Prupe.7G035200_v2.0.a1

proteasome assembly

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp07
OG0019794
Physical Location & Seq
Forward (+)
6537383 .. 6541840
4458 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.7G035200.1

Sequence Viewer

Length: 615 bp
ATGACAAGTATAGCGTTCAACATAAGGAGTGTCGAAGATCATCCCATGACAAATGTTGAGTTACGAAGAAGCATTTTCAGTCATCCTACAGATTTCCCTGAGAAGCGAACTTTCCTTCGACAGCGAGTGGAGGCCAGGCTTGCATCTCTTTTGATGGAAAGCAAGGAGTATTCAGAAGCACTAAGTGTCCTATCAGGCTTGATCAAGGAAGTGAGAAGGCTAGTTGACAAGCTTCTTCTTGTGGACATAGATTTGATGCGAAGCACTGTCAGAGTATCTCATCGTCTTCCTCTCGTCTTCTTCGTCGTCTCTGAACTTAAAACATTGTCTTCCTCTTGCTTTCATTGCACGCAAAAGAAAACAAAAACCATGGTTCAGAAAAATCAAATCTGCAATCAAACATTCACAGAGAAAGAAAGAAGGGTTTTGGATCCTTATATAGACGACGTTTTGTCTGTAAAAATGGTTTCTCAAGACCAAAGTAAGGACTCTGGCTCCAAGAAAAATGGAGGTAAGGAGCTTGGAATGATAACTCCTCAAGAGAAGTCTTCGAAGAAGATGAAGTTTGCTTCATCATCTGCTGAGACAGCCAACCAGCACGACAACAATCTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000502 GO:0001775 GO:0002252 GO:0002263 GO:0002274 GO:0002275 GO:0002283 GO:0002366 GO:0002376 GO:0002443 GO:0002444 GO:0002446 GO:0003674 GO:0005198 GO:0005488 GO:0005515 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005829 GO:0005838 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0006810 GO:0006887 GO:0006950 GO:0006955 GO:0006970 GO:0006972 GO:0007088 GO:0007275 GO:0007346 GO:0007568 GO:0008150 GO:0008152 GO:0008340 GO:0008541 GO:0009056 GO:0009057 GO:0009628 GO:0009896 GO:0009987 GO:0010259 GO:0010498 GO:0010564 GO:0010638 GO:0010965 GO:0012505 GO:0016043 GO:0016192 GO:0016579 GO:0019538 GO:0019941 GO:0022607 GO:0022624 GO:0030071 GO:0030141 GO:0030154 GO:0030163 GO:0031331 GO:0031410 GO:0031597 GO:0031974 GO:0031981 GO:0031982 GO:0031983 GO:0032270 GO:0032436 GO:0032501 GO:0032502 GO:0032940 GO:0032991 GO:0033043 GO:0033044 GO:0033045 GO:0033047 GO:0034515 GO:0034622 GO:0034774 GO:0036211 GO:0036230 GO:0042119 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043248 GO:0043299 GO:0043312 GO:0043412 GO:0043632 GO:0043687 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044433 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0045055 GO:0045321 GO:0045732 GO:0045787 GO:0045840 GO:0045842 GO:0045862 GO:0045931 GO:0046903 GO:0048518 GO:0048522 GO:0048856 GO:0048863 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051128 GO:0051130 GO:0051179 GO:0051234 GO:0051247 GO:0051603 GO:0051726 GO:0051781 GO:0051783 GO:0051785 GO:0051983 GO:0051984 GO:0060205 GO:0062033 GO:0065003 GO:0065007 GO:0070013 GO:0070646 GO:0070647 GO:0071704 GO:0071840 GO:0090068 GO:0097708 GO:0099503 GO:0101002 GO:1901564 GO:1901565 GO:1901575 GO:1901800 GO:1901970 GO:1901987 GO:1901989 GO:1901990 GO:1901992 GO:1902099 GO:1902101 GO:1902494 GO:1903052 GO:1903364 GO:1904813 GO:1905368 GO:1905369 GO:1905818 GO:1905820 GO:2001252
KEGG Pathways
Metabolic & Signaling
ko03050 ko05169 map03050 map05169
Pfam Domains
Protein Families
PCI

Protein Analysis

205

Amino Acids

23.3

Weight (kDa)

9.46

Isoelectric Point (pI)

