Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8129814.1

Orthogroup ID

OG0010529

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 629

Gene Structure 629 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8129814.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 478 bp

ctaaaaccgtgacacagtcgtctttacaccgtctacttcatccttatgaatccattttaactaaaggtgtggatgagttgatagaggggtgtcgagttgggatagctgccaaggagaagctaagaaaggtagtagaatgggtgaagaagagcaacactcgtcagttccgcggctctcagctgcagcagaggcaattcccgaggaactggaagctgccagaagagagtaaaaaacctgaggattgttgctcagtttcgcggttatcacatctaactaattcttgcaaggcagtgtttgatgcatctgttgctgaaatttttatgccacaagcagaatgtgagtcttggtgtgacaaggaagacatgtttgtaagtaggagactgtgtaaaaaaggagatcctggtttggtaagacatcttatttgtacaggttgccggatatgcggttcccccttggaggccaacaggtatggatcgga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

158

Amino Acids

17.99

Weight (kDa)

9.06

Isoelectric Point (pI)

49.12

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010529)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g26511 FvH4_2g26511
malus_domestica	MD08G1168100.v1.1
prunus_persica	Prupe.1G501800_v2.0.a1 Prupe.1G501800_v2.0.a1 Prupe.1G501800_v2.0.a1 Prupe.1G501800_v2.0.a1 Prupe.1G501800_v2.0.a1
pyrus_communis	pycom08g14340
rosa_chinensis	RchiOBHm_Chr6g0295331
rosa_laevigata	RLG00000011812
rosa_multiflora	Rmu_co8129814.1_g000001 Rmu_sc0003058.1_g000016
rosa_roxburghii	Rroxscaffold_171G00441490 Rroxscaffold_7G00172570
rosa_rugosa	Rorug06G0250000
rosa_samantha	Rh6AG363300 Rh6BG371400 Rh6CG377900 Rh6DG364000
rosa_wichuraiana	Rw6G031700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	18
AccI	GTMKAC	1 cut(s)	33
AccII	CGCG	2 cut(s)	170, 258
AciI	CCGC	4 cut(s)	168, 170, 258, 443
AclWI	GGATC	1 cut(s)	391
AcsI	RAATTY	1 cut(s)	314
AfaI	GTAC	1 cut(s)	426
AfiI	CCNNNNNNNGG	1 cut(s)	456
AflIII	ACRYGT	1 cut(s)	362
AjnI	CCWGG	1 cut(s)	399
AloI	GAACNNNNNNTCC	2 cut(s)	429, 461
AluBI	AGCT	4 cut(s)	106, 120, 180, 213
AluI	AGCT	4 cut(s)	106, 120, 180, 213
Alw26I	GTCTC	1 cut(s)	372
AlwI	GGATC	1 cut(s)	391
Ama87I	CYCGRG	1 cut(s)	198
AoxI	GGCC	1 cut(s)	458
ApeKI	GCWGC	4 cut(s)	106, 180, 183, 213
