Encoded by
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT5G14990 AT5G14990 |
| fragaria_vesca | FvH4_7g19620 |
| malus_domestica | MD07G1174900.v1.1 |
| prunus_persica | Prupe.2G214000_v2.0.a1 |
| pyrus_communis | pycom01g13580 pycom07g16930 |
| rosa_chinensis | RchiOBHm_Chr1g0363431 |
| rosa_laevigata | RLG00000027566 |
| rosa_multiflora | Rmu_sc0000339.1_g000011 |
| rosa_roxburghii | Rroxscaffold_4G00293190 |
| rosa_rugosa | Rorug01G0306700 |
| rosa_samantha | Rh1AG315800 Rh1BG279100 Rh1CG295500 Rh1DG310200 |
| rosa_wichuraiana | Rw1G027970 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 187 |
| Acc16I | TGCGCA | 1 cut(s) | 48 |
| Acc36I | ACCTGC | 2 cut(s) | 187, 448 |
| AccB1I | GGYRCC | 1 cut(s) | 240 |
| AccI | GTMKAC | 1 cut(s) | 1911 |
| AccII | CGCG | 2 cut(s) | 311, 1683 |
| AccIII | TCCGGA | 1 cut(s) | 1086 |
| AciI | CCGC | 5 cut(s) | 19, 229, 309, 1681, 2406 |
| AclWI | GGATC | 8 cut(s) | 29, 459, 545, 606, 878, 1958, 2389, 2748 |
| AcoI | YGGCCR | 1 cut(s) | 270 |
| AcsI | RAATTY | 9 cut(s) | 517, 1117, 1134, 1462, 2103, 2183, 2248, 2318, 2787 |
| AcuI | CTGAAG | 5 cut(s) | 65, 467, 1014, 1145, 1991 |
| AcyI | GRCGYC | 1 cut(s) | 241 |
| AfaI | GTAC | 3 cut(s) | 307, 880, 1395 |
| AfeI | AGCGCT | 1 cut(s) | 86 |
| AfiI | CCNNNNNNNGG | 7 cut(s) | 18, 196, 633, 1021, 1086, 1684, 2444 |
| AflIII | ACRYGT | 1 cut(s) | 2650 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 691 |
| AjnI | CCWGG | 2 cut(s) | 1212, 1994 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 578, 610 |
| AleI | CACNNNNGTG | 1 cut(s) | 748 |
| Alw21I | GWGCWC | 3 cut(s) | 30, 768, 2574 |
| Alw26I | GTCTC | 6 cut(s) | 155, 1925, 2093, 2723, 2808, 2845 |
| Alw44I | GTGCAC | 2 cut(s) | 26, 2570 |
| AlwI | GGATC | 8 cut(s) | 29, 459, 545, 606, 878, 1958, 2389, 2748 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 202 |
| Aor13HI | TCCGGA | 1 cut(s) | 1086 |
| Aor51HI | AGCGCT | 1 cut(s) | 86 |
| AoxI | GGCC | 4 cut(s) | 270, 647, 1042, 2773 |
| ApaLI | GTGCAC | 2 cut(s) | 26, 2570 |
| ApeKI | GCWGC | 5 cut(s) | 127, 171, 186, 658, 2343 |
| ApoI | RAATTY | 9 cut(s) | 517, 1117, 1134, 1462, 2103, 2183, 2248, 2318, 2787 |
| Asp700I | GAANNNNTTC | 3 cut(s) | 75, 1137, 2106 |
| AspLEI | GCGC | 4 cut(s) | 49, 87, 243, 828 |
| AspS9I | GGNCC | 5 cut(s) | 647, 1210, 1488, 1830, 2563 |
| AsuHPI | GGTGA | 6 cut(s) | 863, 933, 1973, 2350, 2762, 2798 |
