Rh6AG363300

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0010529
Physical Location & Seq
Forward (+)
56256648 .. 56259645
2998 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG363300.1

Sequence Viewer

Length: 972 bp
ATGGTACGGACCGCTAATCGACCTGTCGAAGGCGGCGCTTCACATCGGCGACTTCGTTCAGCTGGTCGTCTTCATCCACCGAATCACTCCTCTTCAGGTATATACTTTCCGCCGTGTCGTTTTTCTCTTCTCCGTTTTCAATTAATGCTGAAAATGGGGGATTTCGTGTTTCCAAAGTATAAATTATCCAACGGCGGAGAAGTAATCCGGACCGACATCCAGGTCGGTGACGAAACGAGGCCGTTTTTCTCCGTATCCCTATGGCAAAAGCAAATGGGATCCATGGCCGTCTACGGCGACGTCGTTTTGTTACAAAATGTGAAGATAGTAAAATATCGTGATGTTGTTGAAGCTAAAACCGTGACACAGTCGTCTTTACACCGTCTACTTCATCCTTATGAATCCATTTTAACTAAAGGTGTGGATGAGCTGATAGAGGGGTGTCGAGTTGGGATAGCTACCAAGGAGAAGCTAAGAAAGGTAGTAGAATGGGTGAAGAAGAGCAACACTCGTCAGTTCCGCGGCTCTCAGCTGCAGCAGAGGCAATTCCCGAGGAACTGGAAGCTGCCAGAAGAGAGTAAAAAACCTGAGGATTGTTGCTCAGTTTCGCGGTTATCACATCTAACTAATTCTTGCAAGGCAGTGTTTGATGCATCTGTTGCCGAAATTTTTATGCCACAAGCTGAATGTGAGTCTTGGTGTGACAAGGAAGACATGTTTGTAAGTAGGAGACTGTGTAAAAAAGGAGATCCTGGTTTGGTAAGACATCTTATTTGTACAGGTTGCCGGATATGCGGTTCCCCCTTGGAGGCCAACAGTGAAAACACGTCTAAGCAAAATGCAGCTGCCCTTTACTGTTTGGAAAGCTCGAACCGCCTTCATGTTATAAGCCTCATATACAGGCCTTTCATGGTAGGGTTTTGTTTTCCCCCACTGATTTTATTTTTTGAGTTTTACCCTTTTTGTAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

323

Amino Acids

36.84

Weight (kDa)

9.29

Isoelectric Point (pI)

