Rorug01G0270100

Nonspecific lipid-transfer protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0016391
Physical Location & Seq
Reverse (-)
38265184 .. 38266055
872 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0270100.1

Sequence Viewer

Length: 660 bp
ATGTTGGTTCACAACCTCACTGAGCTTTCTCAGTTATATCTTGATGGTGTCCTAATATCAGAACAGGGGAGTGAGTTATGCCGAGCCATATCATCTTCCATTCCCAACCTCCAGGTCTTGAGCATGTCCTATTGTGATCTTTCAGGCCCTCTTCTCGAGTCCCTTGGTCAGCTTCAATCTTTATCCGAAATTAGGTTGGACGGGAACAATATCTCTGAGCCAGTTCCAGGGTTATTGCCAAAGTCTATTGGCAATCTCAAAATGTTGTCCACCATACATATTCAGAGTTGCAATTTCAAAGGACTGATTCCCAAGTCAATCAAAAACCATACACAATTGGTTTCTTTGTCAATGTCTGGTAACAAGTTGGAAGGTTCAATTCCGTCATTTAGTGGGGCCAAGAATGTTGTCAACATAGACCTTTCCGACAATGGTCTAACAGGTACTATCAACTTCAGCCACTGGAGAAACCTTACTAAGCTGTCTTCTCTCATTTTGAGCCCTAACAAGCTCGATGGGGATGTCCCAGCGTCTTTGTTTCCTCTTCCCCTATTGTATCATCTATATCTTTCTCTCTCTTCTTTTGTCCACATGTCAGTTTACGATTCGATAAAATTTAGTAGATTATTTACAAATAAAGCAACATTGTTAAATCAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LTP_2 Tryp_alpha_amyl

Protein Analysis

219

Amino Acids

23.88

Weight (kDa)

7.0

Isoelectric Point (pI)

53.21

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_14 PF23598 31 - 121 2.5e-08 Leucine-rich repeat region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016391)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g16320
malus_domestica MD01G1079700.v1.1 MD07G1148600.v1.1
prunus_persica Prupe.2G187100_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0359331
rosa_laevigata RLG00000027879
rosa_multiflora Rmu_sc0013596.1_g000002 Rmu_sc0017222.1_g000002
rosa_roxburghii Rroxscaffold_4G00297090
rosa_rugosa Rorug01G0270100
rosa_samantha Rh1AG283600 Rh1BG249800 Rh1CG267700 Rh1DG278700
rosa_wichuraiana Rw1G025180