| AsuII | TTCGAA | 1 cut(s) | 223 |
| AsuNHI | GCTAGC | 1 cut(s) | 2350 |
| AvaII | GGWCC | 4 cut(s) | 1210, 1488, 1830, 2563 |
| BaeGI | GKGCMC | 2 cut(s) | 30, 2574 |
| BalI | TGGCCA | 1 cut(s) | 272 |
| BanI | GGYRCC | 1 cut(s) | 240 |
| BbsI | GAAGAC | 1 cut(s) | 1773 |
| Bbv12I | GWGCWC | 3 cut(s) | 30, 768, 2574 |
| BbvI | GCAGC | 5 cut(s) | 139, 158, 198, 670, 2355 |
| BceAI | ACGGC | 1 cut(s) | 2452 |
| BciT130I | CCWGG | 2 cut(s) | 1214, 1996 |
| BclI | TGATCA | 4 cut(s) | 1291, 2425, 2752, 2859 |
| BcoDI | GTCTC | 6 cut(s) | 155, 1925, 2093, 2723, 2808, 2845 |
| BfaI | CTAG | 6 cut(s) | 836, 1232, 2351, 2366, 2385, 2700 |
| BfmI | CTRYAG | 1 cut(s) | 2439 |
| BfoI | RGCGCY | 2 cut(s) | 88, 244 |
| BfuAI | ACCTGC | 2 cut(s) | 187, 448 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 906 |
| BglII | AGATCT | 2 cut(s) | 2278, 2713 |
| BisI | GCNGC | 5 cut(s) | 128, 172, 187, 659, 2344 |
| BlsI | GCNGC | 5 cut(s) | 129, 173, 188, 660, 2345 |
| BmcAI | AGTACT | 1 cut(s) | 880 |
| Bme1390I | CCNGG | 2 cut(s) | 1214, 1996 |
| Bme18I | GGWCC | 4 cut(s) | 1210, 1488, 1830, 2563 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 691 |
| BmgT120I | GGNCC | 5 cut(s) | 647, 1210, 1488, 1830, 2563 |
| BmiI | GGNNCC | 4 cut(s) | 242, 1211, 1316, 1832 |
| BmrFI | CCNGG | 2 cut(s) | 1214, 1996 |
| BmsI | GCATC | 6 cut(s) | 6, 48, 1173, 1318, 2128, 2833 |
| BmtI | GCTAGC | 1 cut(s) | 2354 |
| BpiI | GAAGAC | 1 cut(s) | 1773 |
| BpmI | CTGGAG | 1 cut(s) | 2898 |
| Bpu14I | TTCGAA | 1 cut(s) | 223 |
| BpuEI | CTTGAG | 6 cut(s) | 200, 230, 302, 1835, 2626, 2683 |
| BsaAI | YACGTR | 1 cut(s) | 1798 |
| BsaBI | GATNNNNATC | 2 cut(s) | 20, 1332 |
| BsaHI | GRCGYC | 1 cut(s) | 241 |
| BsaI | GGTCTC | 2 cut(s) | 155, 2845 |
| BsaJI | CCNNGG | 3 cut(s) | 273, 901, 1995 |
| BsaWI | WCCGGW | 1 cut(s) | 1086 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 779, 809, 897, 927 |
| Bsc4I | CCNNNNNNNGG | 7 cut(s) | 18, 196, 633, 1021, 1086, 1684, 2444 |
| Bse118I | RCCGGY | 1 cut(s) | 1958 |
| Bse1I | ACTGG | 3 cut(s) | 303, 1919, 2881 |
| Bse3DI | GCAATG | 4 cut(s) | 42, 270, 668, 887 |
| Bse8I | GATNNNNATC | 2 cut(s) | 20, 1332 |
| BseAI | TCCGGA | 1 cut(s) | 1086 |
| BseBI | CCWGG | 2 cut(s) | 1214, 1996 |
| BseDI | CCNNGG | 3 cut(s) | 273, 901, 1995 |
| BseJI | GATNNNNATC | 2 cut(s) | 20, 1332 |