47.06

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 887
AasI GACNNNNNNGTC 2 cut(s) 221, 370
AatII GACGTC 1 cut(s) 303
AccI GTMKAC 2 cut(s) 291, 385
AccII CGCG 2 cut(s) 522, 610
AccIII TCCGGA 1 cut(s) 207
AciI CCGC 9 cut(s) 12, 33, 110, 195, 520, 522, 610, 795, 874
AclWI GGATC 3 cut(s) 273, 286, 743
AcoI YGGCCR 1 cut(s) 285
AcsI RAATTY 1 cut(s) 666
AcuI CTGAAG 1 cut(s) 78
AcyI GRCGYC 1 cut(s) 300
AfaI GTAC 2 cut(s) 6, 778
AfiI CCNNNNNNNGG 2 cut(s) 29, 808
AflIII ACRYGT 2 cut(s) 714, 825
AgsI TTSAA 2 cut(s) 140, 350
AjiI CACGTC 1 cut(s) 828
AjnI CCWGG 2 cut(s) 219, 751
AloI GAACNNNNNNTCC 2 cut(s) 781, 813
Alw26I GTCTC 1 cut(s) 724
AlwI GGATC 3 cut(s) 273, 286, 743
Ama87I CYCGRG 1 cut(s) 550
Aor13HI TCCGGA 1 cut(s) 207
AoxI GGCC 4 cut(s) 239, 285, 810, 902
ApeKI GCWGC 5 cut(s) 532, 535, 565, 842, 845
ApoI RAATTY 1 cut(s) 666
ArsI GACNNNNNNTTYG 2 cut(s) 756, 788
AseI ATTAAT 1 cut(s) 143
AspLEI GCGC 1 cut(s) 38
AspS9I GGNCC 2 cut(s) 9, 210
AsuHPI GGTGA 2 cut(s) 239, 505
AvaI CYCGRG 1 cut(s) 550
AvaII GGWCC 2 cut(s) 9, 210
AxyI CCTNAGG 1 cut(s) 588
BamHI GGATCC 1 cut(s) 278
BbsI GAAGAC 2 cut(s) 62, 717
BbvI GCAGC 5 cut(s) 519, 547, 552, 832, 854
BceAI ACGGC 5 cut(s) 97, 208, 226, 272, 310
BciT130I CCWGG 2 cut(s) 221, 753
BciVI GTATCC 1 cut(s) 265
BcoDI GTCTC 1 cut(s) 724
BfmI CTRYAG 1 cut(s) 533
BfoI RGCGCY 1 cut(s) 39
BfuI GTATCC 1 cut(s) 265
BisI GCNGC 7 cut(s) 34, 523, 533, 536, 566, 843, 846
BlsI GCNGC 7 cut(s) 35, 524, 534, 537, 567, 844, 847
Bme1390I CCNGG 2 cut(s) 221, 753
Bme18I GGWCC 2 cut(s) 9, 210
BmeT110I CYCGRG 1 cut(s) 550
BmgBI CACGTC 1 cut(s) 828
BmgT120I GGNCC 2 cut(s) 9, 210
BmiI GGNNCC 2 cut(s) 280, 799
BmrFI CCNGG 2 cut(s) 221, 753
BmsI GCATC 2 cut(s) 640, 662
BpiI GAAGAC 2 cut(s) 62, 717
BplI GAGNNNNNCTC 2 cut(s) 493, 525
BsaHI GRCGYC 1 cut(s) 300
BsaJI CCNNGG 5 cut(s) 282, 462, 520, 551, 804
BsaWI WCCGGW 1 cut(s) 207
BsaXI ACNNNNNCTCC 2 cut(s) 721, 751
Bsc4I CCNNNNNNNGG 2 cut(s) 29, 808
Bse1I ACTGG 1 cut(s) 563
Bse21I CCTNAGG 1 cut(s) 588
BseAI TCCGGA 1 cut(s) 207
BseBI CCWGG 2 cut(s) 221, 753
BseDI CCNNGG 5 cut(s) 282, 462, 520, 551, 804
BseGI GGATG 4 cut(s) 73, 216, 391, 430
BseLI CCNNNNNNNGG 2 cut(s) 29, 808
BseMII CTCAG 3 cut(s) 542, 579, 615
BseNI ACTGG 1 cut(s) 563
BseRI GAGGAG 1 cut(s) 79
BseXI GCAGC 5 cut(s) 519, 547, 552, 832, 854
Bsh1236I CGCG 2 cut(s) 522, 610
BshFI GGCC 4 cut(s) 241, 287, 812, 904
BsiHKCI CYCGRG 1 cut(s) 550
