Encoded by
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT5G14990 AT5G14990 |
| fragaria_vesca | FvH4_7g19620 |
| malus_domestica | MD07G1174900.v1.1 |
| prunus_persica | Prupe.2G214000_v2.0.a1 |
| pyrus_communis | pycom01g13580 pycom07g16930 |
| rosa_chinensis | RchiOBHm_Chr1g0363431 |
| rosa_laevigata | RLG00000027566 |
| rosa_multiflora | Rmu_sc0000339.1_g000011 |
| rosa_roxburghii | Rroxscaffold_4G00293190 |
| rosa_rugosa | Rorug01G0306700 |
| rosa_samantha | Rh1AG315800 Rh1BG279100 Rh1CG295500 Rh1DG310200 |
| rosa_wichuraiana | Rw1G027970 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 2484 |
| Acc36I | ACCTGC | 3 cut(s) | 418, 1483, 2420 |
| AccB1I | GGYRCC | 1 cut(s) | 826 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 18 |
| AccBSI | CCGCTC | 1 cut(s) | 85 |
| AccI | GTMKAC | 2 cut(s) | 2281, 2588 |
| AccII | CGCG | 3 cut(s) | 222, 795, 2045 |
| AccIII | TCCGGA | 2 cut(s) | 2497, 2778 |
| AclWI | GGATC | 4 cut(s) | 326, 567, 2808, 2820 |
| AcsI | RAATTY | 5 cut(s) | 412, 1044, 1063, 1243, 2623 |
| AcuI | CTGAAG | 7 cut(s) | 215, 924, 1055, 1197, 1370, 2021, 2265 |
| AfaI | GTAC | 4 cut(s) | 347, 755, 2514, 2709 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 18, 1606, 1783, 2504, 2608 |
| AgeI | ACCGGT | 1 cut(s) | 2875 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 2584 |
| AjnI | CCWGG | 4 cut(s) | 101, 1562, 2024, 2805 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 539, 571 |
| AleI | CACNNNNGTG | 1 cut(s) | 1094 |
| Alw21I | GWGCWC | 2 cut(s) | 30, 465 |
| Alw26I | GTCTC | 9 cut(s) | 245, 545, 1160, 1230, 1659, 1808, 1955, 2328, 2905 |
| Alw44I | GTGCAC | 1 cut(s) | 26 |
| AlwI | GGATC | 4 cut(s) | 326, 567, 2808, 2820 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 2792 |
| Ama87I | CYCGRG | 1 cut(s) | 176 |
| Aor13HI | TCCGGA | 2 cut(s) | 2497, 2778 |
| AoxI | GGCC | 2 cut(s) | 608, 952 |
| ApaLI | GTGCAC | 1 cut(s) | 26 |
| ApeKI | GCWGC | 4 cut(s) | 619, 1159, 1688, 2884 |
| ApoI | RAATTY | 5 cut(s) | 412, 1044, 1063, 1243, 2623 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 2390, 2422 |
| AsiGI | ACCGGT | 1 cut(s) | 2875 |
| AspLEI | GCGC | 3 cut(s) | 49, 795, 2045 |
| AspS9I | GGNCC | 2 cut(s) | 608, 891 |
| AsuHPI | GGTGA | 6 cut(s) | 1135, 1736, 2194, 2477, 2632, 2865 |
| AvaI | CYCGRG | 1 cut(s) | 176 |