50.36

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 425, 438
AdeI CACNNNGTG 1 cut(s) 185
AfiI CCNNNNNNNGG 1 cut(s) 484
AgsI TTSAA 1 cut(s) 19
AhdI GACNNNNNGTC 1 cut(s) 451
AjnI CCWGG 1 cut(s) 134
AluBI AGCT 2 cut(s) 232, 520
AluI AGCT 2 cut(s) 232, 520
Alw26I GTCTC 2 cut(s) 313, 578
AlwI GGATC 2 cut(s) 425, 438
AoxI GGCC 1 cut(s) 132
AsuII TTCGAA 1 cut(s) 551
BamHI GGATCC 1 cut(s) 430
BbsI GAAGAC 4 cut(s) 278, 289, 321, 540
BccI CCATC 1 cut(s) 148
BciT130I CCWGG 1 cut(s) 136
BclI TGATCA 1 cut(s) 201
BcoDI GTCTC 2 cut(s) 313, 578
BfaI CTAG 1 cut(s) 221
BfmI CTRYAG 1 cut(s) 87
Bme1390I CCNGG 1 cut(s) 136
BmeRI GACNNNNNGTC 1 cut(s) 451
BmiI GGNNCC 2 cut(s) 432, 496
BmrFI CCNGG 1 cut(s) 136
BmsI GCATC 2 cut(s) 152, 246
BpiI GAAGAC 4 cut(s) 278, 289, 321, 540
Bpu14I TTCGAA 1 cut(s) 551
BpuEI CTTGAG 2 cut(s) 456, 522
BsaJI CCNNGG 1 cut(s) 369
BsaXI ACNNNNNCTCC 2 cut(s) 479, 509
Bsc4I CCNNNNNNNGG 1 cut(s) 484
Bse3DI GCAATG 1 cut(s) 343
BseBI CCWGG 1 cut(s) 136
BseDI CCNNGG 1 cut(s) 369
BseGI GGATG 2 cut(s) 40, 82
BseLI CCNNNNNNNGG 1 cut(s) 484
BseMI GCAATG 1 cut(s) 343
BseMII CTCAG 2 cut(s) 90, 573
BseRI GAGGAG 1 cut(s) 525
BshFI GGCC 1 cut(s) 134
BslI CCNNNNNNNGG 1 cut(s) 484
BsmAI GTCTC 2 cut(s) 313, 578
BsmBI CGTCTC 1 cut(s) 313
BsnI GGCC 1 cut(s) 134
Bsp119I TTCGAA 1 cut(s) 551
Bsp143I GATC 3 cut(s) 37, 201, 430
Bsp19I CCATGG 1 cut(s) 369
BspANI GGCC 1 cut(s) 134
BspCNI CTCAG 2 cut(s) 91, 574
BspLI GGNNCC 2 cut(s) 432, 496
BspPI GGATC 2 cut(s) 425, 438
BspT104I TTCGAA 1 cut(s) 551
BsrDI GCAATG 1 cut(s) 343
BssECI CCNNGG 1 cut(s) 369
BssMI GATC 3 cut(s) 37, 201, 430
BssT1I CCWWGG 1 cut(s) 369
Bst2UI CCWGG 1 cut(s) 136
Bst4CI ACNGT 1 cut(s) 268
BstBI TTCGAA 1 cut(s) 551
BstC8I GCNNGC 2 cut(s) 141, 350
BstDEI CTNAG 3 cut(s) 99, 182, 582
BstDSI CCRYGG 1 cut(s) 369
BstF5I GGATG 2 cut(s) 40, 82
BstKTI GATC 3 cut(s) 40, 204, 433
BstMAI GTCTC 2 cut(s) 313, 578
BstMBI GATC 3 cut(s) 37, 201, 430
BstMWI GCNNNNNNNGC 3 cut(s) 140, 345, 587
BstNI CCWGG 1 cut(s) 136
BstSCI CCNGG 1 cut(s) 134
BstSFI CTRYAG 1 cut(s) 87
BstV2I GAAGAC 4 cut(s) 278, 289, 321, 540
BstX2I RGATCY 1 cut(s) 430
BstYI RGATCY 1 cut(s) 430
BsuRI GGCC 1 cut(s) 134
BtgI CCRYGG 1 cut(s) 369
BtsCI GGATG 2 cut(s) 40, 82
BtsIMutI CAGTG 1 cut(s) 264
Cac8I GCNNGC 2 cut(s) 141, 350
CviAII CATG 2 cut(s) 46, 370
CviJI RGCY 8 cut(s) 134, 139, 198, 220, 232, 495, 520, 590
CviKI_1 RGCY 8 cut(s) 134, 139, 198, 220, 232, 495, 520, 590
DdeI CTNAG 3 cut(s) 99, 182, 582
DpnI GATC 3 cut(s) 39, 203, 432
DpnII GATC 3 cut(s) 37, 201, 430