BsiSI CCGG 2 cut(s) 208, 787
BslI CCNNNNNNNGG 2 cut(s) 29, 808
BsmAI GTCTC 1 cut(s) 724
BsnI GGCC 4 cut(s) 241, 287, 812, 904
BsoBI CYCGRG 1 cut(s) 550
Bsp13I TCCGGA 1 cut(s) 207
Bsp1407I TGTACA 1 cut(s) 776
Bsp143I GATC 2 cut(s) 278, 748
Bsp19I CCATGG 1 cut(s) 282
BspACI CCGC 9 cut(s) 12, 33, 110, 195, 520, 522, 610, 795, 874
BspANI GGCC 4 cut(s) 241, 287, 812, 904
BspCNI CTCAG 3 cut(s) 541, 580, 614
BspEI TCCGGA 1 cut(s) 207
BspFNI CGCG 2 cut(s) 522, 610
BspLI GGNNCC 2 cut(s) 280, 799
BspMAI CTGCAG 1 cut(s) 537
BspPI GGATC 3 cut(s) 273, 286, 743
BspQI GCTCTTC 1 cut(s) 494
BsrGI TGTACA 1 cut(s) 776
BsrI ACTGG 1 cut(s) 563
BssECI CCNNGG 5 cut(s) 282, 462, 520, 551, 804
BssMI GATC 2 cut(s) 278, 748
BssNI GRCGYC 1 cut(s) 300
BssT1I CCWWGG 3 cut(s) 282, 462, 804
Bst2UI CCWGG 2 cut(s) 221, 753
Bst4CI ACNGT 6 cut(s) 361, 369, 383, 735, 818, 857
Bst6I CTCTTC 4 cut(s) 97, 132, 494, 567
BstACI GRCGYC 1 cut(s) 300
BstAPI GCANNNNNTGC 1 cut(s) 659
BstAUI TGTACA 1 cut(s) 776
BstDEI CTNAG 5 cut(s) 473, 528, 588, 601, 831
BstDSI CCRYGG 2 cut(s) 282, 520
BstENI CCTNNNNNAGG 1 cut(s) 27
BstF5I GGATG 4 cut(s) 73, 216, 391, 430
BstFNI CGCG 2 cut(s) 522, 610
BstH2I RGCGCY 1 cut(s) 39
BstHHI GCGC 1 cut(s) 38
BstKTI GATC 2 cut(s) 281, 751
BstMAI GTCTC 1 cut(s) 724
BstMBI GATC 2 cut(s) 278, 748
BstMWI GCNNNNNNNGC 4 cut(s) 541, 659, 792, 873
BstNI CCWGG 2 cut(s) 221, 753
BstNSI RCATGY 1 cut(s) 718
BstSCI CCNGG 2 cut(s) 219, 751
BstSFI CTRYAG 1 cut(s) 533
BstUI CGCG 2 cut(s) 522, 610
BstV1I GCAGC 5 cut(s) 519, 547, 552, 832, 854
BstV2I GAAGAC 2 cut(s) 62, 717
BstX2I RGATCY 2 cut(s) 278, 748
BstYI RGATCY 2 cut(s) 278, 748
Bsu36I CCTNAGG 1 cut(s) 588
BsuI GTATCC 1 cut(s) 265
BsuRI GGCC 4 cut(s) 241, 287, 812, 904
BtgI CCRYGG 2 cut(s) 282, 520
BtrI CACGTC 1 cut(s) 828
BtsCI GGATG 4 cut(s) 73, 216, 391, 430
BtsI GCAGTG 1 cut(s) 648
BtsIMutI CAGTG 3 cut(s) 648, 823, 932
CfoI GCGC 1 cut(s) 38
Cfr13I GGNCC 2 cut(s) 9, 210
Cfr42I CCGCGG 1 cut(s) 523
CpoI CGGWCCG 2 cut(s) 9, 210
Csp6I GTAC 2 cut(s) 5, 777
CspI CGGWCCG 2 cut(s) 9, 210
CviAII CATG 4 cut(s) 283, 715, 881, 910
CviQI GTAC 2 cut(s) 5, 777
DdeI CTNAG 5 cut(s) 473, 528, 588, 601, 831
DpnI GATC 2 cut(s) 280, 750
DpnII GATC 2 cut(s) 278, 748
DrdI GACNNNNNNGTC 2 cut(s) 221, 370
DseDI GACNNNNNNGTC 2 cut(s) 221, 370
EaeI YGGCCR 1 cut(s) 285
Eam1104I CTCTTC 4 cut(s) 97, 132, 494, 567
EarI CTCTTC 4 cut(s) 97, 132, 494, 567
EciI GGCGGA 2 cut(s) 99, 210
