Prupe.3G128000_v2.0.a1

proteasome assembly

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp03
OG0019794
Physical Location & Seq
Reverse (-)
12715004 .. 12717448
2445 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.3G128000.1

Sequence Viewer

Length: 468 bp
ATGTCTTTGAGATACACAAAGGCACAAACACATCAAACATCCAAAAATTTGCGTCTAAAATTTGACGACAGCAGCCTCATATTTGAAGTCAGACAAACAATTTTTTGGAAGTTGATGATAAGGAATCAACGTCGGTTCGTAAAACACGGAAGACGTATTAAACATACAAACAACGTCGGTCATAAATCTACAGGAAATGAGCGAGTGGAGGCCAGGCTTGCATCTCTTTTGATGGAAAGCAAGGAGTATTCAGAAGCACTAAGTGTCCTATCAGGCTTGATCAAGGAAGTGAGAAGGCTAGTTGACAAGCTTCTTCTTGTGGACATATATTTGATGCGAAGAAAACTTTTAGACTTTTTTCCTTGTCAGAGCACTGTCAGAGTATCTCATCGTCTTCCTCTCGTCTTCTTCGTCGTCTCTGAACTTAAACATCGTCTTCCTCTTGCTTTCATTGCACGCAAAAGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000502 GO:0001775 GO:0002252 GO:0002263 GO:0002274 GO:0002275 GO:0002283 GO:0002366 GO:0002376 GO:0002443 GO:0002444 GO:0002446 GO:0003674 GO:0005198 GO:0005488 GO:0005515 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005829 GO:0005838 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0006810 GO:0006887 GO:0006950 GO:0006955 GO:0006970 GO:0006972 GO:0007088 GO:0007275 GO:0007346 GO:0007568 GO:0008150 GO:0008152 GO:0008340 GO:0008541 GO:0009056 GO:0009057 GO:0009628 GO:0009896 GO:0009987 GO:0010259 GO:0010498 GO:0010564 GO:0010638 GO:0010965 GO:0012505 GO:0016043 GO:0016192 GO:0016579 GO:0019538 GO:0019941 GO:0022607 GO:0022624 GO:0030071 GO:0030141 GO:0030154 GO:0030163 GO:0031331 GO:0031410 GO:0031597 GO:0031974 GO:0031981 GO:0031982 GO:0031983 GO:0032270 GO:0032436 GO:0032501 GO:0032502 GO:0032940 GO:0032991 GO:0033043 GO:0033044 GO:0033045 GO:0033047 GO:0034515 GO:0034622 GO:0034774 GO:0036211 GO:0036230 GO:0042119 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043248 GO:0043299 GO:0043312 GO:0043412 GO:0043632 GO:0043687 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044433 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0045055 GO:0045321 GO:0045732 GO:0045787 GO:0045840 GO:0045842 GO:0045862 GO:0045931 GO:0046903 GO:0048518 GO:0048522 GO:0048856 GO:0048863 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051128 GO:0051130 GO:0051179 GO:0051234 GO:0051247 GO:0051603 GO:0051726 GO:0051781 GO:0051783 GO:0051785 GO:0051983 GO:0051984 GO:0060205 GO:0062033 GO:0065003 GO:0065007 GO:0070013 GO:0070646 GO:0070647 GO:0071704 GO:0071840 GO:0090068 GO:0097708 GO:0099503 GO:0101002 GO:1901564 GO:1901565 GO:1901575 GO:1901800 GO:1901970 GO:1901987 GO:1901989 GO:1901990 GO:1901992 GO:1902099 GO:1902101 GO:1902494 GO:1903052 GO:1903364 GO:1904813 GO:1905368 GO:1905369 GO:1905818 GO:1905820 GO:2001252
KEGG Pathways
Metabolic & Signaling
ko03050 ko05169 map03050 map05169
Pfam Domains
Protein Families
PCI

Protein Analysis

156

Amino Acids

18.39

Weight (kDa)