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 614
AcuI CTGAAG 1 cut(s) 439
AfaI GTAC 1 cut(s) 445
AfiI CCNNNNNNNGG 2 cut(s) 192, 227
AflIII ACRYGT 1 cut(s) 591
AgsI TTSAA 3 cut(s) 176, 298, 378
AjnI CCWGG 2 cut(s) 111, 226
AluBI AGCT 4 cut(s) 25, 172, 481, 511
AluI AGCT 4 cut(s) 25, 172, 481, 511
AlwNI CAGNNNCTG 1 cut(s) 462
Ama87I CYCGRG 1 cut(s) 155
AoxI GGCC 2 cut(s) 145, 396
ApoI RAATTY 1 cut(s) 614
AspS9I GGNCC 2 cut(s) 146, 396
AvaI CYCGRG 1 cut(s) 155
BanII GRGCYC 1 cut(s) 503
BbsI GAAGAC 1 cut(s) 477
BccI CCATC 2 cut(s) 38, 509
BciT130I CCWGG 2 cut(s) 113, 228
Bme1390I CCNGG 2 cut(s) 113, 228
BmeT110I CYCGRG 1 cut(s) 155
BmgT120I GGNCC 2 cut(s) 146, 396
BmiI GGNNCC 1 cut(s) 397
BmrFI CCNGG 2 cut(s) 113, 228
BoxI GACNNNNGTC 1 cut(s) 432
BpiI GAAGAC 1 cut(s) 477
BpmI CTGGAG 2 cut(s) 95, 484
BpuEI CTTGAG 1 cut(s) 139
BsaJI CCNNGG 2 cut(s) 163, 227
Bsc4I CCNNNNNNNGG 2 cut(s) 192, 227
Bse1I ACTGG 2 cut(s) 221, 467
BseBI CCWGG 2 cut(s) 113, 228
BseDI CCNNGG 2 cut(s) 163, 227
BseGI GGATG 1 cut(s) 526
BseLI CCNNNNNNNGG 2 cut(s) 192, 227
BseMII CTCAG 3 cut(s) 12, 44, 207
BseNI ACTGG 2 cut(s) 221, 467
BseYI CCCAGC 1 cut(s) 526
BshFI GGCC 2 cut(s) 147, 398
BsiHKCI CYCGRG 1 cut(s) 155
BslFI GGGAC 2 cut(s) 145, 509
BslI CCNNNNNNNGG 2 cut(s) 192, 227
BsmFI GGGAC 2 cut(s) 145, 509
BsnI GGCC 2 cut(s) 147, 398
BsoBI CYCGRG 1 cut(s) 155
Bsp1286I GDGCHC 1 cut(s) 503
Bsp143I GATC 1 cut(s) 136
BspANI GGCC 2 cut(s) 147, 398
BspCNI CTCAG 3 cut(s) 13, 43, 208
BspLI GGNNCC 1 cut(s) 397
BsrI ACTGG 2 cut(s) 221, 467
BssECI CCNNGG 2 cut(s) 163, 227
BssMI GATC 1 cut(s) 136
BssT1I CCWWGG 1 cut(s) 163
Bst2UI CCWGG 2 cut(s) 113, 228
Bst6I CTCTTC 3 cut(s) 156, 549, 583
BstDEI CTNAG 4 cut(s) 21, 30, 216, 477
BstF5I GGATG 1 cut(s) 526
BstKTI GATC 1 cut(s) 139
BstMBI GATC 1 cut(s) 136
BstNI CCWGG 2 cut(s) 113, 228
BstNSI RCATGY 2 cut(s) 127, 595
BstPAI GACNNNNGTC 1 cut(s) 432
BstSCI CCNGG 2 cut(s) 111, 226
BstV2I GAAGAC 1 cut(s) 477
BsuRI GGCC 2 cut(s) 147, 398
BtsCI GGATG 1 cut(s) 526
BtsIMutI CAGTG 2 cut(s) 18, 460
CaiI CAGNNNCTG 1 cut(s) 462
Cfr13I GGNCC 2 cut(s) 146, 396
CseI GACGC 1 cut(s) 519
Csp6I GTAC 1 cut(s) 444
CviAII CATG 2 cut(s) 124, 592
CviQI GTAC 1 cut(s) 444
DdeI CTNAG 4 cut(s) 21, 30, 216, 477
DpnI GATC 1 cut(s) 138
DpnII GATC 1 cut(s) 136
Eam1104I CTCTTC 3 cut(s) 156, 549, 583
EarI CTCTTC 3 cut(s) 156, 549, 583
Eco130I CCWWGG 1 cut(s) 163
Eco24I GRGCYC 1 cut(s) 503
Eco57I CTGAAG 1 cut(s) 439
Eco88I CYCGRG 1 cut(s) 155
EcoO109I RGGNCCY 1 cut(s) 146