Eco130I CCWWGG 3 cut(s) 282, 462, 804
Eco147I AGGCCT 1 cut(s) 904
Eco47I GGWCC 2 cut(s) 9, 210
Eco57I CTGAAG 1 cut(s) 78
Eco81I CCTNAGG 1 cut(s) 588
Eco88I CYCGRG 1 cut(s) 550
EcoNI CCTNNNNNAGG 1 cut(s) 27
EcoRII CCWGG 2 cut(s) 219, 751
EcoT14I CCWWGG 3 cut(s) 282, 462, 804
EcoT22I ATGCAT 1 cut(s) 655
ErhI CCWWGG 3 cut(s) 282, 462, 804
FaeI CATG 4 cut(s) 286, 718, 884, 913
FatI CATG 4 cut(s) 282, 714, 880, 909
FblI GTMKAC 2 cut(s) 291, 385
Fnu4HI GCNGC 7 cut(s) 34, 523, 533, 536, 566, 843, 846
FokI GGATG 4 cut(s) 60, 203, 378, 437
Fsp4HI GCNGC 7 cut(s) 34, 523, 533, 536, 566, 843, 846
GlaI GCGC 1 cut(s) 37
GluI GCNGC 7 cut(s) 34, 523, 533, 536, 566, 843, 846
HaeII RGCGCY 1 cut(s) 39
HaeIII GGCC 4 cut(s) 241, 287, 812, 904
HapII CCGG 2 cut(s) 208, 787
HhaI GCGC 1 cut(s) 38
Hin1I GRCGYC 1 cut(s) 300
Hin1II CATG 4 cut(s) 286, 718, 884, 913
Hin6I GCGC 1 cut(s) 36
HinP1I GCGC 1 cut(s) 36
HinfI GANTC 3 cut(s) 82, 401, 692
HpaII CCGG 2 cut(s) 208, 787
HphI GGTGA 2 cut(s) 239, 505
Hpy166II GTNNAC 2 cut(s) 292, 386
Hpy188III TCNNGA 3 cut(s) 208, 338, 550
Hpy8I GTNNAC 2 cut(s) 292, 386
Hpy99I CGWCG 2 cut(s) 302, 305
HpyAV CCTTC 2 cut(s) 23, 887
HpyCH4III ACNGT 6 cut(s) 361, 369, 383, 735, 818, 857
HpyCH4IV ACGT 2 cut(s) 300, 827
HpyCH4V TGCA 4 cut(s) 535, 636, 653, 842
HpyF10VI GCNNNNNNNGC 4 cut(s) 541, 659, 792, 873
HpyF3I CTNAG 5 cut(s) 473, 528, 588, 601, 831
HpySE526I ACGT 2 cut(s) 300, 827
Hsp92I GRCGYC 1 cut(s) 300
Hsp92II CATG 4 cut(s) 286, 718, 884, 913
HspAI GCGC 1 cut(s) 36
Kpn2I TCCGGA 1 cut(s) 207
KspI CCGCGG 1 cut(s) 523
Kzo9I GATC 2 cut(s) 278, 748
LguI GCTCTTC 1 cut(s) 494
Lsp1109I GCAGC 5 cut(s) 519, 547, 552, 832, 854
LweI GCATC 2 cut(s) 640, 662
MaeII ACGT 2 cut(s) 300, 827
MaeIII GTNAC 4 cut(s) 227, 309, 361, 701
MalI GATC 2 cut(s) 280, 750
MboI GATC 2 cut(s) 278, 748
MboII GAAGA 8 cut(s) 62, 84, 119, 334, 508, 511, 584, 722
MflI RGATCY 2 cut(s) 278, 748
MluCI AATT 6 cut(s) 140, 182, 545, 628, 666, 967
MlyI GAGTC 1 cut(s) 701
MmeI TCCRAC 1 cut(s) 213
MnlI CCTC 8 cut(s) 100, 231, 430, 534, 546, 583, 802, 902
Mph1103I ATGCAT 1 cut(s) 655
MroI TCCGGA 1 cut(s) 207
MseI TTAA 2 cut(s) 143, 410
MslI CAYNNNNRTG 1 cut(s) 396
MspA1I CMGCKG 4 cut(s) 62, 522, 532, 845
MspI CCGG 2 cut(s) 208, 787
MspR9I CCNGG 2 cut(s) 221, 753
MvaI CCWGG 2 cut(s) 221, 753
MvnI CGCG 2 cut(s) 522, 610
MwoI GCNNNNNNNGC 4 cut(s) 541, 659, 792, 873
NcoI CCATGG 1 cut(s) 282
NdeII GATC 2 cut(s) 278, 748
