Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000171

Orthogroup ID

OG0010529

Physical Location & Seq

Genomic Coordinates Forward (+)

106345 .. 108944

Gene Structure 2600 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_171G00441490.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1221 bp

ATGACGTCAGCGATCGGATGGTACGGACCGCTAATCGACCTGTCGAAGGCGGCGCTTCACATCGGCGACTTCGTTCAGCTGGTCGTCTTCATCCACCGAATCACTCCTCTTCAGTATAAATTATCCAACGGCGGAGAAGTAATCCGGACCGACATCCAGGTCGGCGACGAAACGAAGCCCTTTTTCTCCGTATCCCTATGGCAAAAGCAAATGGGATCCATGGCCGTCTACGGCGACGTCGTTTTGTTACAAAATGTGAAGATAGTAAAATATCGTGATGTTGTTGAAGCTAAAACCGTGACACAGTCGTCTTTACACCGTCTACTTCATCCTTATGAATCCATTTTAACTAAAGGTGTGGATGAGTTGATAGAGGGGTGTCGAGTTGGGATAGCTGCCAAGGAGAAGCTAAGAAAGGTAGTAGAATGGGTGAAGAAGAGCAACATTCGTCAGTTCCGCGGCTCTCAGCTGCAGCAGAGGCAATTCCCGAGGAACTGGAAGCTGCCAGAAGAGACTAAAAAACCTGAGGATTGTTGTTCAGTTTCGCGGTTATCACATCTAACTAATTCTTGCAAGGCAGTGTTTGATGCATCTGTTGCCGAAATTTTTATGCCACAAGCTGAATGTGAGTTGCCAGATATGCGGTTCCCCTTGGAGGCCAACAGTGAAAACACGTCTAAGCAAAATGCAGCTGCCCTTTACTGTTTGGAAAGCTCGAACCGCCTTCATGTTATAAGCCTCATATACAGGCCTTTCATGTTATATGTATGGGATGATTCGGATTATGCACCACTCCTGGTCAAAAACAAAGCCGCAGAGCTTTTGTTTGGGAACATCAAAGCTGAAAGAGTCTATTCGTGCTATAAGGAAAAACCACATGACGGAGAAGTTAATTTCAAAGACACTGACACAGAAACTGGTGCAAGTGCAAAACCGACTTCACAACCTAAAGCCGCTGAGGGAGGAGTTCTGGTTTCTTGCTCATCAGCTGTAGACAAAAGGAGCTTAGAATGGGAGGGAAAACTTGGTTTCCAGAGGAACCTGGACTTCTATAGGATTTGGTTAATTCTTCTGAAAACTATGCTGCAGCAAAGAACGAACAGCCTTTTGAAATTTGTAGTCAATGTAAATGCCAGTTTGGATTGGGAGAATGGGAGGTTTGAAATGGTTTCTGTGCAGATGCCATGCTTAAGAACTAAGCGATCTCCAGACCATATTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

406

Amino Acids

46.13

Weight (kDa)

8.7

Isoelectric Point (pI)

