Prupe.8G055900_v2.0.a1

proteasome assembly

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp08
OG0019794
Physical Location & Seq
Reverse (-)
6495724 .. 6496102
379 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.8G055900.1

Sequence Viewer

Length: 264 bp
ATGTCTTCATCATATCTCCCAGAAACTACTGATTCAATTGCTCATGCTTTAGAGAAAATCAAGCAGAGGATAGATTTCCCTGAGAAGCGAACTTTCCTTCGACAGCGAGTGGAGGCCAGGCTTGCATCTCTTTTGATGGAAAGCAAGGAGTATTCAGAAGCACTAAGTGTCCTATCAGGCTTGATCAAGGAAGTGAGAAGGCTAGTTGACAAGCTTCTTCTTGTGGACATATATTTGATGCGAGTAAGCTCAATTTCTCTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000502 GO:0001775 GO:0002252 GO:0002263 GO:0002274 GO:0002275 GO:0002283 GO:0002366 GO:0002376 GO:0002443 GO:0002444 GO:0002446 GO:0003674 GO:0005198 GO:0005488 GO:0005515 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005829 GO:0005838 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0006810 GO:0006887 GO:0006950 GO:0006955 GO:0006970 GO:0006972 GO:0007088 GO:0007275 GO:0007346 GO:0007568 GO:0008150 GO:0008152 GO:0008340 GO:0008541 GO:0009056 GO:0009057 GO:0009628 GO:0009896 GO:0009987 GO:0010259 GO:0010498 GO:0010564 GO:0010638 GO:0010965 GO:0012505 GO:0016043 GO:0016192 GO:0016579 GO:0019538 GO:0019941 GO:0022607 GO:0022624 GO:0030071 GO:0030141 GO:0030154 GO:0030163 GO:0031331 GO:0031410 GO:0031597 GO:0031974 GO:0031981 GO:0031982 GO:0031983 GO:0032270 GO:0032436 GO:0032501 GO:0032502 GO:0032940 GO:0032991 GO:0033043 GO:0033044 GO:0033045 GO:0033047 GO:0034515 GO:0034622 GO:0034774 GO:0036211 GO:0036230 GO:0042119 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043248 GO:0043299 GO:0043312 GO:0043412 GO:0043632 GO:0043687 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044433 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0045055 GO:0045321 GO:0045732 GO:0045787 GO:0045840 GO:0045842 GO:0045862 GO:0045931 GO:0046903 GO:0048518 GO:0048522 GO:0048856 GO:0048863 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051128 GO:0051130 GO:0051179 GO:0051234 GO:0051247 GO:0051603 GO:0051726 GO:0051781 GO:0051783 GO:0051785 GO:0051983 GO:0051984 GO:0060205 GO:0062033 GO:0065003 GO:0065007 GO:0070013 GO:0070646 GO:0070647 GO:0071704 GO:0071840 GO:0090068 GO:0097708 GO:0099503 GO:0101002 GO:1901564 GO:1901565 GO:1901575 GO:1901800 GO:1901970 GO:1901987 GO:1901989 GO:1901990 GO:1901992 GO:1902099 GO:1902101 GO:1902494 GO:1903052 GO:1903364 GO:1904813 GO:1905368 GO:1905369 GO:1905818 GO:1905820 GO:2001252
KEGG Pathways
Metabolic & Signaling
ko03050 ko05169 map03050 map05169
Pfam Domains
Protein Families
PCI

Protein Analysis

88

Amino Acids

10.03

Weight (kDa)

9.1

Isoelectric Point (pI)