| BseLI | CCNNNNNNNGG | 7 cut(s) | 18, 196, 633, 1021, 1086, 1684, 2444 |
| BseMI | GCAATG | 4 cut(s) | 42, 270, 668, 887 |
| BseNI | ACTGG | 3 cut(s) | 303, 1919, 2881 |
| BseRI | GAGGAG | 3 cut(s) | 407, 776, 2258 |
| BseSI | GKGCMC | 2 cut(s) | 30, 2574 |
| BseXI | GCAGC | 5 cut(s) | 139, 158, 198, 670, 2355 |
| BsgI | GTGCAG | 2 cut(s) | 1119, 2436 |
| Bsh1236I | CGCG | 2 cut(s) | 311, 1683 |
| BshFI | GGCC | 4 cut(s) | 272, 649, 1044, 2775 |
| BshNI | GGYRCC | 1 cut(s) | 240 |
| BsiHKAI | GWGCWC | 3 cut(s) | 30, 768, 2574 |
| BsiSI | CCGG | 2 cut(s) | 1087, 1959 |
| BslFI | GGGAC | 2 cut(s) | 1819, 2185 |
| BslI | CCNNNNNNNGG | 7 cut(s) | 18, 196, 633, 1021, 1086, 1684, 2444 |
| BsmAI | GTCTC | 6 cut(s) | 155, 1925, 2093, 2723, 2808, 2845 |
| BsmFI | GGGAC | 2 cut(s) | 1819, 2185 |
| BsmI | GAATGC | 5 cut(s) | 174, 628, 937, 1775, 1871 |
| BsnI | GGCC | 4 cut(s) | 272, 649, 1044, 2775 |
| Bso31I | GGTCTC | 2 cut(s) | 155, 2845 |
| Bsp119I | TTCGAA | 1 cut(s) | 223 |
| Bsp1286I | GDGCHC | 3 cut(s) | 30, 768, 2574 |
| Bsp13I | TCCGGA | 1 cut(s) | 1086 |
| BspACI | CCGC | 5 cut(s) | 19, 229, 309, 1681, 2406 |
| BspANI | GGCC | 4 cut(s) | 272, 649, 1044, 2775 |
| BspEI | TCCGGA | 1 cut(s) | 1086 |
| BspFNI | CGCG | 2 cut(s) | 311, 1683 |
| BspHI | TCATGA | 4 cut(s) | 714, 1072, 1294, 2176 |
| BspLI | GGNNCC | 4 cut(s) | 242, 1211, 1316, 1832 |
| BspMAI | CTGCAG | 1 cut(s) | 2443 |
| BspMI | ACCTGC | 2 cut(s) | 187, 448 |
| BspOI | GCTAGC | 1 cut(s) | 2354 |
| BspPI | GGATC | 8 cut(s) | 29, 459, 545, 606, 878, 1958, 2389, 2748 |
| BspQI | GCTCTTC | 2 cut(s) | 1104, 1407 |
| BspT104I | TTCGAA | 1 cut(s) | 223 |
| BspT107I | GGYRCC | 1 cut(s) | 240 |
| BspTNI | GGTCTC | 2 cut(s) | 155, 2845 |
| BsrDI | GCAATG | 4 cut(s) | 42, 270, 668, 887 |
| BsrFI | RCCGGY | 1 cut(s) | 1958 |
| BsrI | ACTGG | 3 cut(s) | 303, 1919, 2881 |
| BssAI | RCCGGY | 1 cut(s) | 1958 |
| BssECI | CCNNGG | 3 cut(s) | 273, 901, 1995 |
| BssNI | GRCGYC | 1 cut(s) | 241 |
| BssT1I | CCWWGG | 2 cut(s) | 273, 901 |
| Bst2UI | CCWGG | 2 cut(s) | 1214, 1996 |
| Bst4CI | ACNGT | 3 cut(s) | 736, 1675, 2856 |
| BstACI | GRCGYC | 1 cut(s) | 241 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 1846 |
| BstBAI | YACGTR | 1 cut(s) | 1798 |
| BstBI | TTCGAA | 1 cut(s) | 223 |
| BstC8I | GCNNGC | 4 cut(s) | 1436, 2198, 2348, 2352 |
| BstENI | CCTNNNNNAGG | 2 cut(s) | 1682, 2442 |
