Prupe.2G187100_v2.0.a1

Nonspecific lipid-transfer protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp02
OG0016391
Physical Location & Seq
Reverse (-)
22792437 .. 22792778
342 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.2G187100.1

Sequence Viewer

Length: 342 bp
ATGACTCGCCTCATCGGATTCCTAGCCGTCCTCTTGTTCCTTTCAAGTTCTGCAAATTCGGCGCCTTCATGCCCTACCGTAACCCAGCAAGTGGCCCCGTGTCTCAGTTTTGTGAAAGGTGGAAGTGACACCAAGCCATCCGAAGAGTGTTGCAAAGGGGTTAAGGAGCTGAGTGTCAATGCTAATTCCAGGCCAGACAGGGAAGCTGTGTGCAAGTGCCTTAAGCAAGTGTTGTCTTCCGTTGGAAACTATAATCCCTCTCAAGTCTCTCTTCTTCCCAAGAAATGTGGCCTGTCCCTCAATCTCCCTCCAATTGATAAAAACACTGACTGCTCAAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LTP_2 Tryp_alpha_amyl

Protein Analysis

114

Amino Acids

11.96

Weight (kDa)

8.84

Isoelectric Point (pI)

41.44

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016391)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g16320
malus_domestica MD01G1079700.v1.1 MD07G1148600.v1.1
prunus_persica Prupe.2G187100_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0359331
rosa_laevigata RLG00000027879
rosa_multiflora Rmu_sc0013596.1_g000002 Rmu_sc0017222.1_g000002
rosa_roxburghii Rroxscaffold_4G00297090
rosa_rugosa Rorug01G0270100
rosa_samantha Rh1AG283600 Rh1BG249800 Rh1CG267700 Rh1DG278700
rosa_wichuraiana Rw1G025180

