GGCGGA 1 cut(s) 147
Ecl136II GAGCTC 1 cut(s) 925
Eco130I CCWWGG 3 cut(s) 45, 219, 460
Eco24I GRGCYC 1 cut(s) 927
Eco31I GGTCTC 1 cut(s) 169
Eco32I GATATC 1 cut(s) 154
Eco47I GGWCC 1 cut(s) 26
Eco53kI GAGCTC 1 cut(s) 925
Eco57I CTGAAG 2 cut(s) 95, 1273
Eco81I CCTNAGG 1 cut(s) 528
EcoICRI GAGCTC 1 cut(s) 925
EcoRII CCWGG 1 cut(s) 900
EcoRV GATATC 1 cut(s) 154
EcoT14I CCWWGG 3 cut(s) 45, 219, 460
EcoT22I ATGCAT 1 cut(s) 595
EcoT38I GRGCYC 1 cut(s) 927
ErhI CCWWGG 3 cut(s) 45, 219, 460
Esp3I CGTCTC 1 cut(s) 164
FaeI CATG 9 cut(s) 223, 455, 464, 670, 781, 836, 865, 966, 986
FalI AAGNNNNNCTT 6 cut(s) 393, 425, 569, 601, 1088, 1120
FaqI GGGAC 1 cut(s) 890
FatI CATG 9 cut(s) 219, 451, 460, 666, 777, 832, 861, 962, 982
FblI GTMKAC 1 cut(s) 322
Fnu4HI GCNGC 7 cut(s) 51, 473, 736, 918, 1050, 1053, 1187
FokI GGATG 5 cut(s) 30, 202, 295, 329, 580
FriOI GRGCYC 1 cut(s) 927
Fsp4HI GCNGC 7 cut(s) 51, 473, 736, 918, 1050, 1053, 1187
GlaI GCGC 2 cut(s) 54, 894
GluI GCNGC 7 cut(s) 51, 473, 736, 918, 1050, 1053, 1187
GsuI CTGGAG 1 cut(s) 1008
HaeII RGCGCY 1 cut(s) 56
HaeIII GGCC 3 cut(s) 290, 581, 917
HapII CCGG 1 cut(s) 509
HhaI GCGC 2 cut(s) 55, 895
Hin1I GRCGYC 2 cut(s) 5, 237
Hin1II CATG 9 cut(s) 223, 455, 464, 670, 781, 836, 865, 966, 986
Hin6I GCGC 2 cut(s) 53, 893
HinP1I GCGC 2 cut(s) 53, 893
HindIII AAGCTT 2 cut(s) 407, 817
HinfI GANTC 7 cut(s) 103, 338, 569, 881, 954, 1009, 1165
HpaII CCGG 1 cut(s) 509
HphI GGTGA 3 cut(s) 287, 320, 442
Hpy166II GTNNAC 4 cut(s) 94, 323, 621, 1093
Hpy188I TCNGA 9 cut(s) 17, 146, 814, 886, 908, 1087, 1173, 1211, 1292
Hpy188III TCNNGA 3 cut(s) 452, 492, 1133
Hpy8I GTNNAC 4 cut(s) 94, 323, 621, 1093
Hpy99I CGWCG 3 cut(s) 65, 239, 242
HpyAV CCTTC 2 cut(s) 839, 868
HpyCH4III ACNGT 4 cut(s) 180, 536, 770, 1127
HpyCH4IV ACGT 3 cut(s) 60, 72, 237
HpyCH4V TGCA 6 cut(s) 475, 576, 593, 800, 1186, 1276
HpyF10VI GCNNNNNNNGC 4 cut(s) 221, 481, 599, 825
HpyF3I CTNAG 2 cut(s) 410, 528
HpySE526I ACGT 3 cut(s) 60, 72, 237
Hsp92I GRCGYC 2 cut(s) 5, 237
Hsp92II CATG 9 cut(s) 223, 455, 464, 670, 781, 836, 865, 966, 986
HspAI GCGC 2 cut(s) 53, 893
Kzo9I GATC 1 cut(s) 718
LguI GCTCTTC 2 cut(s) 431, 1094
LmnI GCTCC 2 cut(s) 510, 760
Lsp1109I GCAGC 5 cut(s) 459, 722, 1036, 1039, 1198
LweI GCATC 5 cut(s) 224, 602, 1041, 1269, 1274
MaeII ACGT 3 cut(s) 60, 72, 237
MaeIII GTNAC 2 cut(s) 246, 648
MalI GATC 1 cut(s) 720
MbiI CCGCTC 1 cut(s) 31
MboI GATC 1 cut(s) 718
MflI RGATCY 1 cut(s) 718
MhlI GDGCHC 1 cut(s) 927
MluCI AATT 4 cut(s) 119, 551, 606, 1021
MlyI GAGTC 2 cut(s) 97, 963
MnlI CCTC 8 cut(s) 117, 130, 280, 367, 472, 510, 854, 1248