ApoI	RAATTY	1 cut(s)	314
ArsI	GACNNNNNNTTYG	2 cut(s)	404, 436
AsuHPI	GGTGA	1 cut(s)	153
AvaI	CYCGRG	1 cut(s)	198
AxyI	CCTNAGG	1 cut(s)	236
BbsI	GAAGAC	1 cut(s)	365
BbvI	GCAGC	4 cut(s)	93, 167, 195, 200
BciT130I	CCWGG	1 cut(s)	401
BcoDI	GTCTC	1 cut(s)	372
BfmI	CTRYAG	1 cut(s)	181
BisI	GCNGC	5 cut(s)	107, 171, 181, 184, 214
BlsI	GCNGC	5 cut(s)	108, 172, 182, 185, 215
Bme1390I	CCNGG	1 cut(s)	401
BmeT110I	CYCGRG	1 cut(s)	198
BmiI	GGNNCC	1 cut(s)	447
BmrFI	CCNGG	1 cut(s)	401
BmsI	GCATC	2 cut(s)	288, 310
BpiI	GAAGAC	1 cut(s)	365
BplI	GAGNNNNNCTC	2 cut(s)	141, 173
BsaJI	CCNNGG	4 cut(s)	110, 168, 199, 452
BsaXI	ACNNNNNCTCC	2 cut(s)	369, 399
Bsc4I	CCNNNNNNNGG	1 cut(s)	456
Bse1I	ACTGG	1 cut(s)	211
Bse21I	CCTNAGG	1 cut(s)	236
BseBI	CCWGG	1 cut(s)	401
BseDI	CCNNGG	4 cut(s)	110, 168, 199, 452
BseGI	GGATG	2 cut(s)	39, 78
BseLI	CCNNNNNNNGG	1 cut(s)	456
BseMII	CTCAG	3 cut(s)	190, 227, 263
BseNI	ACTGG	1 cut(s)	211
BseXI	GCAGC	4 cut(s)	93, 167, 195, 200
Bsh1236I	CGCG	2 cut(s)	170, 258
BshFI	GGCC	1 cut(s)	460
BsiHKCI	CYCGRG	1 cut(s)	198
BsiSI	CCGG	1 cut(s)	435
BslI	CCNNNNNNNGG	1 cut(s)	456
BsmAI	GTCTC	1 cut(s)	372
BsnI	GGCC	1 cut(s)	460
BsoBI	CYCGRG	1 cut(s)	198
Bsp1407I	TGTACA	1 cut(s)	424
Bsp143I	GATC	2 cut(s)	396, 472
BspACI	CCGC	4 cut(s)	168, 170, 258, 443
BspANI	GGCC	1 cut(s)	460
BspCNI	CTCAG	3 cut(s)	189, 228, 262
BspFNI	CGCG	2 cut(s)	170, 258
BspLI	GGNNCC	1 cut(s)	447
BspMAI	CTGCAG	1 cut(s)	185
BspPI	GGATC	1 cut(s)	391
BspQI	GCTCTTC	1 cut(s)	142
BsrGI	TGTACA	1 cut(s)	424
BsrI	ACTGG	1 cut(s)	211
BssECI	CCNNGG	4 cut(s)	110, 168, 199, 452
BssMI	GATC	2 cut(s)	396, 472
BssT1I	CCWWGG	2 cut(s)	110, 452
Bst2UI	CCWGG	1 cut(s)	401
Bst4CI	ACNGT	4 cut(s)	9, 17, 31, 383
Bst6I	CTCTTC	2 cut(s)	142, 215
BstAPI	GCANNNNNTGC	1 cut(s)	307
BstAUI	TGTACA	1 cut(s)	424
BstDEI	CTNAG	4 cut(s)	121, 176, 236, 249
BstDSI	CCRYGG	1 cut(s)	168
BstF5I	GGATG	2 cut(s)	39, 78
BstFNI	CGCG	2 cut(s)	170, 258
BstKTI	GATC	2 cut(s)	399, 475
BstMAI	GTCTC	1 cut(s)	372
BstMBI	GATC	2 cut(s)	396, 472
BstMWI	GCNNNNNNNGC	3 cut(s)	189, 307, 440
BstNI	CCWGG	1 cut(s)	401
BstNSI	RCATGY	1 cut(s)	366