| BstFNI | CGCG | 2 cut(s) | 311, 1683 |
| BstH2I | RGCGCY | 2 cut(s) | 88, 244 |
| BstHHI | GCGC | 4 cut(s) | 49, 87, 243, 828 |
| BstMAI | GTCTC | 6 cut(s) | 155, 1925, 2093, 2723, 2808, 2845 |
| BstMWI | GCNNNNNNNGC | 8 cut(s) | 25, 269, 655, 906, 1120, 1846, 2360, 2821 |
| BstNI | CCWGG | 2 cut(s) | 1214, 1996 |
| BstNSI | RCATGY | 2 cut(s) | 2200, 2654 |
| BstSCI | CCNGG | 2 cut(s) | 1212, 1994 |
| BstSFI | CTRYAG | 1 cut(s) | 2439 |
| BstSLI | GKGCMC | 2 cut(s) | 30, 2574 |
| BstUI | CGCG | 2 cut(s) | 311, 1683 |
| BstV1I | GCAGC | 5 cut(s) | 139, 158, 198, 670, 2355 |
| BstV2I | GAAGAC | 1 cut(s) | 1773 |
| BstX2I | RGATCY | 5 cut(s) | 598, 2278, 2381, 2713, 2740 |
| BstYI | RGATCY | 5 cut(s) | 598, 2278, 2381, 2713, 2740 |
| BsuRI | GGCC | 4 cut(s) | 272, 649, 1044, 2775 |
| BtsI | GCAGTG | 2 cut(s) | 293, 2467 |
| BtsIMutI | CAGTG | 3 cut(s) | 293, 453, 2467 |
| BveI | ACCTGC | 2 cut(s) | 187, 448 |
| Cac8I | GCNNGC | 4 cut(s) | 1436, 2198, 2348, 2352 |
| CaiI | CAGNNNCTG | 1 cut(s) | 202 |
| CciI | TCATGA | 4 cut(s) | 714, 1072, 1294, 2176 |
| CfoI | GCGC | 4 cut(s) | 49, 87, 243, 828 |
| Cfr10I | RCCGGY | 1 cut(s) | 1958 |
| Cfr13I | GGNCC | 5 cut(s) | 647, 1210, 1488, 1830, 2563 |
| Csp6I | GTAC | 3 cut(s) | 306, 879, 1394 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 2699, 2734 |
| CviQI | GTAC | 3 cut(s) | 306, 879, 1394 |
| DinI | GGCGCC | 1 cut(s) | 242 |
| DraI | TTTAAA | 2 cut(s) | 987, 1227 |
| DriI | GACNNNNNGTC | 1 cut(s) | 691 |
| EaeI | YGGCCR | 1 cut(s) | 270 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 691 |
| Eco130I | CCWWGG | 2 cut(s) | 273, 901 |
| Eco147I | AGGCCT | 1 cut(s) | 2775 |
| Eco31I | GGTCTC | 2 cut(s) | 155, 2845 |
| Eco32I | GATATC | 2 cut(s) | 99, 2038 |
| Eco47I | GGWCC | 4 cut(s) | 1210, 1488, 1830, 2563 |
| Eco47III | AGCGCT | 1 cut(s) | 86 |
| Eco57I | CTGAAG | 5 cut(s) | 65, 467, 1014, 1145, 1991 |
| EcoNI | CCTNNNNNAGG | 2 cut(s) | 1682, 2442 |
| EcoO109I | RGGNCCY | 1 cut(s) | 1488 |
| EcoRII | CCWGG | 2 cut(s) | 1212, 1994 |
| EcoRV | GATATC | 2 cut(s) | 99, 2038 |
| EcoT14I | CCWWGG | 2 cut(s) | 273, 901 |
| EcoT22I | ATGCAT | 2 cut(s) | 1871, 2143 |
| EgeI | GGCGCC | 1 cut(s) | 242 |
| EheI | GGCGCC | 1 cut(s) | 242 |
| ErhI | CCWWGG | 2 cut(s) | 273, 901 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 63, 95, 2664, 2696 |
| FaqI | GGGAC | 2 cut(s) | 1819, 2185 |