11.11

Isoelectric Point (pI)

35.54

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 2 cut(s) 46, 59
AdeI CACNNNGTG 1 cut(s) 263
AgsI TTSAA 1 cut(s) 86
AjnI CCWGG 1 cut(s) 212
AluBI AGCT 1 cut(s) 310
AluI AGCT 1 cut(s) 310
Alw21I GWGCWC 1 cut(s) 374
Alw26I GTCTC 1 cut(s) 421
AoxI GGCC 1 cut(s) 210
ApeKI GCWGC 1 cut(s) 72
ApoI RAATTY 2 cut(s) 46, 59
BbsI GAAGAC 4 cut(s) 157, 386, 397, 428
Bbv12I GWGCWC 1 cut(s) 374
BbvI GCAGC 1 cut(s) 84
BccI CCATC 1 cut(s) 226
BciT130I CCWGG 1 cut(s) 214
BclI TGATCA 1 cut(s) 279
BcoDI GTCTC 1 cut(s) 421
BfaI CTAG 1 cut(s) 299
BfmI CTRYAG 1 cut(s) 189
BisI GCNGC 1 cut(s) 73
BlsI GCNGC 1 cut(s) 74
Bme1390I CCNGG 1 cut(s) 214
BmrFI CCNGG 1 cut(s) 214
BmsI GCATC 2 cut(s) 230, 324
BpiI GAAGAC 4 cut(s) 157, 386, 397, 428
Bse3DI GCAATG 1 cut(s) 450
BseBI CCWGG 1 cut(s) 214
BseGI GGATG 1 cut(s) 38
BseMI GCAATG 1 cut(s) 450
BseXI GCAGC 1 cut(s) 84
BshFI GGCC 1 cut(s) 212
BsiHKAI GWGCWC 1 cut(s) 374
BsmAI GTCTC 1 cut(s) 421
BsmBI CGTCTC 1 cut(s) 421
BsnI GGCC 1 cut(s) 212
Bsp1286I GDGCHC 1 cut(s) 374
Bsp143I GATC 1 cut(s) 279
BspANI GGCC 1 cut(s) 212
BsrDI GCAATG 1 cut(s) 450
BssMI GATC 1 cut(s) 279
Bst2UI CCWGG 1 cut(s) 214
Bst4CI ACNGT 1 cut(s) 376
BstC8I GCNNGC 2 cut(s) 219, 457
BstDEI CTNAG 1 cut(s) 260
BstF5I GGATG 1 cut(s) 38
BstKTI GATC 1 cut(s) 282
BstMAI GTCTC 1 cut(s) 421
BstMBI GATC 1 cut(s) 279
BstMWI GCNNNNNNNGC 2 cut(s) 218, 452
BstNI CCWGG 1 cut(s) 214
BstSCI CCNGG 1 cut(s) 212
BstSFI CTRYAG 1 cut(s) 189
BstV1I GCAGC 1 cut(s) 84
BstV2I GAAGAC 4 cut(s) 157, 386, 397, 428
BsuRI GGCC 1 cut(s) 212
BtsCI GGATG 1 cut(s) 38
BtsIMutI CAGTG 1 cut(s) 372
Cac8I GCNNGC 2 cut(s) 219, 457
CseI GACGC 1 cut(s) 41
CviJI RGCY 6 cut(s) 75, 212, 217, 276, 298, 310
CviKI_1 RGCY 6 cut(s) 75, 212, 217, 276, 298, 310
DdeI CTNAG 1 cut(s) 260
DpnI GATC 1 cut(s) 281
DpnII GATC 1 cut(s) 279
DraIII CACNNNGTG 1 cut(s) 263
EcoRII CCWGG 1 cut(s) 212
Esp3I CGTCTC 1 cut(s) 421
FaiI YATR 5 cut(s) 80, 165, 183, 326, 328
FbaI TGATCA 1 cut(s) 279
Fnu4HI GCNGC 1 cut(s) 73