BstSCI	CCNGG	1 cut(s)	399
BstSFI	CTRYAG	1 cut(s)	181
BstUI	CGCG	2 cut(s)	170, 258
BstV1I	GCAGC	4 cut(s)	93, 167, 195, 200
BstV2I	GAAGAC	1 cut(s)	365
BstX2I	RGATCY	1 cut(s)	396
BstYI	RGATCY	1 cut(s)	396
Bsu36I	CCTNAGG	1 cut(s)	236
BsuRI	GGCC	1 cut(s)	460
BtgI	CCRYGG	1 cut(s)	168
BtsCI	GGATG	2 cut(s)	39, 78
BtsI	GCAGTG	1 cut(s)	296
BtsIMutI	CAGTG	1 cut(s)	296
Cfr42I	CCGCGG	1 cut(s)	171
Csp6I	GTAC	1 cut(s)	425
CviAII	CATG	1 cut(s)	363
CviJI	RGCY	6 cut(s)	106, 120, 173, 180, 213, 460
CviKI_1	RGCY	6 cut(s)	106, 120, 173, 180, 213, 460
CviQI	GTAC	1 cut(s)	425
DdeI	CTNAG	4 cut(s)	121, 176, 236, 249
DpnI	GATC	2 cut(s)	398, 474
DpnII	GATC	2 cut(s)	396, 472
DrdI	GACNNNNNNGTC	1 cut(s)	18
DseDI	GACNNNNNNGTC	1 cut(s)	18
Eam1104I	CTCTTC	2 cut(s)	142, 215
EarI	CTCTTC	2 cut(s)	142, 215
Eco130I	CCWWGG	2 cut(s)	110, 452
Eco81I	CCTNAGG	1 cut(s)	236
Eco88I	CYCGRG	1 cut(s)	198
EcoRII	CCWGG	1 cut(s)	399
EcoT14I	CCWWGG	2 cut(s)	110, 452
EcoT22I	ATGCAT	1 cut(s)	303
ErhI	CCWWGG	2 cut(s)	110, 452
FaeI	CATG	1 cut(s)	366
FaiI	YATR	5 cut(s)	47, 322, 364, 441, 470
FatI	CATG	1 cut(s)	362
FblI	GTMKAC	1 cut(s)	33
Fnu4HI	GCNGC	5 cut(s)	107, 171, 181, 184, 214
FokI	GGATG	2 cut(s)	26, 85
Fsp4HI	GCNGC	5 cut(s)	107, 171, 181, 184, 214
GluI	GCNGC	5 cut(s)	107, 171, 181, 184, 214
HaeIII	GGCC	1 cut(s)	460
HapII	CCGG	1 cut(s)	435
Hin1II	CATG	1 cut(s)	366
HinfI	GANTC	2 cut(s)	49, 340
HpaII	CCGG	1 cut(s)	435
HphI	GGTGA	1 cut(s)	153
Hpy166II	GTNNAC	1 cut(s)	34
Hpy188I	TCNGA	1 cut(s)	477
Hpy188III	TCNNGA	1 cut(s)	198
Hpy8I	GTNNAC	1 cut(s)	34
HpyCH4III	ACNGT	4 cut(s)	9, 17, 31, 383
HpyCH4V	TGCA	3 cut(s)	183, 284, 301
HpyF10VI	GCNNNNNNNGC	3 cut(s)	189, 307, 440
HpyF3I	CTNAG	4 cut(s)	121, 176, 236, 249
Hsp92II	CATG	1 cut(s)	366
KspI	CCGCGG	1 cut(s)	171
Kzo9I	GATC	2 cut(s)	396, 472
LguI	GCTCTTC	1 cut(s)	142
LpnPI	CCDG	8 cut(s)	192, 230, 248, 386, 413, 413, 448, 450
Lsp1109I	GCAGC	4 cut(s)	93, 167, 195, 200
LweI	GCATC	2 cut(s)	288, 310
MaeIII	GTNAC	2 cut(s)	9, 349
MalI	GATC	2 cut(s)	398, 474
MboI	GATC	2 cut(s)	396, 472
MboII	GAAGA	4 cut(s)	156, 159, 232, 370
MflI	RGATCY	1 cut(s)	396