38.45

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010529)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g26511 FvH4_2g26511
malus_domestica	MD08G1168100.v1.1
prunus_persica	Prupe.1G501800_v2.0.a1 Prupe.1G501800_v2.0.a1 Prupe.1G501800_v2.0.a1 Prupe.1G501800_v2.0.a1 Prupe.1G501800_v2.0.a1
pyrus_communis	pycom08g14340
rosa_chinensis	RchiOBHm_Chr6g0295331
rosa_laevigata	RLG00000011812
rosa_multiflora	Rmu_co8129814.1_g000001 Rmu_sc0003058.1_g000016
rosa_roxburghii	Rroxscaffold_171G00441490 Rroxscaffold_7G00172570
rosa_rugosa	Rorug06G0250000
rosa_samantha	Rh6AG363300 Rh6BG371400 Rh6CG377900 Rh6DG364000
rosa_wichuraiana	Rw6G031700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	734
AasI	GACNNNNNNGTC	2 cut(s)	158, 307
AatII	GACGTC	2 cut(s)	8, 240
AccI	GTMKAC	3 cut(s)	228, 322, 993
AccII	CGCG	2 cut(s)	459, 547
AccIII	TCCGGA	1 cut(s)	144
AclWI	GGATC	2 cut(s)	210, 223
AcoI	YGGCCR	1 cut(s)	222
AcsI	RAATTY	2 cut(s)	603, 1112
AcuI	CTGAAG	1 cut(s)	95
AcyI	GRCGYC	2 cut(s)	5, 237
AfaI	GTAC	1 cut(s)	23
AfiI	CCNNNNNNNGG	3 cut(s)	46, 655, 881
AflII	CTTAAG	1 cut(s)	1189
AflIII	ACRYGT	1 cut(s)	672
AgsI	TTSAA	4 cut(s)	287, 898, 1111, 1163
AjiI	CACGTC	1 cut(s)	675
AjnI	CCWGG	3 cut(s)	156, 795, 1041
Alw26I	GTCTC	1 cut(s)	506
AlwI	GGATC	2 cut(s)	210, 223
AlwNI	CAGNNNCTG	1 cut(s)	917
Ama87I	CYCGRG	1 cut(s)	487
Aor13HI	TCCGGA	1 cut(s)	144
AoxI	GGCC	3 cut(s)	222, 657, 749
ApeKI	GCWGC	8 cut(s)	395, 469, 472, 502, 689, 692, 1084, 1087
ApoI	RAATTY	2 cut(s)	603, 1112
AspLEI	GCGC	1 cut(s)	55
AspS9I	GGNCC	2 cut(s)	26, 147
AsuHPI	GGTGA	1 cut(s)	442
AvaI	CYCGRG	1 cut(s)	487
AvaII	GGWCC	2 cut(s)	26, 147
AxyI	CCTNAGG	1 cut(s)	525
BamHI	GGATCC	1 cut(s)	215
BbsI	GAAGAC	1 cut(s)	79
BbvCI	CCTCAGC	1 cut(s)	957
BbvI	GCAGC	8 cut(s)	382, 456, 484, 489, 679, 701, 1071, 1099
BccI	CCATC	1 cut(s)	12
BceAI	ACGGC	3 cut(s)	145, 209, 247
BciT130I	CCWGG	3 cut(s)	158, 797, 1043
BciVI	GTATCC	1 cut(s)	202
BcoDI	GTCTC	1 cut(s)	506
BfmI	CTRYAG	4 cut(s)	470, 990, 1051, 1085
BfoI	RGCGCY	1 cut(s)	56
BfrI	CTTAAG	1 cut(s)	1189
BfuI	GTATCC	1 cut(s)	202
Bme1390I	CCNGG	3 cut(s)	158, 797, 1043
Bme18I	GGWCC	2 cut(s)	26, 147