FokI GGATG 1 cut(s) 25
Fsp4HI GCNGC 1 cut(s) 73
FspBI CTAG 1 cut(s) 299
GluI GCNGC 1 cut(s) 73
HaeIII GGCC 1 cut(s) 212
HgaI GACGC 1 cut(s) 41
HincII GTYRAC 1 cut(s) 304
HindII GTYRAC 1 cut(s) 304
HindIII AAGCTT 1 cut(s) 308
HinfI GANTC 1 cut(s) 124
Hpy166II GTNNAC 2 cut(s) 304, 322
Hpy188I TCNGA 5 cut(s) 92, 253, 369, 380, 421
Hpy8I GTNNAC 2 cut(s) 304, 322
Hpy99I CGWCG 3 cut(s) 135, 179, 416
HpyAV CCTTC 1 cut(s) 288
HpyCH4III ACNGT 1 cut(s) 376
HpyCH4IV ACGT 3 cut(s) 130, 154, 174
HpyCH4V TGCA 2 cut(s) 221, 455
HpyF10VI GCNNNNNNNGC 2 cut(s) 218, 452
HpyF3I CTNAG 1 cut(s) 260
HpySE526I ACGT 3 cut(s) 130, 154, 174
Ksp22I TGATCA 1 cut(s) 279
Kzo9I GATC 1 cut(s) 279
LpnPI CCDG 4 cut(s) 177, 199, 226, 258
Lsp1109I GCAGC 1 cut(s) 84
LweI GCATC 2 cut(s) 230, 324
MaeI CTAG 1 cut(s) 299
MaeII ACGT 3 cut(s) 130, 154, 174
MalI GATC 1 cut(s) 281
MboI GATC 1 cut(s) 279
MboII GAAGA 7 cut(s) 162, 305, 351, 386, 397, 400, 428
MhlI GDGCHC 1 cut(s) 374
MluCI AATT 3 cut(s) 46, 59, 99
MnlI CCTC 4 cut(s) 86, 202, 408, 450
MseI TTAA 2 cut(s) 159, 426
MspR9I CCNGG 1 cut(s) 214
MvaI CCWGG 1 cut(s) 214
MwoI GCNNNNNNNGC 2 cut(s) 218, 452
NdeII GATC 1 cut(s) 279
PcsI WCGNNNNNNNCGW 1 cut(s) 408
PfeI GAWTC 1 cut(s) 124
PkrI GCNGC 1 cut(s) 74
Psp6I CCWGG 1 cut(s) 212
PspGI CCWGG 1 cut(s) 212
SaqAI TTAA 2 cut(s) 159, 426
SatI GCNGC 1 cut(s) 73
Sau3AI GATC 1 cut(s) 279
ScrFI CCNGG 1 cut(s) 214
SduI GDGCHC 1 cut(s) 374
SetI ASST 5 cut(s) 133, 157, 177, 312, 467
SfaNI GCATC 2 cut(s) 230, 324
SfcI CTRYAG 1 cut(s) 189
Sse9I AATT 3 cut(s) 46, 59, 99
SspMI CTAG 1 cut(s) 299
StyD4I CCNGG 1 cut(s) 212
TaaI ACNGT 1 cut(s) 376
TaiI ACGT 3 cut(s) 133, 157, 177
TaqII GACCGA 1 cut(s) 167
TasI AATT 3 cut(s) 46, 59, 99
TfiI GAWTC 1 cut(s) 124
Tru1I TTAA 2 cut(s) 159, 426
Tru9I TTAA 2 cut(s) 159, 426
TscAI CASTG 1 cut(s) 379
TseI GCWGC 1 cut(s) 72
TspDTI ATGAA 1 cut(s) 439
TspGWI ACGGA 1 cut(s) 162
TspRI CASTG 1 cut(s) 379
XapI RAATTY 2 cut(s) 46, 59
XspI CTAG 1 cut(s) 299
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.