EcoRII CCWGG 2 cut(s) 111, 226
EcoT14I CCWWGG 1 cut(s) 163
EcoT38I GRGCYC 1 cut(s) 503
ErhI CCWWGG 1 cut(s) 163
FaeI CATG 2 cut(s) 127, 595
FaqI GGGAC 2 cut(s) 145, 509
FatI CATG 2 cut(s) 123, 591
FokI GGATG 1 cut(s) 533
FriOI GRGCYC 1 cut(s) 503
GsaI CCCAGC 1 cut(s) 530
GsuI CTGGAG 2 cut(s) 95, 484
HaeIII GGCC 2 cut(s) 147, 398
HgaI GACGC 1 cut(s) 519
Hin1II CATG 2 cut(s) 127, 595
HincII GTYRAC 1 cut(s) 412
HindII GTYRAC 1 cut(s) 412
HinfI GANTC 3 cut(s) 158, 307, 605
Hpy166II GTNNAC 5 cut(s) 10, 270, 412, 589, 601
Hpy188I TCNGA 5 cut(s) 61, 187, 217, 285, 427
Hpy188III TCNNGA 3 cut(s) 41, 118, 155
Hpy8I GTNNAC 5 cut(s) 10, 270, 412, 589, 601
HpyAV CCTTC 1 cut(s) 365
HpyCH4V TGCA 1 cut(s) 291
HpyF3I CTNAG 4 cut(s) 21, 30, 216, 477
Hsp92II CATG 2 cut(s) 127, 595
Kzo9I GATC 1 cut(s) 136
MaeIII GTNAC 1 cut(s) 359
MalI GATC 1 cut(s) 138
MboI GATC 1 cut(s) 136
MboII GAAGA 5 cut(s) 87, 143, 477, 536, 570
MfeI CAATTG 1 cut(s) 335
MhlI GDGCHC 1 cut(s) 503
MluCI AATT 5 cut(s) 189, 292, 335, 378, 614
MlyI GAGTC 1 cut(s) 167
MmeI TCCRAC 3 cut(s) 177, 348, 450
MnlI CCTC 4 cut(s) 26, 119, 159, 552
MseI TTAA 1 cut(s) 650
MspR9I CCNGG 2 cut(s) 113, 228
MunI CAATTG 1 cut(s) 335
MvaI CCWGG 2 cut(s) 113, 228
NdeII GATC 1 cut(s) 136
NlaIII CATG 2 cut(s) 127, 595
NlaIV GGNNCC 1 cut(s) 397
NmeAIII GCCGAG 1 cut(s) 107
NspI RCATGY 2 cut(s) 127, 595
PaeR7I CTCGAG 1 cut(s) 155
PciI ACATGT 1 cut(s) 591
PfeI GAWTC 2 cut(s) 307, 605
PleI GAGTC 1 cut(s) 166
PpsI GAGTC 1 cut(s) 166
PscI ACATGT 1 cut(s) 591
PshAI GACNNNNGTC 1 cut(s) 432
Psp6I CCWGG 2 cut(s) 111, 226
PspFI CCCAGC 1 cut(s) 526
PspGI CCWGG 2 cut(s) 111, 226
PspN4I GGNNCC 1 cut(s) 397
PspPI GGNCC 2 cut(s) 146, 396
PstNI CAGNNNCTG 1 cut(s) 462
RsaI GTAC 1 cut(s) 445
RsaNI GTAC 1 cut(s) 444
SaqAI TTAA 1 cut(s) 650
Sau3AI GATC 1 cut(s) 136
Sau96I GGNCC 2 cut(s) 146, 396
SchI GAGTC 1 cut(s) 167
ScrFI CCNGG 2 cut(s) 113, 228
SduI GDGCHC 1 cut(s) 503
Sfr274I CTCGAG 1 cut(s) 155
SlaI CTCGAG 1 cut(s) 155
SmlI CTYRAG 2 cut(s) 118, 155
SmoI CTYRAG 2 cut(s) 118, 155
Sse9I AATT 5 cut(s) 189, 292, 335, 378, 614
StyD4I CCNGG 2 cut(s) 111, 226
StyI CCWWGG 1 cut(s) 163
TaqI TCGA 3 cut(s) 156, 513, 608
TasI AATT 5 cut(s) 189, 292, 335, 378, 614
TfiI GAWTC 2 cut(s) 307, 605
Tru1I TTAA 1 cut(s) 650
Tru9I TTAA 1 cut(s) 650
TscAI CASTG 2 cut(s) 25, 467
TspGWI ACGGA 1 cut(s) 372
TspRI CASTG 2 cut(s) 25, 467
XapI RAATTY 1 cut(s) 614
XceI RCATGY 2 cut(s) 127, 595
XhoI CTCGAG 1 cut(s) 155
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.