Rh1CG267700

Nonspecific lipid-transfer protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
OG0016391
Physical Location & Seq
Reverse (-)
53280391 .. 53280862
472 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1CG267700.1

Sequence Viewer

Length: 354 bp
ATGGCTCGCTTGATTGCATTCTTAGCCATTCTCTTCTTCGTTTCGGCTGCACATTCTGCGCCTTCATGCCCCATCATAGCCCAGCAGCTGGCCCCTTGTCTCACTTTTGTGAAGGGTACAACTGAAGAGCTATCTCAGGCTTGTTGCAATGGTGCCAAGGACCTGAGCAACAATGTCCATTCCAACCAAGACAAGAAAGACACATGCCTGTGCCTCAAAAGTGCCTTGTCCAAGATTGGAAACTATGAGCCATCTAGAGTCTCTCTTGTTCCCGAGAAATGTGGCCTGAAGCTCGACCTTCCTCCAATCGATCAAAACACCGACTGCTCCAAGTTTGCTCTAATGGGTTATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LTP_2 Tryp_alpha_amyl

Protein Analysis

117

Amino Acids

12.59

Weight (kDa)

7.52

Isoelectric Point (pI)

39.01

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LTP_2 PF14368 14 - 98 6.2e-07 Probable lipid transfer
Tryp_alpha_amyl PF00234 23 - 109 1.6e-10 Protease inhibitor/seed storage/LTP family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016391)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g16320
malus_domestica MD01G1079700.v1.1 MD07G1148600.v1.1
prunus_persica Prupe.2G187100_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0359331
rosa_laevigata RLG00000027879
rosa_multiflora Rmu_sc0013596.1_g000002 Rmu_sc0017222.1_g000002
rosa_roxburghii Rroxscaffold_4G00297090
rosa_rugosa Rorug01G0270100
rosa_samantha Rh1AG283600 Rh1BG249800 Rh1CG267700 Rh1DG278700
rosa_wichuraiana Rw1G025180