MluCI	AATT	3 cut(s)	193, 276, 314
MlyI	GAGTC	1 cut(s)	349
MnlI	CCTC	5 cut(s)	78, 182, 194, 231, 450
Mph1103I	ATGCAT	1 cut(s)	303
MseI	TTAA	1 cut(s)	58
MslI	CAYNNNNRTG	1 cut(s)	44
MspA1I	CMGCKG	2 cut(s)	170, 180
MspI	CCGG	1 cut(s)	435
MspR9I	CCNGG	1 cut(s)	401
MvaI	CCWGG	1 cut(s)	401
MvnI	CGCG	2 cut(s)	170, 258
MwoI	GCNNNNNNNGC	3 cut(s)	189, 307, 440
NdeII	GATC	2 cut(s)	396, 472
NlaIII	CATG	1 cut(s)	366
NlaIV	GGNNCC	1 cut(s)	447
NmuCI	GTSAC	2 cut(s)	9, 349
NsiI	ATGCAT	1 cut(s)	303
NspI	RCATGY	1 cut(s)	366
PciI	ACATGT	1 cut(s)	362
PciSI	GCTCTTC	1 cut(s)	142
PfeI	GAWTC	1 cut(s)	49
PflFI	GACNNNGTC	1 cut(s)	15
PkrI	GCNGC	5 cut(s)	108, 172, 182, 185, 215
PleI	GAGTC	1 cut(s)	348
PpsI	GAGTC	1 cut(s)	348
PscI	ACATGT	1 cut(s)	362
Psp6I	CCWGG	1 cut(s)	399
PspGI	CCWGG	1 cut(s)	399
PspN4I	GGNNCC	1 cut(s)	447
PstI	CTGCAG	1 cut(s)	185
PsuI	RGATCY	1 cut(s)	396
PsyI	GACNNNGTC	1 cut(s)	15
PvuII	CAGCTG	1 cut(s)	180
RsaI	GTAC	1 cut(s)	426
RsaNI	GTAC	1 cut(s)	425
RseI	CAYNNNNRTG	1 cut(s)	44
SacII	CCGCGG	1 cut(s)	171
SapI	GCTCTTC	1 cut(s)	142
SaqAI	TTAA	1 cut(s)	58
SatI	GCNGC	5 cut(s)	107, 171, 181, 184, 214
Sau3AI	GATC	2 cut(s)	396, 472
SchI	GAGTC	1 cut(s)	349
ScrFI	CCNGG	1 cut(s)	401
SetI	ASST	9 cut(s)	69, 108, 122, 131, 182, 215, 237, 432, 469
SfaNI	GCATC	2 cut(s)	288, 310
SfcI	CTRYAG	1 cut(s)	181
Sfr303I	CCGCGG	1 cut(s)	171
SgrBI	CCGCGG	1 cut(s)	171
SmiMI	CAYNNNNRTG	1 cut(s)	44
Sse9I	AATT	3 cut(s)	193, 276, 314
SsiI	CCGC	4 cut(s)	168, 170, 258, 443
StyD4I	CCNGG	1 cut(s)	399
StyI	CCWWGG	2 cut(s)	110, 452
TaaI	ACNGT	4 cut(s)	9, 17, 31, 383
TaqI	TCGA	1 cut(s)	93
TasI	AATT	3 cut(s)	193, 276, 314
TatI	WGTACW	1 cut(s)	424
TauI	GCSGC	1 cut(s)	173
TfiI	GAWTC	1 cut(s)	49
Tru1I	TTAA	1 cut(s)	58
Tru9I	TTAA	1 cut(s)	58
TscAI	CASTG	1 cut(s)	296
TseFI	GTSAC	2 cut(s)	9, 349
TseI	GCWGC	4 cut(s)	106, 180, 183, 213
Tsp45I	GTSAC	2 cut(s)	9, 349
TspDTI	ATGAA	2 cut(s)	28, 62
TspRI	CASTG	1 cut(s)	296
Tth111I	GACNNNGTC	1 cut(s)	15
XapI	RAATTY	1 cut(s)	314
XceI	RCATGY	1 cut(s)	366
XmiI	GTMKAC	1 cut(s)	33
Zsp2I	ATGCAT	1 cut(s)	303

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.