| AvaII | GGWCC | 1 cut(s) | 891 |
| BaeGI | GKGCMC | 2 cut(s) | 30, 831 |
| BanI | GGYRCC | 1 cut(s) | 826 |
| BbsI | GAAGAC | 2 cut(s) | 2358, 2828 |
| Bbv12I | GWGCWC | 2 cut(s) | 30, 465 |
| BbvI | GCAGC | 4 cut(s) | 631, 1146, 1675, 2896 |
| BccI | CCATC | 5 cut(s) | 250, 508, 1288, 2104, 2581 |
| BciT130I | CCWGG | 4 cut(s) | 103, 1564, 2026, 2807 |
| BciVI | GTATCC | 1 cut(s) | 2381 |
| BclI | TGATCA | 3 cut(s) | 421, 871, 2919 |
| BcoDI | GTCTC | 9 cut(s) | 245, 545, 1160, 1230, 1659, 1808, 1955, 2328, 2905 |
| BfaI | CTAG | 6 cut(s) | 1071, 1130, 1355, 1878, 2445, 2831 |
| BfmI | CTRYAG | 3 cut(s) | 1160, 2882, 2957 |
| BfuAI | ACCTGC | 3 cut(s) | 418, 1483, 2420 |
| BfuI | GTATCC | 1 cut(s) | 2381 |
| BglII | AGATCT | 1 cut(s) | 2773 |
| BisI | GCNGC | 7 cut(s) | 86, 120, 620, 791, 1160, 1689, 2885 |
| BlsI | GCNGC | 7 cut(s) | 87, 121, 621, 792, 1161, 1690, 2886 |
| BmcAI | AGTACT | 1 cut(s) | 755 |
| Bme1390I | CCNGG | 4 cut(s) | 103, 1564, 2026, 2807 |
| Bme18I | GGWCC | 1 cut(s) | 891 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 2584 |
| BmeT110I | CYCGRG | 1 cut(s) | 176 |
| BmgT120I | GGNCC | 2 cut(s) | 608, 891 |
| BmiI | GGNNCC | 1 cut(s) | 828 |
| BmrFI | CCNGG | 4 cut(s) | 103, 1564, 2026, 2807 |
| BmsI | GCATC | 7 cut(s) | 114, 1098, 1141, 1228, 1309, 2179, 2756 |
| BpiI | GAAGAC | 2 cut(s) | 2358, 2828 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 319, 351 |
| BsaBI | GATNNNNATC | 2 cut(s) | 260, 870 |
| BsaI | GGTCTC | 3 cut(s) | 1230, 2328, 2905 |
| BsaJI | CCNNGG | 2 cut(s) | 1563, 2806 |
| BsaWI | WCCGGW | 3 cut(s) | 2497, 2778, 2875 |
| BsaXI | ACNNNNNCTCC | 6 cut(s) | 452, 482, 743, 773, 2583, 2613 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 18, 1606, 1783, 2504, 2608 |
| Bse118I | RCCGGY | 1 cut(s) | 2875 |
| Bse1I | ACTGG | 2 cut(s) | 120, 761 |
| Bse3DI | GCAATG | 2 cut(s) | 42, 629 |
| Bse8I | GATNNNNATC | 2 cut(s) | 260, 870 |
| BseAI | TCCGGA | 2 cut(s) | 2497, 2778 |
| BseBI | CCWGG | 4 cut(s) | 103, 1564, 2026, 2807 |
| BseDI | CCNNGG | 2 cut(s) | 1563, 2806 |
| BseGI | GGATG | 4 cut(s) | 993, 1113, 1156, 2071 |
| BseJI | GATNNNNATC | 2 cut(s) | 260, 870 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 18, 1606, 1783, 2504, 2608 |
| BseMI | GCAATG | 2 cut(s) | 42, 629 |
| BseMII | CTCAG | 5 cut(s) | 243, 591, 1242, 2463, 2784 |
