Encoded by
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT5G14990 AT5G14990 |
| fragaria_vesca | FvH4_7g19620 |
| malus_domestica | MD07G1174900.v1.1 |
| prunus_persica | Prupe.2G214000_v2.0.a1 |
| pyrus_communis | pycom01g13580 pycom07g16930 |
| rosa_chinensis | RchiOBHm_Chr1g0363431 |
| rosa_laevigata | RLG00000027566 |
| rosa_multiflora | Rmu_sc0000339.1_g000011 |
| rosa_roxburghii | Rroxscaffold_4G00293190 |
| rosa_rugosa | Rorug01G0306700 |
| rosa_samantha | Rh1AG315800 Rh1BG279100 Rh1CG295500 Rh1DG310200 |
| rosa_wichuraiana | Rw1G027970 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccIII | TCCGGA | 1 cut(s) | 108 |
| AclWI | GGATC | 2 cut(s) | 138, 150 |
| AfaI | GTAC | 1 cut(s) | 39 |
| AjnI | CCWGG | 1 cut(s) | 135 |
| AluBI | AGCT | 1 cut(s) | 83 |
| AluI | AGCT | 1 cut(s) | 83 |
| AlwI | GGATC | 2 cut(s) | 138, 150 |
| Aor13HI | TCCGGA | 1 cut(s) | 108 |
| ApeKI | GCWGC | 1 cut(s) | 214 |
| AsuHPI | GGTGA | 1 cut(s) | 195 |
| BbsI | GAAGAC | 1 cut(s) | 158 |
| BbvI | GCAGC | 1 cut(s) | 226 |
| BciT130I | CCWGG | 1 cut(s) | 137 |
| BclI | TGATCA | 1 cut(s) | 249 |
| BfaI | CTAG | 1 cut(s) | 161 |
| BfmI | CTRYAG | 2 cut(s) | 212, 285 |
| BglII | AGATCT | 1 cut(s) | 103 |
| BisI | GCNGC | 1 cut(s) | 215 |
| BlsI | GCNGC | 1 cut(s) | 216 |
| Bme1390I | CCNGG | 1 cut(s) | 137 |
| BmrFI | CCNGG | 1 cut(s) | 137 |
| BmsI | GCATC | 3 cut(s) | 25, 86, 290 |
| BpiI | GAAGAC | 1 cut(s) | 158 |
| BpuEI | CTTGAG | 1 cut(s) | 191 |
| BsaJI | CCNNGG | 1 cut(s) | 136 |
| BsaWI | WCCGGW | 1 cut(s) | 108 |
| Bse1I | ACTGG | 1 cut(s) | 206 |
| BseAI | TCCGGA | 1 cut(s) | 108 |
| BseBI | CCWGG | 1 cut(s) | 137 |
| BseDI | CCNNGG | 1 cut(s) | 136 |
| BseMII | CTCAG | 1 cut(s) | 114 |
| BseNI | ACTGG | 1 cut(s) | 206 |
| BseXI | GCAGC | 1 cut(s) | 226 |
| BsiSI | CCGG | 1 cut(s) | 109 |
| Bsp13I | TCCGGA | 1 cut(s) | 108 |
| Bsp143I | GATC | 4 cut(s) | 103, 130, 142, 249 |
| BspCNI | CTCAG | 1 cut(s) | 115 |
| BspEI | TCCGGA | 1 cut(s) | 108 |
| BspMAI | CTGCAG | 1 cut(s) | 216 |
| BspPI | GGATC | 2 cut(s) | 138, 150 |
| BsrI | ACTGG | 1 cut(s) | 206 |
| BssECI | CCNNGG | 1 cut(s) | 136 |
| BssMI | GATC | 4 cut(s) | 103, 130, 142, 249 |
| Bst2UI | CCWGG | 1 cut(s) | 137 |
| BstDEI | CTNAG | 2 cut(s) | 123, 241 |
| BstKTI | GATC | 4 cut(s) | 106, 133, 145, 252 |
| BstMBI | GATC | 4 cut(s) | 103, 130, 142, 249 |
| BstNI | CCWGG | 1 cut(s) | 137 |
| BstSCI | CCNGG | 1 cut(s) | 135 |
| BstSFI | CTRYAG | 2 cut(s) | 212, 285 |
| BstV1I | GCAGC | 1 cut(s) | 226 |
| BstV2I | GAAGAC | 1 cut(s) | 158 |
| BstX2I | RGATCY | 2 cut(s) | 103, 130 |
| BstYI | RGATCY | 2 cut(s) | 103, 130 |
| BtsIMutI | CAGTG | 1 cut(s) | 283 |
| Csp6I | GTAC | 1 cut(s) | 38 |
| CviAII | CATG | 2 cut(s) | 10, 20 |
| CviJI | RGCY | 2 cut(s) | 83, 116 |