DraIII CACNNNGTG 1 cut(s) 185
DriI GACNNNNNGTC 1 cut(s) 451
Eam1105I GACNNNNNGTC 1 cut(s) 451
Eco130I CCWWGG 1 cut(s) 369
EcoRII CCWGG 1 cut(s) 134
EcoT14I CCWWGG 1 cut(s) 369
ErhI CCWWGG 1 cut(s) 369
Esp3I CGTCTC 1 cut(s) 313
FaeI CATG 2 cut(s) 49, 373
FaiI YATR 7 cut(s) 11, 23, 47, 248, 371, 438, 440
FatI CATG 2 cut(s) 45, 369
FbaI TGATCA 1 cut(s) 201
FokI GGATG 2 cut(s) 27, 69
FspBI CTAG 1 cut(s) 221
HaeIII GGCC 1 cut(s) 134
Hin1II CATG 2 cut(s) 49, 373
HincII GTYRAC 1 cut(s) 226
HindII GTYRAC 1 cut(s) 226
HindIII AAGCTT 1 cut(s) 230
HinfI GANTC 1 cut(s) 488
Hpy166II GTNNAC 2 cut(s) 226, 244
Hpy188I TCNGA 5 cut(s) 175, 272, 313, 378, 614
Hpy188III TCNNGA 2 cut(s) 473, 539
Hpy8I GTNNAC 2 cut(s) 226, 244
Hpy99I CGWCG 2 cut(s) 308, 449
HpyAV CCTTC 3 cut(s) 125, 210, 414
HpyCH4III ACNGT 1 cut(s) 268
HpyCH4IV ACGT 1 cut(s) 447
HpyCH4V TGCA 3 cut(s) 143, 348, 393
HpyF10VI GCNNNNNNNGC 3 cut(s) 140, 345, 587
HpyF3I CTNAG 3 cut(s) 99, 182, 582
HpySE526I ACGT 1 cut(s) 447
Hsp92II CATG 2 cut(s) 49, 373
Ksp22I TGATCA 1 cut(s) 201
Kzo9I GATC 3 cut(s) 37, 201, 430
LmnI GCTCC 2 cut(s) 500, 517
LpnPI CCDG 6 cut(s) 111, 121, 148, 180, 477, 608
LweI GCATC 2 cut(s) 152, 246
MaeI CTAG 1 cut(s) 221
MaeII ACGT 1 cut(s) 447
MaeIII GTNAC 1 cut(s) 60
MalI GATC 3 cut(s) 39, 203, 432
MboI GATC 3 cut(s) 37, 201, 430
MflI RGATCY 1 cut(s) 430
MlyI GAGTC 1 cut(s) 482
MnlI CCTC 5 cut(s) 124, 300, 343, 503, 546
MseI TTAA 1 cut(s) 318
MspR9I CCNGG 1 cut(s) 136
MvaI CCWGG 1 cut(s) 136
MwoI GCNNNNNNNGC 3 cut(s) 140, 345, 587
NcoI CCATGG 1 cut(s) 369
NdeII GATC 3 cut(s) 37, 201, 430
NlaIII CATG 2 cut(s) 49, 373
NlaIV GGNNCC 2 cut(s) 432, 496
NspV TTCGAA 1 cut(s) 551
PcsI WCGNNNNNNNCGW 1 cut(s) 300
PleI GAGTC 1 cut(s) 482
PpsI GAGTC 1 cut(s) 482
Psp6I CCWGG 1 cut(s) 134
PspGI CCWGG 1 cut(s) 134
PspN4I GGNNCC 2 cut(s) 432, 496
PsuI RGATCY 1 cut(s) 430
SaqAI TTAA 1 cut(s) 318
Sau3AI GATC 3 cut(s) 37, 201, 430
SchI GAGTC 1 cut(s) 482
ScrFI CCNGG 1 cut(s) 136
SetI ASST 4 cut(s) 234, 450, 514, 522
SfaNI GCATC 2 cut(s) 152, 246
SfcI CTRYAG 1 cut(s) 87
SfuI TTCGAA 1 cut(s) 551
SmlI CTYRAG 2 cut(s) 471, 537
SmoI CTYRAG 2 cut(s) 471, 537
SspMI CTAG 1 cut(s) 221
StyD4I CCNGG 1 cut(s) 134
StyI CCWWGG 1 cut(s) 369
TaaI ACNGT 1 cut(s) 268
TaiI ACGT 1 cut(s) 450
TaqI TCGA 3 cut(s) 33, 118, 551
Tru1I TTAA 1 cut(s) 318
Tru9I TTAA 1 cut(s) 318
TscAI CASTG 1 cut(s) 271
TspDTI ATGAA 3 cut(s) 332, 561, 575
TspRI CASTG 1 cut(s) 271
XspI CTAG 1 cut(s) 221
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.