| BseNI | ACTGG | 2 cut(s) | 120, 761 |
| BseRI | GAGGAG | 1 cut(s) | 356 |
| BseSI | GKGCMC | 2 cut(s) | 30, 831 |
| BseXI | GCAGC | 4 cut(s) | 631, 1146, 1675, 2896 |
| BseYI | CCCAGC | 1 cut(s) | 2437 |
| BsgI | GTGCAG | 2 cut(s) | 1564, 1576 |
| Bsh1236I | CGCG | 3 cut(s) | 222, 795, 2045 |
| Bsh1285I | CGRYCG | 1 cut(s) | 226 |
| BshFI | GGCC | 2 cut(s) | 610, 954 |
| BshNI | GGYRCC | 1 cut(s) | 826 |
| BshTI | ACCGGT | 1 cut(s) | 2875 |
| BsiEI | CGRYCG | 1 cut(s) | 226 |
| BsiHKAI | GWGCWC | 2 cut(s) | 30, 465 |
| BsiHKCI | CYCGRG | 1 cut(s) | 176 |
| BsiSI | CCGG | 4 cut(s) | 458, 2498, 2779, 2876 |
| BslFI | GGGAC | 1 cut(s) | 1354 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 18, 1606, 1783, 2504, 2608 |
| BsmAI | GTCTC | 9 cut(s) | 245, 545, 1160, 1230, 1659, 1808, 1955, 2328, 2905 |
| BsmBI | CGTCTC | 1 cut(s) | 245 |
| BsmFI | GGGAC | 1 cut(s) | 1354 |
| BsmI | GAATGC | 1 cut(s) | 1745 |
| BsnI | GGCC | 2 cut(s) | 610, 954 |
| Bso31I | GGTCTC | 3 cut(s) | 1230, 2328, 2905 |
| BsoBI | CYCGRG | 1 cut(s) | 176 |
| Bsp1286I | GDGCHC | 3 cut(s) | 30, 465, 831 |
| Bsp13I | TCCGGA | 2 cut(s) | 2497, 2778 |
| Bsp1407I | TGTACA | 1 cut(s) | 2512 |
| Bsp143I | GATC | 9 cut(s) | 331, 421, 559, 871, 1795, 2773, 2800, 2812, 2919 |
| Bsp68I | TCGCGA | 1 cut(s) | 222 |
| BspANI | GGCC | 2 cut(s) | 610, 954 |
| BspCNI | CTCAG | 5 cut(s) | 244, 592, 1243, 2464, 2785 |
| BspEI | TCCGGA | 2 cut(s) | 2497, 2778 |
| BspFNI | CGCG | 3 cut(s) | 222, 795, 2045 |
| BspHI | TCATGA | 3 cut(s) | 982, 1810, 1957 |
| BspLI | GGNNCC | 1 cut(s) | 828 |
| BspMAI | CTGCAG | 2 cut(s) | 1164, 2886 |
| BspMI | ACCTGC | 3 cut(s) | 418, 1483, 2420 |
| BspPI | GGATC | 4 cut(s) | 326, 567, 2808, 2820 |
| BspT107I | GGYRCC | 1 cut(s) | 826 |
| BspTNI | GGTCTC | 3 cut(s) | 1230, 2328, 2905 |
| BsrBI | CCGCTC | 1 cut(s) | 85 |
| BsrDI | GCAATG | 2 cut(s) | 42, 629 |
| BsrFI | RCCGGY | 1 cut(s) | 2875 |
| BsrGI | TGTACA | 1 cut(s) | 2512 |
| BsrI | ACTGG | 2 cut(s) | 120, 761 |
| BssAI | RCCGGY | 1 cut(s) | 2875 |
| BssECI | CCNNGG | 2 cut(s) | 1563, 2806 |
| BssMI | GATC | 9 cut(s) | 331, 421, 559, 871, 1795, 2773, 2800, 2812, 2919 |
| Bst2UI | CCWGG | 4 cut(s) | 103, 1564, 2026, 2807 |
| Bst4CI | ACNGT | 3 cut(s) | 1597, 1819, 1966 |
| Bst6I | CTCTTC | 8 cut(s) | 379, 924, 1077, 1214, 1563, 1782, 1929, 2607 |
