Prupe.2G081400_v2.0.a1

proteasome assembly

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp02
OG0019794
Physical Location & Seq
Reverse (-)
12624011 .. 12625379
1369 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.2G081400.1

Sequence Viewer

Length: 225 bp
ATGGAGATTCAAATGGCTGTTCAAAAACAACGACATTTCCCTGAGAAGCGAACTTTCCTTCGACAGCGAGTGGAGGCCAGGCTTGCATCTCTTTTGATGGAAAGCAAGGAGTATTCAGAAGCACTAAGTGTCCTATCAGGCTTGATCAAGGAAGTGAGAAGGCTAGTTGACAAGCTTCTTCTTGTGGACATATATTTGATACGAGTAAGCTCAATTTCTCTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000502 GO:0001775 GO:0002252 GO:0002263 GO:0002274 GO:0002275 GO:0002283 GO:0002366 GO:0002376 GO:0002443 GO:0002444 GO:0002446 GO:0003674 GO:0005198 GO:0005488 GO:0005515 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005829 GO:0005838 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0006810 GO:0006887 GO:0006950 GO:0006955 GO:0006970 GO:0006972 GO:0007088 GO:0007275 GO:0007346 GO:0007568 GO:0008150 GO:0008152 GO:0008340 GO:0008541 GO:0009056 GO:0009057 GO:0009628 GO:0009896 GO:0009987 GO:0010259 GO:0010498 GO:0010564 GO:0010638 GO:0010965 GO:0012505 GO:0016043 GO:0016192 GO:0016579 GO:0019538 GO:0019941 GO:0022607 GO:0022624 GO:0030071 GO:0030141 GO:0030154 GO:0030163 GO:0031331 GO:0031410 GO:0031597 GO:0031974 GO:0031981 GO:0031982 GO:0031983 GO:0032270 GO:0032436 GO:0032501 GO:0032502 GO:0032940 GO:0032991 GO:0033043 GO:0033044 GO:0033045 GO:0033047 GO:0034515 GO:0034622 GO:0034774 GO:0036211 GO:0036230 GO:0042119 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043248 GO:0043299 GO:0043312 GO:0043412 GO:0043632 GO:0043687 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044433 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0045055 GO:0045321 GO:0045732 GO:0045787 GO:0045840 GO:0045842 GO:0045862 GO:0045931 GO:0046903 GO:0048518 GO:0048522 GO:0048856 GO:0048863 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051128 GO:0051130 GO:0051179 GO:0051234 GO:0051247 GO:0051603 GO:0051726 GO:0051781 GO:0051783 GO:0051785 GO:0051983 GO:0051984 GO:0060205 GO:0062033 GO:0065003 GO:0065007 GO:0070013 GO:0070646 GO:0070647 GO:0071704 GO:0071840 GO:0090068 GO:0097708 GO:0099503 GO:0101002 GO:1901564 GO:1901565 GO:1901575 GO:1901800 GO:1901970 GO:1901987 GO:1901989 GO:1901990 GO:1901992 GO:1902099 GO:1902101 GO:1902494 GO:1903052 GO:1903364 GO:1904813 GO:1905368 GO:1905369 GO:1905818 GO:1905820 GO:2001252
KEGG Pathways
Metabolic & Signaling
ko03050 ko05169 map03050 map05169
Pfam Domains
Protein Families
PCI

Protein Analysis

75

Amino Acids

8.67

Weight (kDa)

9.86

Isoelectric Point (pI)