BmeT110I	CYCGRG	1 cut(s)	487
BmgBI	CACGTC	1 cut(s)	675
BmgT120I	GGNCC	2 cut(s)	26, 147
BmiI	GGNNCC	3 cut(s)	217, 647, 1040
BmrFI	CCNGG	3 cut(s)	158, 797, 1043
BmsI	GCATC	3 cut(s)	577, 599, 1170
BpiI	GAAGAC	1 cut(s)	79
BpmI	CTGGAG	1 cut(s)	1191
Bpu10I	CCTNAGC	1 cut(s)	957
BsaHI	GRCGYC	2 cut(s)	5, 237
BsaJI	CCNNGG	5 cut(s)	219, 399, 457, 488, 651
BsaWI	WCCGGW	1 cut(s)	144
BsaXI	ACNNNNNCTCC	2 cut(s)	957, 987
Bsc4I	CCNNNNNNNGG	3 cut(s)	46, 655, 881
Bse1I	ACTGG	3 cut(s)	500, 922, 1134
Bse21I	CCTNAGG	1 cut(s)	525
BseAI	TCCGGA	1 cut(s)	144
BseBI	CCWGG	3 cut(s)	158, 797, 1043
BseDI	CCNNGG	5 cut(s)	219, 399, 457, 488, 651
BseGI	GGATG	6 cut(s)	23, 90, 153, 328, 367, 778
BseLI	CCNNNNNNNGG	3 cut(s)	46, 655, 881
BseMII	CTCAG	3 cut(s)	479, 516, 948
BseNI	ACTGG	3 cut(s)	500, 922, 1134
BseRI	GAGGAG	2 cut(s)	96, 978
BseXI	GCAGC	8 cut(s)	382, 456, 484, 489, 679, 701, 1071, 1099
BsgI	GTGCAG	1 cut(s)	1196
Bsh1236I	CGCG	2 cut(s)	459, 547
Bsh1285I	CGRYCG	1 cut(s)	15
BshFI	GGCC	3 cut(s)	224, 659, 751
BsiEI	CGRYCG	1 cut(s)	15
BsiHKCI	CYCGRG	1 cut(s)	487
BsiSI	CCGG	1 cut(s)	145
BslI	CCNNNNNNNGG	3 cut(s)	46, 655, 881
BsmAI	GTCTC	1 cut(s)	506
BsnI	GGCC	3 cut(s)	224, 659, 751
BsoBI	CYCGRG	1 cut(s)	487
Bsp13I	TCCGGA	1 cut(s)	144
Bsp143I	GATC	3 cut(s)	12, 215, 1202
Bsp19I	CCATGG	1 cut(s)	219
BspANI	GGCC	3 cut(s)	224, 659, 751
BspCNI	CTCAG	3 cut(s)	478, 517, 949
BspEI	TCCGGA	1 cut(s)	144
BspFNI	CGCG	2 cut(s)	459, 547
BspLI	GGNNCC	3 cut(s)	217, 647, 1040
BspMAI	CTGCAG	2 cut(s)	474, 1089
BspPI	GGATC	2 cut(s)	210, 223
BspQI	GCTCTTC	1 cut(s)	431
BspTI	CTTAAG	1 cut(s)	1189
BsrI	ACTGG	3 cut(s)	500, 922, 1134
BssECI	CCNNGG	5 cut(s)	219, 399, 457, 488, 651
BssMI	GATC	3 cut(s)	12, 215, 1202
BssNI	GRCGYC	2 cut(s)	5, 237
BssT1I	CCWWGG	3 cut(s)	219, 399, 651
Bst2UI	CCWGG	3 cut(s)	158, 797, 1043
Bst4CI	ACNGT	5 cut(s)	298, 306, 320, 665, 704
Bst6I	CTCTTC	3 cut(s)	114, 431, 504
BstACI	GRCGYC	2 cut(s)	5, 237
BstAFI	CTTAAG	1 cut(s)	1189
BstAPI	GCANNNNNTGC	1 cut(s)	596
BstDEI	CTNAG	7 cut(s)	410, 465, 525, 678, 957, 1006, 1197
BstDSI	CCRYGG	2 cut(s)	219, 457
BstENI	CCTNNNNNAGG	1 cut(s)	44