| BstAUI | TGTACA | 1 cut(s) | 2512 |
| BstC8I | GCNNGC | 6 cut(s) | 51, 297, 315, 1774, 1921, 2540 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 1604 |
| BstF5I | GGATG | 4 cut(s) | 993, 1113, 1156, 2071 |
| BstFNI | CGCG | 3 cut(s) | 222, 795, 2045 |
| BstHHI | GCGC | 3 cut(s) | 49, 795, 2045 |
| BstKTI | GATC | 9 cut(s) | 334, 424, 562, 874, 1798, 2776, 2803, 2815, 2922 |
| BstMAI | GTCTC | 9 cut(s) | 245, 545, 1160, 1230, 1659, 1808, 1955, 2328, 2905 |
| BstMBI | GATC | 9 cut(s) | 331, 421, 559, 871, 1795, 2773, 2800, 2812, 2919 |
| BstMCI | CGRYCG | 1 cut(s) | 226 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 616, 625 |
| BstNI | CCWGG | 4 cut(s) | 103, 1564, 2026, 2807 |
| BstNSI | RCATGY | 3 cut(s) | 53, 1776, 1923 |
| BstSCI | CCNGG | 4 cut(s) | 101, 1562, 2024, 2805 |
| BstSFI | CTRYAG | 3 cut(s) | 1160, 2882, 2957 |
| BstSLI | GKGCMC | 2 cut(s) | 30, 831 |
| BstUI | CGCG | 3 cut(s) | 222, 795, 2045 |
| BstV1I | GCAGC | 4 cut(s) | 631, 1146, 1675, 2896 |
| BstV2I | GAAGAC | 2 cut(s) | 2358, 2828 |
| BstX2I | RGATCY | 3 cut(s) | 559, 2773, 2800 |
| BstYI | RGATCY | 3 cut(s) | 559, 2773, 2800 |
| BsuI | GTATCC | 1 cut(s) | 2381 |
| BsuRI | GGCC | 2 cut(s) | 610, 954 |
| BtgZI | GCGATG | 1 cut(s) | 137 |
| BtsCI | GGATG | 4 cut(s) | 993, 1113, 1156, 2071 |
| BtsI | GCAGTG | 3 cut(s) | 190, 1588, 1983 |
| BtsIMutI | CAGTG | 4 cut(s) | 190, 1526, 1588, 1983 |
| BtuMI | TCGCGA | 1 cut(s) | 222 |
| BveI | ACCTGC | 3 cut(s) | 418, 1483, 2420 |
| Cac8I | GCNNGC | 6 cut(s) | 51, 297, 315, 1774, 1921, 2540 |
| CaiI | CAGNNNCTG | 1 cut(s) | 2792 |
| CciI | TCATGA | 3 cut(s) | 982, 1810, 1957 |
| CfoI | GCGC | 3 cut(s) | 49, 795, 2045 |
| Cfr10I | RCCGGY | 1 cut(s) | 2875 |
| Cfr13I | GGNCC | 2 cut(s) | 608, 891 |
| CseI | GACGC | 3 cut(s) | 227, 872, 1844 |
| Csp6I | GTAC | 4 cut(s) | 346, 754, 2513, 2708 |
| CspAI | ACCGGT | 1 cut(s) | 2875 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 710, 745 |
| CviQI | GTAC | 4 cut(s) | 346, 754, 2513, 2708 |
| DpnI | GATC | 9 cut(s) | 333, 423, 561, 873, 1797, 2775, 2802, 2814, 2921 |
| DpnII | GATC | 9 cut(s) | 331, 421, 559, 871, 1795, 2773, 2800, 2812, 2919 |
| DriI | GACNNNNNGTC | 1 cut(s) | 2584 |
| Eam1104I | CTCTTC | 8 cut(s) | 379, 924, 1077, 1214, 1563, 1782, 1929, 2607 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 2584 |