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 152
AccB7I CCANNNNNTGG 1 cut(s) 88
AcuI CTGAAG 2 cut(s) 144, 308
AfaI GTAC 1 cut(s) 118
AfiI CCNNNNNNNGG 1 cut(s) 88
AleI CACNNNNGTG 1 cut(s) 107
AluBI AGCT 3 cut(s) 88, 130, 292
AluI AGCT 3 cut(s) 88, 130, 292
Alw26I GTCTC 2 cut(s) 104, 265
AlwNI CAGNNNCTG 1 cut(s) 88
Ama87I CYCGRG 1 cut(s) 272
AoxI GGCC 2 cut(s) 90, 283
ApeKI GCWGC 2 cut(s) 47, 85
AspLEI GCGC 1 cut(s) 61
AspS9I GGNCC 2 cut(s) 91, 160
AvaI CYCGRG 1 cut(s) 272
AvaII GGWCC 1 cut(s) 160
BanI GGYRCC 1 cut(s) 152
BbvI GCAGC 2 cut(s) 34, 97
BccI CCATC 2 cut(s) 80, 259
BcoDI GTCTC 2 cut(s) 104, 265
BfaI CTAG 1 cut(s) 255
BisI GCNGC 2 cut(s) 48, 86
BlsI GCNGC 2 cut(s) 49, 87
Bme18I GGWCC 1 cut(s) 160
BmeT110I CYCGRG 1 cut(s) 272
BmgT120I GGNCC 2 cut(s) 91, 160
BmiI GGNNCC 2 cut(s) 93, 154
Bpu10I CCTNAGC 1 cut(s) 164
Bsa29I ATCGAT 1 cut(s) 309
BsaJI CCNNGG 1 cut(s) 156
Bsc4I CCNNNNNNNGG 1 cut(s) 88
Bse3DI GCAATG 1 cut(s) 154
BseCI ATCGAT 1 cut(s) 309
BseDI CCNNGG 1 cut(s) 156
BseLI CCNNNNNNNGG 1 cut(s) 88
BseMI GCAATG 1 cut(s) 154
BseMII CTCAG 2 cut(s) 149, 155
BseXI GCAGC 2 cut(s) 34, 97
BseYI CCCAGC 1 cut(s) 81
BsgI GTGCAG 1 cut(s) 33
BshFI GGCC 2 cut(s) 92, 285
BshNI GGYRCC 1 cut(s) 152
BshVI ATCGAT 1 cut(s) 309
BsiHKCI CYCGRG 1 cut(s) 272
BslI CCNNNNNNNGG 1 cut(s) 88
BsmAI GTCTC 2 cut(s) 104, 265
BsmI GAATGC 1 cut(s) 17
BsnI GGCC 2 cut(s) 92, 285
BsoBI CYCGRG 1 cut(s) 272
Bsp143I GATC 1 cut(s) 310
BspANI GGCC 2 cut(s) 92, 285
BspCNI CTCAG 2 cut(s) 148, 156
BspDI ATCGAT 1 cut(s) 309
BspLI GGNNCC 2 cut(s) 93, 154
BspQI GCTCTTC 1 cut(s) 120
BspT107I GGYRCC 1 cut(s) 152
BsrDI GCAATG 1 cut(s) 154
BssECI CCNNGG 1 cut(s) 156
BssMI GATC 1 cut(s) 310
BssT1I CCWWGG 1 cut(s) 156
Bst6I CTCTTC 2 cut(s) 38, 120
BstAPI GCANNNNNTGC 1 cut(s) 56
BstC8I GCNNGC 2 cut(s) 7, 90
BstDEI CTNAG 3 cut(s) 22, 135, 164
BstHHI GCGC 1 cut(s) 61
BstKTI GATC 1 cut(s) 313
BstMAI GTCTC 2 cut(s) 104, 265
BstMBI GATC 1 cut(s) 310
BstMWI GCNNNNNNNGC 2 cut(s) 23, 56
BstNSI RCATGY 1 cut(s) 207
BstV1I GCAGC 2 cut(s) 34, 97
Bsu15I ATCGAT 1 cut(s) 309
BsuRI GGCC 2 cut(s) 92, 285
BsuTUI ATCGAT 1 cut(s) 309
Cac8I GCNNGC 2 cut(s) 7, 90
CaiI CAGNNNCTG 1 cut(s) 88
CfoI GCGC 1 cut(s) 61
Cfr13I GGNCC 2 cut(s) 91, 160
ClaI ATCGAT 1 cut(s) 309
Csp6I GTAC 1 cut(s) 117
CviAII CATG 2 cut(s) 66, 204
CviQI GTAC 1 cut(s) 117
DdeI CTNAG 3 cut(s) 22, 135, 164
DpnI GATC 1 cut(s) 312
DpnII GATC 1 cut(s) 310
Eam1104I CTCTTC 2 cut(s) 38, 120