| FauNDI | CATATG | 2 cut(s) | 1338, 1577 |
| FbaI | TGATCA | 4 cut(s) | 1291, 2425, 2752, 2859 |
| FblI | GTMKAC | 1 cut(s) | 1911 |
| Fnu4HI | GCNGC | 5 cut(s) | 128, 172, 187, 659, 2344 |
| Fsp4HI | GCNGC | 5 cut(s) | 128, 172, 187, 659, 2344 |
| FspAI | RTGCGCAY | 1 cut(s) | 48 |
| FspBI | CTAG | 6 cut(s) | 836, 1232, 2351, 2366, 2385, 2700 |
| FspI | TGCGCA | 1 cut(s) | 48 |
| GlaI | GCGC | 4 cut(s) | 48, 86, 242, 827 |
| GluI | GCNGC | 5 cut(s) | 128, 172, 187, 659, 2344 |
| GsuI | CTGGAG | 1 cut(s) | 2898 |
| HaeII | RGCGCY | 2 cut(s) | 88, 244 |
| HaeIII | GGCC | 4 cut(s) | 272, 649, 1044, 2775 |
| HapII | CCGG | 2 cut(s) | 1087, 1959 |
| HhaI | GCGC | 4 cut(s) | 49, 87, 243, 828 |
| Hin1I | GRCGYC | 1 cut(s) | 241 |
| Hin6I | GCGC | 4 cut(s) | 47, 85, 241, 826 |
| HinP1I | GCGC | 4 cut(s) | 47, 85, 241, 826 |
| HincII | GTYRAC | 1 cut(s) | 2313 |
| HindII | GTYRAC | 1 cut(s) | 2313 |
| HindIII | AAGCTT | 3 cut(s) | 320, 479, 1259 |
| HpaI | GTTAAC | 1 cut(s) | 2313 |
| HpaII | CCGG | 2 cut(s) | 1087, 1959 |
| HphI | GGTGA | 6 cut(s) | 863, 933, 1973, 2350, 2762, 2798 |
| Hpy166II | GTNNAC | 8 cut(s) | 28, 820, 1912, 2313, 2411, 2529, 2563, 2572 |
| Hpy8I | GTNNAC | 8 cut(s) | 28, 820, 1912, 2313, 2411, 2529, 2563, 2572 |
| HpyCH4III | ACNGT | 3 cut(s) | 736, 1675, 2856 |
| HpyCH4IV | ACGT | 2 cut(s) | 768, 1797 |
| HpyF10VI | GCNNNNNNNGC | 8 cut(s) | 25, 269, 655, 906, 1120, 1846, 2360, 2821 |
| HpySE526I | ACGT | 2 cut(s) | 768, 1797 |
| Hsp92I | GRCGYC | 1 cut(s) | 241 |
| HspAI | GCGC | 4 cut(s) | 47, 85, 241, 826 |
| KasI | GGCGCC | 1 cut(s) | 240 |
| Kpn2I | TCCGGA | 1 cut(s) | 1086 |
| Ksp22I | TGATCA | 4 cut(s) | 1291, 2425, 2752, 2859 |
| KspAI | GTTAAC | 1 cut(s) | 2313 |
| LguI | GCTCTTC | 2 cut(s) | 1104, 1407 |
| LmnI | GCTCC | 2 cut(s) | 763, 1431 |
| Lsp1109I | GCAGC | 5 cut(s) | 139, 158, 198, 670, 2355 |
| LweI | GCATC | 6 cut(s) | 6, 48, 1173, 1318, 2128, 2833 |
| MaeI | CTAG | 6 cut(s) | 836, 1232, 2351, 2366, 2385, 2700 |
| MaeII | ACGT | 2 cut(s) | 768, 1797 |
| MaeIII | GTNAC | 8 cut(s) | 1357, 1495, 1631, 1712, 1793, 1990, 2214, 2431 |
| MfeI | CAATTG | 2 cut(s) | 651, 2504 |
| MflI | RGATCY | 5 cut(s) | 598, 2278, 2381, 2713, 2740 |
| MhlI | GDGCHC | 3 cut(s) | 30, 768, 2574 |
| MlsI | TGGCCA | 1 cut(s) | 272 |
| MluNI | TGGCCA | 1 cut(s) | 272 |
| Mly113I | GGCGCC | 1 cut(s) | 241 |