| EarI | CTCTTC | 8 cut(s) | 379, 924, 1077, 1214, 1563, 1782, 1929, 2607 |
| EciI | GGCGGA | 1 cut(s) | 1031 |
| Eco31I | GGTCTC | 3 cut(s) | 1230, 2328, 2905 |
| Eco32I | GATATC | 1 cut(s) | 99 |
| Eco47I | GGWCC | 1 cut(s) | 891 |
| Eco57I | CTGAAG | 7 cut(s) | 215, 924, 1055, 1197, 1370, 2021, 2265 |
| Eco88I | CYCGRG | 1 cut(s) | 176 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 1604 |
| EcoRI | GAATTC | 1 cut(s) | 412 |
| EcoRII | CCWGG | 4 cut(s) | 101, 1562, 2024, 2805 |
| EcoRV | GATATC | 1 cut(s) | 99 |
| EcoT22I | ATGCAT | 2 cut(s) | 2194, 2955 |
| Esp3I | CGTCTC | 1 cut(s) | 245 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 2238, 2270 |
| FaqI | GGGAC | 1 cut(s) | 1354 |
| FauI | CCCGC | 1 cut(s) | 1032 |
| FbaI | TGATCA | 3 cut(s) | 421, 871, 2919 |
| FblI | GTMKAC | 2 cut(s) | 2281, 2588 |
| Fnu4HI | GCNGC | 7 cut(s) | 86, 120, 620, 791, 1160, 1689, 2885 |
| FokI | GGATG | 4 cut(s) | 980, 1120, 1163, 2078 |
| Fsp4HI | GCNGC | 7 cut(s) | 86, 120, 620, 791, 1160, 1689, 2885 |
| FspBI | CTAG | 6 cut(s) | 1071, 1130, 1355, 1878, 2445, 2831 |
| GlaI | GCGC | 3 cut(s) | 48, 794, 2044 |
| GluI | GCNGC | 7 cut(s) | 86, 120, 620, 791, 1160, 1689, 2885 |
| GsaI | CCCAGC | 1 cut(s) | 2441 |
| HaeIII | GGCC | 2 cut(s) | 610, 954 |
| HapII | CCGG | 4 cut(s) | 458, 2498, 2779, 2876 |
| HgaI | GACGC | 3 cut(s) | 227, 872, 1844 |
| HhaI | GCGC | 3 cut(s) | 49, 795, 2045 |
| Hin6I | GCGC | 3 cut(s) | 47, 793, 2043 |
| HinP1I | GCGC | 3 cut(s) | 47, 793, 2043 |
| HincII | GTYRAC | 3 cut(s) | 781, 1834, 1981 |
| HindII | GTYRAC | 3 cut(s) | 781, 1834, 1981 |
| HindIII | AAGCTT | 2 cut(s) | 2413, 2751 |
| HpaII | CCGG | 4 cut(s) | 458, 2498, 2779, 2876 |
| HphI | GGTGA | 6 cut(s) | 1135, 1736, 2194, 2477, 2632, 2865 |
| Hpy166II | GTNNAC | 6 cut(s) | 28, 781, 1834, 1981, 2282, 2589 |
| Hpy8I | GTNNAC | 6 cut(s) | 28, 781, 1834, 1981, 2282, 2589 |
| HpyCH4III | ACNGT | 3 cut(s) | 1597, 1819, 1966 |
| HpyCH4IV | ACGT | 1 cut(s) | 1540 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 616, 625 |
| HpySE526I | ACGT | 1 cut(s) | 1540 |
| HspAI | GCGC | 3 cut(s) | 47, 793, 2043 |
| Kpn2I | TCCGGA | 2 cut(s) | 2497, 2778 |
| Ksp22I | TGATCA | 3 cut(s) | 421, 871, 2919 |
| Kzo9I | GATC | 9 cut(s) | 331, 421, 559, 871, 1795, 2773, 2800, 2812, 2919 |