BstF5I	GGATG	6 cut(s)	23, 90, 153, 328, 367, 778
BstFNI	CGCG	2 cut(s)	459, 547
BstH2I	RGCGCY	1 cut(s)	56
BstHHI	GCGC	1 cut(s)	55
BstKTI	GATC	3 cut(s)	15, 218, 1205
BstMAI	GTCTC	1 cut(s)	506
BstMBI	GATC	3 cut(s)	12, 215, 1202
BstMCI	CGRYCG	1 cut(s)	15
BstMWI	GCNNNNNNNGC	4 cut(s)	478, 596, 640, 720
BstNI	CCWGG	3 cut(s)	158, 797, 1043
BstSCI	CCNGG	3 cut(s)	156, 795, 1041
BstSFI	CTRYAG	4 cut(s)	470, 990, 1051, 1085
BstUI	CGCG	2 cut(s)	459, 547
BstV1I	GCAGC	8 cut(s)	382, 456, 484, 489, 679, 701, 1071, 1099
BstV2I	GAAGAC	1 cut(s)	79
BstX2I	RGATCY	1 cut(s)	215
BstYI	RGATCY	1 cut(s)	215
Bsu36I	CCTNAGG	1 cut(s)	525
BsuI	GTATCC	1 cut(s)	202
BsuRI	GGCC	3 cut(s)	224, 659, 751
BtgI	CCRYGG	2 cut(s)	219, 457
BtrI	CACGTC	1 cut(s)	675
BtsCI	GGATG	6 cut(s)	23, 90, 153, 328, 367, 778
BtsI	GCAGTG	1 cut(s)	585
BtsIMutI	CAGTG	3 cut(s)	585, 670, 903
CaiI	CAGNNNCTG	1 cut(s)	917
CfoI	GCGC	1 cut(s)	55
Cfr13I	GGNCC	2 cut(s)	26, 147
Cfr42I	CCGCGG	1 cut(s)	460
CpoI	CGGWCCG	2 cut(s)	26, 147
Csp6I	GTAC	1 cut(s)	22
CspI	CGGWCCG	2 cut(s)	26, 147
CviAII	CATG	5 cut(s)	220, 728, 757, 878, 1185
CviQI	GTAC	1 cut(s)	22
DdeI	CTNAG	7 cut(s)	410, 465, 525, 678, 957, 1006, 1197
DpnI	GATC	3 cut(s)	14, 217, 1204
DpnII	GATC	3 cut(s)	12, 215, 1202
DrdI	GACNNNNNNGTC	2 cut(s)	158, 307
DseDI	GACNNNNNNGTC	2 cut(s)	158, 307
EaeI	YGGCCR	1 cut(s)	222
Eam1104I	CTCTTC	3 cut(s)	114, 431, 504
EarI	CTCTTC	3 cut(s)	114, 431, 504
EciI	GGCGGA	1 cut(s)	147
Eco130I	CCWWGG	3 cut(s)	219, 399, 651
Eco147I	AGGCCT	1 cut(s)	751
Eco47I	GGWCC	2 cut(s)	26, 147
Eco57I	CTGAAG	1 cut(s)	95
Eco81I	CCTNAGG	1 cut(s)	525
Eco88I	CYCGRG	1 cut(s)	487
EcoNI	CCTNNNNNAGG	1 cut(s)	44
EcoRII	CCWGG	3 cut(s)	156, 795, 1041
EcoT14I	CCWWGG	3 cut(s)	219, 399, 651
EcoT22I	ATGCAT	1 cut(s)	592
ErhI	CCWWGG	3 cut(s)	219, 399, 651
FaeI	CATG	5 cut(s)	223, 731, 760, 881, 1188
FatI	CATG	5 cut(s)	219, 727, 756, 877, 1184
FblI	GTMKAC	3 cut(s)	228, 322, 993
FokI	GGATG	6 cut(s)	30, 77, 140, 315, 374, 785
GlaI	GCGC	1 cut(s)	54
GsuI	CTGGAG	1 cut(s)	1191
HaeII	RGCGCY	1 cut(s)	56
HaeIII	GGCC	3 cut(s)	224, 659, 751
HapII	CCGG	1 cut(s)	145
HhaI	GCGC	1 cut(s)	55
Hin1I	GRCGYC	2 cut(s)	5, 237