EarI CTCTTC 2 cut(s) 38, 120
Eco130I CCWWGG 1 cut(s) 156
Eco47I GGWCC 1 cut(s) 160
Eco57I CTGAAG 2 cut(s) 144, 308
Eco88I CYCGRG 1 cut(s) 272
EcoO109I RGGNCCY 1 cut(s) 160
EcoT14I CCWWGG 1 cut(s) 156
ErhI CCWWGG 1 cut(s) 156
FaeI CATG 2 cut(s) 69, 207
FaiI YATR 4 cut(s) 67, 77, 205, 246
FatI CATG 2 cut(s) 65, 203
Fnu4HI GCNGC 2 cut(s) 48, 86
Fsp4HI GCNGC 2 cut(s) 48, 86
FspBI CTAG 1 cut(s) 255
GlaI GCGC 1 cut(s) 60
GluI GCNGC 2 cut(s) 48, 86
GsaI CCCAGC 1 cut(s) 85
HaeIII GGCC 2 cut(s) 92, 285
HhaI GCGC 1 cut(s) 61
Hin1II CATG 2 cut(s) 69, 207
Hin6I GCGC 1 cut(s) 59
HinP1I GCGC 1 cut(s) 59
HinfI GANTC 1 cut(s) 258
Hpy188III TCNNGA 2 cut(s) 255, 272
HpyAV CCTTC 3 cut(s) 72, 106, 308
HpyCH4V TGCA 3 cut(s) 17, 50, 147
HpyF10VI GCNNNNNNNGC 2 cut(s) 23, 56
HpyF3I CTNAG 3 cut(s) 22, 135, 164
Hsp92II CATG 2 cut(s) 69, 207
HspAI GCGC 1 cut(s) 59
Kzo9I GATC 1 cut(s) 310
LguI GCTCTTC 1 cut(s) 120
LmnI GCTCC 1 cut(s) 332
LpnPI CCDG 6 cut(s) 74, 95, 122, 176, 221, 299
Lsp1109I GCAGC 2 cut(s) 34, 97
MaeI CTAG 1 cut(s) 255
MalI GATC 1 cut(s) 312
MboI GATC 1 cut(s) 310
MboII GAAGA 3 cut(s) 25, 28, 137
MlyI GAGTC 1 cut(s) 267
MmeI TCCRAC 1 cut(s) 207
MnlI CCTC 2 cut(s) 224, 312
MslI CAYNNNNRTG 2 cut(s) 107, 208
MspA1I CMGCKG 1 cut(s) 88
Mva1269I GAATGC 1 cut(s) 17
MwoI GCNNNNNNNGC 2 cut(s) 23, 56
NdeII GATC 1 cut(s) 310
NlaIII CATG 2 cut(s) 69, 207
NlaIV GGNNCC 2 cut(s) 93, 154
NspI RCATGY 1 cut(s) 207
OliI CACNNNNGTG 1 cut(s) 107
PciSI GCTCTTC 1 cut(s) 120
PctI GAATGC 1 cut(s) 17
PflMI CCANNNNNTGG 1 cut(s) 88
PkrI GCNGC 2 cut(s) 49, 87
PleI GAGTC 1 cut(s) 266
PpsI GAGTC 1 cut(s) 266
PpuMI RGGWCCY 1 cut(s) 160
Psp5II RGGWCCY 1 cut(s) 160
PspFI CCCAGC 1 cut(s) 81
PspN4I GGNNCC 2 cut(s) 93, 154
PspPI GGNCC 2 cut(s) 91, 160
PspPPI RGGWCCY 1 cut(s) 160
PstNI CAGNNNCTG 1 cut(s) 88
PvuII CAGCTG 1 cut(s) 88
RsaI GTAC 1 cut(s) 118
RsaNI GTAC 1 cut(s) 117
RseI CAYNNNNRTG 2 cut(s) 107, 208
SapI GCTCTTC 1 cut(s) 120
SatI GCNGC 2 cut(s) 48, 86
Sau3AI GATC 1 cut(s) 310
Sau96I GGNCC 2 cut(s) 91, 160
SchI GAGTC 1 cut(s) 267
SetI ASST 5 cut(s) 90, 132, 165, 294, 300
SinI GGWCC 1 cut(s) 160
SmiMI CAYNNNNRTG 2 cut(s) 107, 208
SspMI CTAG 1 cut(s) 255
StyI CCWWGG 1 cut(s) 156
TaqI TCGA 2 cut(s) 294, 309
TseI GCWGC 2 cut(s) 47, 85
TspDTI ATGAA 1 cut(s) 54
Van91I CCANNNNNTGG 1 cut(s) 88
VpaK11BI GGWCC 1 cut(s) 160
XbaI TCTAGA 1 cut(s) 254
XceI RCATGY 1 cut(s) 207
XspI CTAG 1 cut(s) 255
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.