44.49

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AdeI CACNNNGTG 1 cut(s) 167
AgsI TTSAA 1 cut(s) 36
AjnI CCWGG 1 cut(s) 116
AluBI AGCT 2 cut(s) 214, 249
AluI AGCT 2 cut(s) 214, 249
AoxI GGCC 1 cut(s) 114
BccI CCATC 1 cut(s) 130
BciT130I CCWGG 1 cut(s) 118
BclI TGATCA 1 cut(s) 183
BfaI CTAG 1 cut(s) 203
Bme1390I CCNGG 1 cut(s) 118
BmrFI CCNGG 1 cut(s) 118
BmsI GCATC 2 cut(s) 134, 228
BseBI CCWGG 1 cut(s) 118
BseMII CTCAG 1 cut(s) 72
BshFI GGCC 1 cut(s) 116
BsnI GGCC 1 cut(s) 116
Bsp143I GATC 1 cut(s) 183
BspANI GGCC 1 cut(s) 116
BspCNI CTCAG 1 cut(s) 73
BssMI GATC 1 cut(s) 183
Bst2UI CCWGG 1 cut(s) 118
BstC8I GCNNGC 1 cut(s) 123
BstDEI CTNAG 2 cut(s) 81, 164
BstKTI GATC 1 cut(s) 186
BstMBI GATC 1 cut(s) 183
BstMWI GCNNNNNNNGC 1 cut(s) 122
BstNI CCWGG 1 cut(s) 118
BstSCI CCNGG 1 cut(s) 116
BsuRI GGCC 1 cut(s) 116
Cac8I GCNNGC 1 cut(s) 123
CviAII CATG 1 cut(s) 44
CviJI RGCY 6 cut(s) 116, 121, 180, 202, 214, 249
CviKI_1 RGCY 6 cut(s) 116, 121, 180, 202, 214, 249
DdeI CTNAG 2 cut(s) 81, 164
DpnI GATC 1 cut(s) 185
DpnII GATC 1 cut(s) 183
DraIII CACNNNGTG 1 cut(s) 167
EcoRII CCWGG 1 cut(s) 116
FaeI CATG 1 cut(s) 47
FaiI YATR 4 cut(s) 13, 45, 230, 232
FatI CATG 1 cut(s) 43
FbaI TGATCA 1 cut(s) 183
FspBI CTAG 1 cut(s) 203
HaeIII GGCC 1 cut(s) 116
Hin1II CATG 1 cut(s) 47
HincII GTYRAC 1 cut(s) 208
HindII GTYRAC 1 cut(s) 208
HindIII AAGCTT 1 cut(s) 212
HinfI GANTC 1 cut(s) 32
Hpy166II GTNNAC 2 cut(s) 208, 226
Hpy188I TCNGA 1 cut(s) 157
Hpy8I GTNNAC 2 cut(s) 208, 226
HpyAV CCTTC 2 cut(s) 107, 192
HpyCH4V TGCA 1 cut(s) 125
HpyF10VI GCNNNNNNNGC 1 cut(s) 122
HpyF3I CTNAG 2 cut(s) 81, 164
Hsp92II CATG 1 cut(s) 47
Ksp22I TGATCA 1 cut(s) 183
Kzo9I GATC 1 cut(s) 183
LpnPI CCDG 5 cut(s) 33, 93, 103, 130, 162
LweI GCATC 2 cut(s) 134, 228
MaeI CTAG 1 cut(s) 203
MalI GATC 1 cut(s) 185
MboI GATC 1 cut(s) 183
MboII GAAGA 1 cut(s) 209
MfeI CAATTG 1 cut(s) 36
MluCI AATT 2 cut(s) 36, 252
MnlI CCTC 2 cut(s) 60, 106
MspR9I CCNGG 1 cut(s) 118
MunI CAATTG 1 cut(s) 36
MvaI CCWGG 1 cut(s) 118
MwoI GCNNNNNNNGC 1 cut(s) 122
NdeII GATC 1 cut(s) 183
NlaIII CATG 1 cut(s) 47
PfeI GAWTC 1 cut(s) 32
Psp6I CCWGG 1 cut(s) 116
PspGI CCWGG 1 cut(s) 116
Sau3AI GATC 1 cut(s) 183
ScrFI CCNGG 1 cut(s) 118
SetI ASST 2 cut(s) 216, 251
SfaNI GCATC 2 cut(s) 134, 228
Sse9I AATT 2 cut(s) 36, 252
SspMI CTAG 1 cut(s) 203
StyD4I CCNGG 1 cut(s) 116
TaqI TCGA 1 cut(s) 100
TasI AATT 2 cut(s) 36, 252
TfiI GAWTC 1 cut(s) 32
XspI CTAG 1 cut(s) 203
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.