Hin1II	CATG	5 cut(s)	223, 731, 760, 881, 1188
Hin6I	GCGC	1 cut(s)	53
HinP1I	GCGC	1 cut(s)	53
HinfI	GANTC	4 cut(s)	99, 338, 776, 849
HpaII	CCGG	1 cut(s)	145
HphI	GGTGA	1 cut(s)	442
Hpy166II	GTNNAC	3 cut(s)	229, 323, 994
Hpy188I	TCNGA	3 cut(s)	17, 781, 1074
Hpy188III	TCNNGA	5 cut(s)	145, 275, 487, 1033, 1208
Hpy8I	GTNNAC	3 cut(s)	229, 323, 994
Hpy99I	CGWCG	3 cut(s)	170, 239, 242
HpyAV	CCTTC	2 cut(s)	40, 734
HpyCH4III	ACNGT	5 cut(s)	298, 306, 320, 665, 704
HpyCH4IV	ACGT	3 cut(s)	5, 237, 674
HpyCH4V	TGCA	9 cut(s)	472, 573, 590, 689, 788, 923, 929, 1087, 1177
HpyF10VI	GCNNNNNNNGC	4 cut(s)	478, 596, 640, 720
HpyF3I	CTNAG	7 cut(s)	410, 465, 525, 678, 957, 1006, 1197
HpySE526I	ACGT	3 cut(s)	5, 237, 674
Hsp92I	GRCGYC	2 cut(s)	5, 237
Hsp92II	CATG	5 cut(s)	223, 731, 760, 881, 1188
HspAI	GCGC	1 cut(s)	53
Kpn2I	TCCGGA	1 cut(s)	144
KspI	CCGCGG	1 cut(s)	460
Kzo9I	GATC	3 cut(s)	12, 215, 1202
LguI	GCTCTTC	1 cut(s)	431
LmnI	GCTCC	1 cut(s)	1002
Lsp1109I	GCAGC	8 cut(s)	382, 456, 484, 489, 679, 701, 1071, 1099
LweI	GCATC	3 cut(s)	577, 599, 1170
MaeII	ACGT	3 cut(s)	5, 237, 674
MaeIII	GTNAC	2 cut(s)	246, 298
MalI	GATC	3 cut(s)	14, 217, 1204
MboI	GATC	3 cut(s)	12, 215, 1202
MboII	GAAGA	7 cut(s)	79, 101, 271, 445, 448, 521, 1061
MflI	RGATCY	1 cut(s)	215
MluCI	AATT	7 cut(s)	119, 482, 565, 603, 892, 1065, 1112
MlyI	GAGTC	1 cut(s)	858
MmeI	TCCRAC	1 cut(s)	150
Mph1103I	ATGCAT	1 cut(s)	592
MroI	TCCGGA	1 cut(s)	144
MseI	TTAA	5 cut(s)	347, 891, 1064, 1190, 1219
MslI	CAYNNNNRTG	1 cut(s)	333
MspA1I	CMGCKG	6 cut(s)	79, 459, 469, 692, 956, 989
MspCI	CTTAAG	1 cut(s)	1189
MspI	CCGG	1 cut(s)	145
MspR9I	CCNGG	3 cut(s)	158, 797, 1043
MvaI	CCWGG	3 cut(s)	158, 797, 1043
MvnI	CGCG	2 cut(s)	459, 547
MwoI	GCNNNNNNNGC	4 cut(s)	478, 596, 640, 720
NcoI	CCATGG	1 cut(s)	219
NdeII	GATC	3 cut(s)	12, 215, 1202
NlaIII	CATG	5 cut(s)	223, 731, 760, 881, 1188
NlaIV	GGNNCC	3 cut(s)	217, 647, 1040
NmuCI	GTSAC	1 cut(s)	298
NsiI	ATGCAT	1 cut(s)	592
PceI	AGGCCT	1 cut(s)	751
PciSI	GCTCTTC	1 cut(s)	431
PcsI	WCGNNNNNNNCGW	2 cut(s)	69, 237
PfeI	GAWTC	3 cut(s)	99, 338, 776
PflFI	GACNNNGTC	1 cut(s)	304
Ple19I	CGATCG	1 cut(s)	15