42.81

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AdeI CACNNNGTG 1 cut(s) 128
AgsI TTSAA 2 cut(s) 11, 23
AjnI CCWGG 1 cut(s) 77
AluBI AGCT 2 cut(s) 175, 210
AluI AGCT 2 cut(s) 175, 210
AoxI GGCC 1 cut(s) 75
BccI CCATC 1 cut(s) 91
BciT130I CCWGG 1 cut(s) 79
BclI TGATCA 1 cut(s) 144
BfaI CTAG 1 cut(s) 164
Bme1390I CCNGG 1 cut(s) 79
BmrFI CCNGG 1 cut(s) 79
BmsI GCATC 1 cut(s) 95
BseBI CCWGG 1 cut(s) 79
BseMII CTCAG 1 cut(s) 33
BshFI GGCC 1 cut(s) 77
BsnI GGCC 1 cut(s) 77
Bsp143I GATC 1 cut(s) 144
BspANI GGCC 1 cut(s) 77
BspCNI CTCAG 1 cut(s) 34
BssMI GATC 1 cut(s) 144
Bst2UI CCWGG 1 cut(s) 79
BstC8I GCNNGC 1 cut(s) 84
BstDEI CTNAG 2 cut(s) 42, 125
BstKTI GATC 1 cut(s) 147
BstMBI GATC 1 cut(s) 144
BstMWI GCNNNNNNNGC 1 cut(s) 83
BstNI CCWGG 1 cut(s) 79
BstSCI CCNGG 1 cut(s) 77
BsuRI GGCC 1 cut(s) 77
Cac8I GCNNGC 1 cut(s) 84
CviJI RGCY 7 cut(s) 17, 77, 82, 141, 163, 175, 210
CviKI_1 RGCY 7 cut(s) 17, 77, 82, 141, 163, 175, 210
DdeI CTNAG 2 cut(s) 42, 125
DpnI GATC 1 cut(s) 146
DpnII GATC 1 cut(s) 144
DraIII CACNNNGTG 1 cut(s) 128
EcoRII CCWGG 1 cut(s) 77
FaiI YATR 2 cut(s) 191, 193
FbaI TGATCA 1 cut(s) 144
FspBI CTAG 1 cut(s) 164
HaeIII GGCC 1 cut(s) 77
HincII GTYRAC 1 cut(s) 169
HindII GTYRAC 1 cut(s) 169
HindIII AAGCTT 1 cut(s) 173
HinfI GANTC 1 cut(s) 7
Hpy166II GTNNAC 2 cut(s) 169, 187
Hpy188I TCNGA 1 cut(s) 118
Hpy8I GTNNAC 2 cut(s) 169, 187
HpyAV CCTTC 2 cut(s) 68, 153
HpyCH4V TGCA 1 cut(s) 86
HpyF10VI GCNNNNNNNGC 1 cut(s) 83
HpyF3I CTNAG 2 cut(s) 42, 125
Ksp22I TGATCA 1 cut(s) 144
Kzo9I GATC 1 cut(s) 144
LpnPI CCDG 4 cut(s) 54, 64, 91, 123
LweI GCATC 1 cut(s) 95
MaeI CTAG 1 cut(s) 164
MalI GATC 1 cut(s) 146
MboI GATC 1 cut(s) 144
MboII GAAGA 1 cut(s) 170
MluCI AATT 1 cut(s) 213
MnlI CCTC 1 cut(s) 67
MspR9I CCNGG 1 cut(s) 79
MvaI CCWGG 1 cut(s) 79
MwoI GCNNNNNNNGC 1 cut(s) 83
NdeII GATC 1 cut(s) 144
PfeI GAWTC 1 cut(s) 7
Psp6I CCWGG 1 cut(s) 77
PspGI CCWGG 1 cut(s) 77
Sau3AI GATC 1 cut(s) 144
ScrFI CCNGG 1 cut(s) 79
SetI ASST 2 cut(s) 177, 212
SfaNI GCATC 1 cut(s) 95
Sse9I AATT 1 cut(s) 213
SspMI CTAG 1 cut(s) 164
StyD4I CCNGG 1 cut(s) 77
TaqI TCGA 1 cut(s) 61
TasI AATT 1 cut(s) 213
TfiI GAWTC 1 cut(s) 7
XspI CTAG 1 cut(s) 164
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.