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 61
AccB7I CCANNNNNTGG 1 cut(s) 91
AcsI RAATTY 1 cut(s) 55
AcyI GRCGYC 1 cut(s) 62
AfiI CCNNNNNNNGG 1 cut(s) 91
AflII CTTAAG 1 cut(s) 221
AgsI TTSAA 1 cut(s) 45
AjnI CCWGG 1 cut(s) 188
AluBI AGCT 2 cut(s) 169, 206
AluI AGCT 2 cut(s) 169, 206
Alw26I GTCTC 2 cut(s) 107, 271
AoxI GGCC 3 cut(s) 93, 191, 289
ApoI RAATTY 1 cut(s) 55
AspLEI GCGC 1 cut(s) 64
AspS9I GGNCC 1 cut(s) 94
BanI GGYRCC 1 cut(s) 61
BbsI GAAGAC 1 cut(s) 228
BccI CCATC 1 cut(s) 145
BceAI ACGGC 1 cut(s) 11
BciT130I CCWGG 1 cut(s) 190
BcoDI GTCTC 2 cut(s) 107, 271
BfaI CTAG 1 cut(s) 23
BfoI RGCGCY 1 cut(s) 65
BfrI CTTAAG 1 cut(s) 221
Bme1390I CCNGG 1 cut(s) 190
BmgT120I GGNCC 1 cut(s) 94
BmiI GGNNCC 2 cut(s) 63, 96
BmrFI CCNGG 1 cut(s) 190
BpiI GAAGAC 1 cut(s) 228
BpuEI CTTGAG 1 cut(s) 246
BsaHI GRCGYC 1 cut(s) 62
Bsc4I CCNNNNNNNGG 1 cut(s) 91
BseBI CCWGG 1 cut(s) 190
BseGI GGATG 1 cut(s) 137
BseLI CCNNNNNNNGG 1 cut(s) 91
BseMII CTCAG 2 cut(s) 118, 161
BseYI CCCAGC 1 cut(s) 84
BshFI GGCC 3 cut(s) 95, 193, 291
BshNI GGYRCC 1 cut(s) 61
BslFI GGGAC 1 cut(s) 280
BslI CCNNNNNNNGG 1 cut(s) 91
BsmAI GTCTC 2 cut(s) 107, 271
BsmFI GGGAC 1 cut(s) 280
BsnI GGCC 3 cut(s) 95, 193, 291
BspANI GGCC 3 cut(s) 95, 193, 291
BspCNI CTCAG 2 cut(s) 117, 162
BspLI GGNNCC 2 cut(s) 63, 96
BspT107I GGYRCC 1 cut(s) 61
BspTI CTTAAG 1 cut(s) 221
BssNI GRCGYC 1 cut(s) 62
Bst2UI CCWGG 1 cut(s) 190
Bst4CI ACNGT 1 cut(s) 79
Bst6I CTCTTC 2 cut(s) 138, 276
BstACI GRCGYC 1 cut(s) 62
BstAFI CTTAAG 1 cut(s) 221
BstDEI CTNAG 2 cut(s) 104, 170
BstF5I GGATG 1 cut(s) 137
BstH2I RGCGCY 1 cut(s) 65
BstHHI GCGC 1 cut(s) 64
BstMAI GTCTC 2 cut(s) 107, 271
BstMWI GCNNNNNNNGC 1 cut(s) 59
BstNI CCWGG 1 cut(s) 190
BstSCI CCNGG 1 cut(s) 188
BstV2I GAAGAC 1 cut(s) 228
BsuRI GGCC 3 cut(s) 95, 193, 291
BtsCI GGATG 1 cut(s) 137
BtsIMutI CAGTG 1 cut(s) 324
CfoI GCGC 1 cut(s) 64
Cfr13I GGNCC 1 cut(s) 94
CspCI CAANNNNNGTGG 2 cut(s) 268, 303
CviAII CATG 1 cut(s) 69
CviJI RGCY 7 cut(s) 26, 95, 136, 169, 193, 206, 291
CviKI_1 RGCY 7 cut(s) 26, 95, 136, 169, 193, 206, 291
DdeI CTNAG 2 cut(s) 104, 170
DinI GGCGCC 1 cut(s) 63
Eam1104I CTCTTC 2 cut(s) 138, 276
EarI CTCTTC 2 cut(s) 138, 276
EcoRII CCWGG 1 cut(s) 188
EgeI GGCGCC 1 cut(s) 63
EheI GGCGCC 1 cut(s) 63
FaeI CATG 1 cut(s) 72
FaiI YATR 2 cut(s) 70, 252
FalI AAGNNNNNCTT 2 cut(s) 255, 287
FaqI GGGAC 1 cut(s) 280
FatI CATG 1 cut(s) 68
FokI GGATG 1 cut(s) 124
FspBI CTAG 1 cut(s) 23
GlaI GCGC 1 cut(s) 63
GsaI CCCAGC 1 cut(s) 88
HaeII RGCGCY 1 cut(s) 65
HaeIII GGCC 3 cut(s) 95, 193, 291
HhaI GCGC 1 cut(s) 64
Hin1I GRCGYC 1 cut(s) 62
Hin1II CATG 1 cut(s) 72
Hin6I GCGC 1 cut(s) 62
HinP1I GCGC 1 cut(s) 62
HinfI GANTC 2 cut(s) 4, 18
Hpy188I TCNGA 2 cut(s) 17, 142
HpyAV CCTTC 1 cut(s) 75
HpyCH4III ACNGT 1 cut(s) 79
HpyCH4V TGCA 3 cut(s) 53, 153, 213
HpyF10VI GCNNNNNNNGC 1 cut(s) 59
HpyF3I CTNAG 2 cut(s) 104, 170
Hsp92I GRCGYC 1 cut(s) 62
Hsp92II CATG 1 cut(s) 72
HspAI GCGC 1 cut(s) 62
KasI GGCGCC 1 cut(s) 61
LmnI GCTCC 1 cut(s) 166
LpnPI CCDG 6 cut(s) 98, 175, 184, 202, 207, 305
MaeI CTAG 1 cut(s) 23
MaeIII GTNAC 2 cut(s) 79, 125
MboII GAAGA 4 cut(s) 155, 228, 263, 266
MfeI CAATTG 1 cut(s) 312
MluCI AATT 3 cut(s) 55, 184, 312
Mly113I GGCGCC 1 cut(s) 62
MmeI TCCRAC 1 cut(s) 223
MnlI CCTC 5 cut(s) 20, 41, 268, 308, 318
MseI TTAA 2 cut(s) 162, 222
MspCI CTTAAG 1 cut(s) 221
MspR9I CCNGG 1 cut(s) 190
MunI CAATTG 1 cut(s) 312
MvaI CCWGG 1 cut(s) 190
MwoI GCNNNNNNNGC 1 cut(s) 59
NarI GGCGCC 1 cut(s) 62
NlaIII CATG 1 cut(s) 72
NlaIV GGNNCC 2 cut(s) 63, 96
NmuCI GTSAC 1 cut(s) 125
PfeI GAWTC 1 cut(s) 18
PflMI CCANNNNNTGG 1 cut(s) 91
PluTI GGCGCC 1 cut(s) 65
Psp6I CCWGG 1 cut(s) 188
PspFI CCCAGC 1 cut(s) 84
PspGI CCWGG 1 cut(s) 188
PspN4I GGNNCC 2 cut(s) 63, 96
PspPI GGNCC 1 cut(s) 94
SaqAI TTAA 2 cut(s) 162, 222
Sau96I GGNCC 1 cut(s) 94
ScrFI CCNGG 1 cut(s) 190
SetI ASST 3 cut(s) 121, 171, 208
SfoI GGCGCC 1 cut(s) 63
SmlI CTYRAG 2 cut(s) 221, 261
SmoI CTYRAG 2 cut(s) 221, 261
Sse9I AATT 3 cut(s) 55, 184, 312
SspDI GGCGCC 1 cut(s) 61
SspMI CTAG 1 cut(s) 23
StyD4I CCNGG 1 cut(s) 188
TaaI ACNGT 1 cut(s) 79
TasI AATT 3 cut(s) 55, 184, 312
TfiI GAWTC 1 cut(s) 18
Tru1I TTAA 2 cut(s) 162, 222
Tru9I TTAA 2 cut(s) 162, 222
TscAI CASTG 1 cut(s) 331
TseFI GTSAC 1 cut(s) 125
Tsp45I GTSAC 1 cut(s) 125
TspDTI ATGAA 1 cut(s) 57
TspGWI ACGGA 1 cut(s) 229
TspRI CASTG 1 cut(s) 331
Van91I CCANNNNNTGG 1 cut(s) 91
Vha464I CTTAAG 1 cut(s) 221
XapI RAATTY 1 cut(s) 55
XspI CTAG 1 cut(s) 23
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.