| MlyI | GAGTC | 5 cut(s) | 260, 1763, 2095, 2167, 2428 |
| Mox20I | TGGCCA | 1 cut(s) | 272 |
| Mph1103I | ATGCAT | 2 cut(s) | 1871, 2143 |
| MroI | TCCGGA | 1 cut(s) | 1086 |
| MroXI | GAANNNNTTC | 3 cut(s) | 75, 1137, 2106 |
| MscI | TGGCCA | 1 cut(s) | 272 |
| MseI | TTAA | 7 cut(s) | 986, 1226, 1241, 1257, 1263, 1514, 2312 |
| MslI | CAYNNNNRTG | 3 cut(s) | 14, 748, 2460 |
| Msp20I | TGGCCA | 1 cut(s) | 272 |
| MspA1I | CMGCKG | 3 cut(s) | 130, 171, 979 |
| MspI | CCGG | 2 cut(s) | 1087, 1959 |
| MspR9I | CCNGG | 2 cut(s) | 1214, 1996 |
| MunI | CAATTG | 2 cut(s) | 651, 2504 |
| Mva1269I | GAATGC | 5 cut(s) | 174, 628, 937, 1775, 1871 |
| MvaI | CCWGG | 2 cut(s) | 1214, 1996 |
| MvnI | CGCG | 2 cut(s) | 311, 1683 |
| MwoI | GCNNNNNNNGC | 8 cut(s) | 25, 269, 655, 906, 1120, 1846, 2360, 2821 |
| NarI | GGCGCC | 1 cut(s) | 241 |
| NdeI | CATATG | 2 cut(s) | 1338, 1577 |
| NheI | GCTAGC | 1 cut(s) | 2350 |
| NlaIV | GGNNCC | 4 cut(s) | 242, 1211, 1316, 1832 |
| NmuCI | GTSAC | 1 cut(s) | 2431 |
| NsbI | TGCGCA | 1 cut(s) | 48 |
| NsiI | ATGCAT | 2 cut(s) | 1871, 2143 |
| NspI | RCATGY | 2 cut(s) | 2200, 2654 |
| NspV | TTCGAA | 1 cut(s) | 223 |
| OliI | CACNNNNGTG | 1 cut(s) | 748 |
| PaeI | GCATGC | 1 cut(s) | 2200 |
| PagI | TCATGA | 4 cut(s) | 714, 1072, 1294, 2176 |
| PaqCI | CACCTGC | 1 cut(s) | 187 |
| PceI | AGGCCT | 1 cut(s) | 2775 |
| PciI | ACATGT | 1 cut(s) | 2650 |
| PciSI | GCTCTTC | 2 cut(s) | 1104, 1407 |
| PctI | GAATGC | 5 cut(s) | 174, 628, 937, 1775, 1871 |
| PdmI | GAANNNNTTC | 3 cut(s) | 75, 1137, 2106 |
| PfoI | TCCNGGA | 1 cut(s) | 1212 |
| PkrI | GCNGC | 5 cut(s) | 129, 173, 188, 660, 2345 |
| PleI | GAGTC | 5 cut(s) | 259, 1763, 2094, 2167, 2428 |
| PluTI | GGCGCC | 1 cut(s) | 244 |
| PpsI | GAGTC | 5 cut(s) | 259, 1763, 2094, 2167, 2428 |
| Ppu21I | YACGTR | 1 cut(s) | 1798 |
| PpuMI | RGGWCCY | 1 cut(s) | 1488 |
| PscI | ACATGT | 1 cut(s) | 2650 |
| Psp5II | RGGWCCY | 1 cut(s) | 1488 |
| Psp6I | CCWGG | 2 cut(s) | 1212, 1994 |
| PspGI | CCWGG | 2 cut(s) | 1212, 1994 |
| PspN4I | GGNNCC | 4 cut(s) | 242, 1211, 1316, 1832 |
| PspPI | GGNCC | 5 cut(s) | 647, 1210, 1488, 1830, 2563 |
| PspPPI | RGGWCCY | 1 cut(s) | 1488 |
| PstI | CTGCAG | 1 cut(s) | 2443 |
| PstNI | CAGNNNCTG | 1 cut(s) | 202 |
| PsuI | RGATCY | 5 cut(s) | 598, 2278, 2381, 2713, 2740 |
| PvuII | CAGCTG | 3 cut(s) | 130, 171, 979 |
| RsaI | GTAC | 3 cut(s) | 307, 880, 1395 |