Mph1103I ATGCAT 1 cut(s) 595
MroXI GAANNNNTTC 1 cut(s) 609
MseI TTAA 2 cut(s) 783, 822
MspA1I CMGCKG 1 cut(s) 472
MspI CCGG 1 cut(s) 509
MspR9I CCNGG 2 cut(s) 509, 902
MvaI CCWGG 1 cut(s) 902
MwoI GCNNNNNNNGC 4 cut(s) 221, 481, 599, 825
NciI CCSGG 1 cut(s) 509
NcoI CCATGG 2 cut(s) 219, 460
NdeII GATC 1 cut(s) 718
NlaIII CATG 9 cut(s) 223, 455, 464, 670, 781, 836, 865, 966, 986
NlaIV GGNNCC 1 cut(s) 751
NsiI ATGCAT 1 cut(s) 595
NspI RCATGY 3 cut(s) 670, 781, 986
PaeI GCATGC 1 cut(s) 986
PagI TCATGA 1 cut(s) 451
PciI ACATGT 2 cut(s) 666, 777
PciSI GCTCTTC 2 cut(s) 431, 1094
PcsI WCGNNNNNNNCGW 1 cut(s) 69
PdmI GAANNNNTTC 1 cut(s) 609
PfeI GAWTC 5 cut(s) 338, 569, 881, 1009, 1165
PfoI TCCNGGA 1 cut(s) 507
PkrI GCNGC 7 cut(s) 52, 474, 737, 919, 1051, 1054, 1188
PleI GAGTC 2 cut(s) 97, 962
PpsI GAGTC 2 cut(s) 97, 962
PscI ACATGT 2 cut(s) 666, 777
Psp124BI GAGCTC 1 cut(s) 927
Psp6I CCWGG 1 cut(s) 900
PspGI CCWGG 1 cut(s) 900
PspN4I GGNNCC 1 cut(s) 751
PspPI GGNCC 1 cut(s) 26
PstI CTGCAG 2 cut(s) 477, 1188
PsuI RGATCY 1 cut(s) 718
PvuII CAGCTG 1 cut(s) 472
RsaI GTAC 3 cut(s) 23, 730, 1092
RsaNI GTAC 3 cut(s) 22, 729, 1091
Rsr2I CGGWCCG 1 cut(s) 26
RsrII CGGWCCG 1 cut(s) 26
SacI GAGCTC 1 cut(s) 927
SapI GCTCTTC 2 cut(s) 431, 1094
SaqAI TTAA 2 cut(s) 783, 822
SatI GCNGC 7 cut(s) 51, 473, 736, 918, 1050, 1053, 1187
Sau3AI GATC 1 cut(s) 718
Sau96I GGNCC 1 cut(s) 26
SchI GAGTC 2 cut(s) 97, 963
ScrFI CCNGG 2 cut(s) 509, 902
SduI GDGCHC 1 cut(s) 927
SfaNI GCATC 5 cut(s) 224, 602, 1041, 1269, 1274
SfcI CTRYAG 4 cut(s) 225, 473, 967, 1184
SinI GGWCC 1 cut(s) 26
SmlI CTYRAG 1 cut(s) 490
SmoI CTYRAG 1 cut(s) 490
SphI GCATGC 1 cut(s) 986
Sse9I AATT 4 cut(s) 119, 551, 606, 1021
SsiI CCGC 6 cut(s) 29, 50, 132, 705, 826, 918
SstI GAGCTC 1 cut(s) 927
StyD4I CCNGG 2 cut(s) 507, 900
StyI CCWWGG 3 cut(s) 45, 219, 460
TaaI ACNGT 4 cut(s) 180, 536, 770, 1127
TaiI ACGT 3 cut(s) 63, 75, 240
TaqI TCGA 1 cut(s) 36
TasI AATT 4 cut(s) 119, 551, 606, 1021
TatI WGTACW 2 cut(s) 728, 1090
TauI GCSGC 2 cut(s) 53, 920
TfiI GAWTC 5 cut(s) 338, 569, 881, 1009, 1165
Tru1I TTAA 2 cut(s) 783, 822
Tru9I TTAA 2 cut(s) 783, 822
TscAI CASTG 2 cut(s) 775, 1130
TseI GCWGC 5 cut(s) 472, 735, 1049, 1052, 1186
TspDTI ATGAA 4 cut(s) 821, 850, 951, 1071
TspGWI ACGGA 4 cut(s) 39, 164, 178, 586
TspRI CASTG 2 cut(s) 775, 1130
VpaK11BI GGWCC 1 cut(s) 26
XapI RAATTY 1 cut(s) 606
XceI RCATGY 3 cut(s) 670, 781, 986
XmiI GTMKAC 1 cut(s) 322
XmnI GAANNNNTTC 1 cut(s) 609
ZraI GACGTC 1 cut(s) 238
Zsp2I ATGCAT 1 cut(s) 595
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.