PleI	GAGTC	1 cut(s)	857
PpsI	GAGTC	1 cut(s)	857
PsiI	TTATAA	1 cut(s)	734
Psp6I	CCWGG	3 cut(s)	156, 795, 1041
PspGI	CCWGG	3 cut(s)	156, 795, 1041
PspN4I	GGNNCC	3 cut(s)	217, 647, 1040
PspPI	GGNCC	2 cut(s)	26, 147
PstI	CTGCAG	2 cut(s)	474, 1089
PstNI	CAGNNNCTG	1 cut(s)	917
PsuI	RGATCY	1 cut(s)	215
PsyI	GACNNNGTC	1 cut(s)	304
PvuI	CGATCG	1 cut(s)	15
PvuII	CAGCTG	4 cut(s)	79, 469, 692, 989
RsaI	GTAC	1 cut(s)	23
RsaNI	GTAC	1 cut(s)	22
RseI	CAYNNNNRTG	1 cut(s)	333
Rsr2I	CGGWCCG	2 cut(s)	26, 147
RsrII	CGGWCCG	2 cut(s)	26, 147
SacII	CCGCGG	1 cut(s)	460
SapI	GCTCTTC	1 cut(s)	431
SaqAI	TTAA	5 cut(s)	347, 891, 1064, 1190, 1219
Sau3AI	GATC	3 cut(s)	12, 215, 1202
Sau96I	GGNCC	2 cut(s)	26, 147
SchI	GAGTC	1 cut(s)	858
ScrFI	CCNGG	3 cut(s)	158, 797, 1043
SfaNI	GCATC	3 cut(s)	577, 599, 1170
SfcI	CTRYAG	4 cut(s)	470, 990, 1051, 1085
Sfr303I	CCGCGG	1 cut(s)	460
SgrBI	CCGCGG	1 cut(s)	460
SinI	GGWCC	2 cut(s)	26, 147
SmiMI	CAYNNNNRTG	1 cut(s)	333
SmlI	CTYRAG	1 cut(s)	1189
SmoI	CTYRAG	1 cut(s)	1189
Sse9I	AATT	7 cut(s)	119, 482, 565, 603, 892, 1065, 1112
SseBI	AGGCCT	1 cut(s)	751
StuI	AGGCCT	1 cut(s)	751
StyD4I	CCNGG	3 cut(s)	156, 795, 1041
StyI	CCWWGG	3 cut(s)	219, 399, 651
TaaI	ACNGT	5 cut(s)	298, 306, 320, 665, 704
TaiI	ACGT	3 cut(s)	8, 240, 677
TaqI	TCGA	4 cut(s)	36, 44, 382, 716
TaqII	GACCGA	1 cut(s)	164
TasI	AATT	7 cut(s)	119, 482, 565, 603, 892, 1065, 1112
TauI	GCSGC	4 cut(s)	53, 462, 815, 956
TfiI	GAWTC	3 cut(s)	99, 338, 776
Tru1I	TTAA	5 cut(s)	347, 891, 1064, 1190, 1219
Tru9I	TTAA	5 cut(s)	347, 891, 1064, 1190, 1219
TscAI	CASTG	3 cut(s)	585, 670, 910
TseFI	GTSAC	1 cut(s)	298
TseI	GCWGC	8 cut(s)	395, 469, 472, 502, 689, 692, 1084, 1087
Tsp45I	GTSAC	1 cut(s)	298
TspDTI	ATGAA	5 cut(s)	79, 317, 351, 716, 745
TspGWI	ACGGA	3 cut(s)	39, 178, 897
TspRI	CASTG	3 cut(s)	585, 670, 910
Tth111I	GACNNNGTC	1 cut(s)	304
Vha464I	CTTAAG	1 cut(s)	1189
VpaK11BI	GGWCC	2 cut(s)	26, 147
XagI	CCTNNNNNAGG	1 cut(s)	44
XapI	RAATTY	2 cut(s)	603, 1112
XmiI	GTMKAC	3 cut(s)	228, 322, 993
ZraI	GACGTC	2 cut(s)	6, 238
Zsp2I	ATGCAT	1 cut(s)	592

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.