| RsaNI | GTAC | 3 cut(s) | 306, 879, 1394 |
| RseI | CAYNNNNRTG | 3 cut(s) | 14, 748, 2460 |
| SapI | GCTCTTC | 2 cut(s) | 1104, 1407 |
| SaqAI | TTAA | 7 cut(s) | 986, 1226, 1241, 1257, 1263, 1514, 2312 |
| SatI | GCNGC | 5 cut(s) | 128, 172, 187, 659, 2344 |
| Sau96I | GGNCC | 5 cut(s) | 647, 1210, 1488, 1830, 2563 |
| ScaI | AGTACT | 1 cut(s) | 880 |
| SchI | GAGTC | 5 cut(s) | 260, 1763, 2095, 2167, 2428 |
| ScrFI | CCNGG | 2 cut(s) | 1214, 1996 |
| SduI | GDGCHC | 3 cut(s) | 30, 768, 2574 |
| SfaNI | GCATC | 6 cut(s) | 6, 48, 1173, 1318, 2128, 2833 |
| SfcI | CTRYAG | 1 cut(s) | 2439 |
| SfoI | GGCGCC | 1 cut(s) | 242 |
| SfuI | TTCGAA | 1 cut(s) | 223 |
| SinI | GGWCC | 4 cut(s) | 1210, 1488, 1830, 2563 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 14, 748, 2460 |
| SmlI | CTYRAG | 6 cut(s) | 179, 245, 317, 1850, 2605, 2662 |
| SmoI | CTYRAG | 6 cut(s) | 179, 245, 317, 1850, 2605, 2662 |
| SphI | GCATGC | 1 cut(s) | 2200 |
| SseBI | AGGCCT | 1 cut(s) | 2775 |
| SsiI | CCGC | 5 cut(s) | 19, 229, 309, 1681, 2406 |
| SspDI | GGCGCC | 1 cut(s) | 240 |
| SspI | AATATT | 1 cut(s) | 1624 |
| SspMI | CTAG | 6 cut(s) | 836, 1232, 2351, 2366, 2385, 2700 |
| StuI | AGGCCT | 1 cut(s) | 2775 |
| StyD4I | CCNGG | 2 cut(s) | 1212, 1994 |
| StyI | CCWWGG | 2 cut(s) | 273, 901 |
| TaaI | ACNGT | 3 cut(s) | 736, 1675, 2856 |
| TaiI | ACGT | 2 cut(s) | 771, 1800 |
| TaqI | TCGA | 3 cut(s) | 223, 1141, 1648 |
| TaqII | GACCGA | 1 cut(s) | 179 |
| TatI | WGTACW | 1 cut(s) | 878 |
| Tru1I | TTAA | 7 cut(s) | 986, 1226, 1241, 1257, 1263, 1514, 2312 |
| Tru9I | TTAA | 7 cut(s) | 986, 1226, 1241, 1257, 1263, 1514, 2312 |
| TscAI | CASTG | 3 cut(s) | 300, 453, 2467 |
| TseFI | GTSAC | 1 cut(s) | 2431 |
| TseI | GCWGC | 5 cut(s) | 127, 171, 186, 658, 2343 |
| Tsp45I | GTSAC | 1 cut(s) | 2431 |
| TspRI | CASTG | 3 cut(s) | 300, 453, 2467 |
| VneI | GTGCAC | 2 cut(s) | 26, 2570 |
| VpaK11BI | GGWCC | 4 cut(s) | 1210, 1488, 1830, 2563 |
| XagI | CCTNNNNNAGG | 2 cut(s) | 1682, 2442 |
| XapI | RAATTY | 9 cut(s) | 517, 1117, 1134, 1462, 2103, 2183, 2248, 2318, 2787 |
| XceI | RCATGY | 2 cut(s) | 2200, 2654 |
| XmiI | GTMKAC | 1 cut(s) | 1911 |
| XmnI | GAANNNNTTC | 3 cut(s) | 75, 1137, 2106 |
| XspI | CTAG | 6 cut(s) | 836, 1232, 2351, 2366, 2385, 2700 |
| ZrmI | AGTACT | 1 cut(s) | 880 |
| Zsp2I | ATGCAT | 2 cut(s) | 1871, 2143 |