| CviKI_1 | RGCY | 2 cut(s) | 83, 116 |
| CviQI | GTAC | 1 cut(s) | 38 |
| DdeI | CTNAG | 2 cut(s) | 123, 241 |
| DpnI | GATC | 4 cut(s) | 105, 132, 144, 251 |
| DpnII | GATC | 4 cut(s) | 103, 130, 142, 249 |
| EcoRII | CCWGG | 1 cut(s) | 135 |
| FaeI | CATG | 2 cut(s) | 13, 23 |
| FaiI | YATR | 5 cut(s) | 11, 21, 75, 181, 287 |
| FatI | CATG | 2 cut(s) | 9, 19 |
| FbaI | TGATCA | 1 cut(s) | 249 |
| Fnu4HI | GCNGC | 1 cut(s) | 215 |
| Fsp4HI | GCNGC | 1 cut(s) | 215 |
| FspBI | CTAG | 1 cut(s) | 161 |
| GluI | GCNGC | 1 cut(s) | 215 |
| HapII | CCGG | 1 cut(s) | 109 |
| Hin1II | CATG | 2 cut(s) | 13, 23 |
| HindIII | AAGCTT | 1 cut(s) | 81 |
| HinfI | GANTC | 1 cut(s) | 65 |
| HpaII | CCGG | 1 cut(s) | 109 |
| HphI | GGTGA | 1 cut(s) | 195 |
| Hpy188I | TCNGA | 1 cut(s) | 235 |
| Hpy188III | TCNNGA | 3 cut(s) | 109, 170, 253 |
| HpyAV | CCTTC | 3 cut(s) | 84, 106, 250 |
| HpyCH4V | TGCA | 2 cut(s) | 214, 281 |
| HpyF3I | CTNAG | 2 cut(s) | 123, 241 |
| Hsp92II | CATG | 2 cut(s) | 13, 23 |
| Kpn2I | TCCGGA | 1 cut(s) | 108 |
| Ksp22I | TGATCA | 1 cut(s) | 249 |
| Kzo9I | GATC | 4 cut(s) | 103, 130, 142, 249 |
| LpnPI | CCDG | 4 cut(s) | 122, 122, 149, 219 |
| Lsp1109I | GCAGC | 1 cut(s) | 226 |
| LweI | GCATC | 3 cut(s) | 25, 86, 290 |
| MaeI | CTAG | 1 cut(s) | 161 |
| MalI | GATC | 4 cut(s) | 105, 132, 144, 251 |
| MboI | GATC | 4 cut(s) | 103, 130, 142, 249 |
| MboII | GAAGA | 2 cut(s) | 39, 158 |
| MflI | RGATCY | 2 cut(s) | 103, 130 |
| MluCI | AATT | 2 cut(s) | 186, 264 |
| MnlI | CCTC | 2 cut(s) | 118, 220 |
| MroI | TCCGGA | 1 cut(s) | 108 |
| MspI | CCGG | 1 cut(s) | 109 |
| MspR9I | CCNGG | 1 cut(s) | 137 |
| MvaI | CCWGG | 1 cut(s) | 137 |
| NdeII | GATC | 4 cut(s) | 103, 130, 142, 249 |
| NlaIII | CATG | 2 cut(s) | 13, 23 |
| PfeI | GAWTC | 1 cut(s) | 65 |
| PkrI | GCNGC | 1 cut(s) | 216 |
| Psp6I | CCWGG | 1 cut(s) | 135 |
| PspGI | CCWGG | 1 cut(s) | 135 |
| PstI | CTGCAG | 1 cut(s) | 216 |
| PsuI | RGATCY | 2 cut(s) | 103, 130 |
| RsaI | GTAC | 1 cut(s) | 39 |
| RsaNI | GTAC | 1 cut(s) | 38 |
| SatI | GCNGC | 1 cut(s) | 215 |
| Sau3AI | GATC | 4 cut(s) | 103, 130, 142, 249 |
| ScrFI | CCNGG | 1 cut(s) | 137 |
| SetI | ASST | 4 cut(s) | 85, 129, 166, 231 |
| SfaNI | GCATC | 3 cut(s) | 25, 86, 290 |
| SfcI | CTRYAG | 2 cut(s) | 212, 285 |
| SmlI | CTYRAG | 1 cut(s) | 170 |
| SmoI | CTYRAG | 1 cut(s) | 170 |
| Sse9I | AATT | 2 cut(s) | 186, 264 |
| SspMI | CTAG | 1 cut(s) | 161 |
| StyD4I | CCNGG | 1 cut(s) | 135 |
| TasI | AATT | 2 cut(s) | 186, 264 |
| TatI | WGTACW | 1 cut(s) | 37 |
| TfiI | GAWTC | 1 cut(s) | 65 |
| TscAI | CASTG | 1 cut(s) | 283 |
| TseI | GCWGC | 1 cut(s) | 214 |
| TspDTI | ATGAA | 1 cut(s) | 26 |
| TspRI | CASTG | 1 cut(s) | 283 |
| XspI | CTAG | 1 cut(s) | 161 |