NlaIII CATG 4 cut(s) 286, 718, 884, 913
NlaIV GGNNCC 2 cut(s) 280, 799
NmuCI GTSAC 3 cut(s) 227, 361, 701
NsiI ATGCAT 1 cut(s) 655
NspI RCATGY 1 cut(s) 718
PceI AGGCCT 1 cut(s) 904
PciI ACATGT 1 cut(s) 714
PciSI GCTCTTC 1 cut(s) 494
PcsI WCGNNNNNNNCGW 2 cut(s) 52, 300
PfeI GAWTC 2 cut(s) 82, 401
PflFI GACNNNGTC 1 cut(s) 367
PkrI GCNGC 7 cut(s) 35, 524, 534, 537, 567, 844, 847
PleI GAGTC 1 cut(s) 700
PpsI GAGTC 1 cut(s) 700
PscI ACATGT 1 cut(s) 714
PshBI ATTAAT 1 cut(s) 143
PsiI TTATAA 1 cut(s) 887
Psp6I CCWGG 2 cut(s) 219, 751
PspGI CCWGG 2 cut(s) 219, 751
PspN4I GGNNCC 2 cut(s) 280, 799
PspPI GGNCC 2 cut(s) 9, 210
PstI CTGCAG 1 cut(s) 537
PsuI RGATCY 2 cut(s) 278, 748
PsyI GACNNNGTC 1 cut(s) 367
PvuII CAGCTG 3 cut(s) 62, 532, 845
RsaI GTAC 2 cut(s) 6, 778
RsaNI GTAC 2 cut(s) 5, 777
RseI CAYNNNNRTG 1 cut(s) 396
Rsr2I CGGWCCG 2 cut(s) 9, 210
RsrII CGGWCCG 2 cut(s) 9, 210
SacII CCGCGG 1 cut(s) 523
SapI GCTCTTC 1 cut(s) 494
SaqAI TTAA 2 cut(s) 143, 410
SatI GCNGC 7 cut(s) 34, 523, 533, 536, 566, 843, 846
Sau3AI GATC 2 cut(s) 278, 748
Sau96I GGNCC 2 cut(s) 9, 210
SchI GAGTC 1 cut(s) 701
ScrFI CCNGG 2 cut(s) 221, 753
SfaNI GCATC 2 cut(s) 640, 662
SfcI CTRYAG 1 cut(s) 533
Sfr303I CCGCGG 1 cut(s) 523
SgrBI CCGCGG 1 cut(s) 523
SinI GGWCC 2 cut(s) 9, 210
SmiMI CAYNNNNRTG 1 cut(s) 396
Sse9I AATT 6 cut(s) 140, 182, 545, 628, 666, 967
SseBI AGGCCT 1 cut(s) 904
SsiI CCGC 9 cut(s) 12, 33, 110, 195, 520, 522, 610, 795, 874
StuI AGGCCT 1 cut(s) 904
StyD4I CCNGG 2 cut(s) 219, 751
StyI CCWWGG 3 cut(s) 282, 462, 804
TaaI ACNGT 6 cut(s) 361, 369, 383, 735, 818, 857
TaiI ACGT 2 cut(s) 303, 830
TaqI TCGA 4 cut(s) 19, 27, 445, 869
TaqII GACCGA 1 cut(s) 227
TasI AATT 6 cut(s) 140, 182, 545, 628, 666, 967
TatI WGTACW 1 cut(s) 776
TauI GCSGC 2 cut(s) 36, 525
TfiI GAWTC 2 cut(s) 82, 401
Tru1I TTAA 2 cut(s) 143, 410
Tru9I TTAA 2 cut(s) 143, 410
TscAI CASTG 3 cut(s) 648, 823, 939
TseFI GTSAC 3 cut(s) 227, 361, 701
TseI GCWGC 5 cut(s) 532, 535, 565, 842, 845
Tsp45I GTSAC 3 cut(s) 227, 361, 701
TspDTI ATGAA 5 cut(s) 62, 380, 414, 869, 898
TspGWI ACGGA 3 cut(s) 22, 122, 241
TspRI CASTG 3 cut(s) 648, 823, 939
Tth111I GACNNNGTC 1 cut(s) 367
VpaK11BI GGWCC 2 cut(s) 9, 210
VspI ATTAAT 1 cut(s) 143
XagI CCTNNNNNAGG 1 cut(s) 27
XapI RAATTY 1 cut(s) 666
XceI RCATGY 1 cut(s) 718
XmiI GTMKAC 2 cut(s) 291, 385
ZraI GACGTC 1 cut(s) 301
Zsp2I ATGCAT 1 cut(s) 655
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.