| LmnI | GCTCC | 2 cut(s) | 460, 517 |
| Lsp1109I | GCAGC | 4 cut(s) | 631, 1146, 1675, 2896 |
| LweI | GCATC | 7 cut(s) | 114, 1098, 1141, 1228, 1309, 2179, 2756 |
| MaeI | CTAG | 6 cut(s) | 1071, 1130, 1355, 1878, 2445, 2831 |
| MaeII | ACGT | 1 cut(s) | 1540 |
| MaeIII | GTNAC | 3 cut(s) | 1405, 1541, 2268 |
| MalI | GATC | 9 cut(s) | 333, 423, 561, 873, 1797, 2775, 2802, 2814, 2921 |
| MbiI | CCGCTC | 1 cut(s) | 85 |
| MboI | GATC | 9 cut(s) | 331, 421, 559, 871, 1795, 2773, 2800, 2812, 2919 |
| MfeI | CAATTG | 1 cut(s) | 128 |
| MflI | RGATCY | 3 cut(s) | 559, 2773, 2800 |
| MhlI | GDGCHC | 3 cut(s) | 30, 465, 831 |
| MluCI | AATT | 9 cut(s) | 128, 412, 1044, 1063, 1135, 1243, 1660, 2603, 2623 |
| MlyI | GAGTC | 6 cut(s) | 257, 1661, 1708, 1849, 2146, 2573 |
| MmeI | TCCRAC | 2 cut(s) | 1443, 2631 |
| Mph1103I | ATGCAT | 2 cut(s) | 2194, 2955 |
| MroI | TCCGGA | 2 cut(s) | 2497, 2778 |
| MseI | TTAA | 4 cut(s) | 470, 2127, 2330, 2567 |
| MslI | CAYNNNNRTG | 2 cut(s) | 1094, 1508 |
| MspA1I | CMGCKG | 3 cut(s) | 889, 1801, 2437 |
| MspI | CCGG | 4 cut(s) | 458, 2498, 2779, 2876 |
| MspR9I | CCNGG | 4 cut(s) | 103, 1564, 2026, 2807 |
| MunI | CAATTG | 1 cut(s) | 128 |
| Mva1269I | GAATGC | 1 cut(s) | 1745 |
| MvaI | CCWGG | 4 cut(s) | 103, 1564, 2026, 2807 |
| MvnI | CGCG | 3 cut(s) | 222, 795, 2045 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 616, 625 |
| NdeII | GATC | 9 cut(s) | 331, 421, 559, 871, 1795, 2773, 2800, 2812, 2919 |
| NlaIV | GGNNCC | 1 cut(s) | 828 |
| NruI | TCGCGA | 1 cut(s) | 222 |
| NsiI | ATGCAT | 2 cut(s) | 2194, 2955 |
| NspI | RCATGY | 3 cut(s) | 53, 1776, 1923 |
| OliI | CACNNNNGTG | 1 cut(s) | 1094 |
| PaeI | GCATGC | 3 cut(s) | 53, 1776, 1923 |
| PaeR7I | CTCGAG | 1 cut(s) | 176 |
| PagI | TCATGA | 3 cut(s) | 982, 1810, 1957 |
| PctI | GAATGC | 1 cut(s) | 1745 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 18 |
| PinAI | ACCGGT | 1 cut(s) | 2875 |
| PkrI | GCNGC | 7 cut(s) | 87, 121, 621, 792, 1161, 1690, 2886 |
| PleI | GAGTC | 6 cut(s) | 256, 1660, 1708, 1849, 2145, 2573 |
| PpsI | GAGTC | 6 cut(s) | 256, 1660, 1708, 1849, 2145, 2573 |
| PsiI | TTATAA | 1 cut(s) | 2484 |
| Psp6I | CCWGG | 4 cut(s) | 101, 1562, 2024, 2805 |
| PspFI | CCCAGC | 1 cut(s) | 2437 |
| PspGI | CCWGG | 4 cut(s) | 101, 1562, 2024, 2805 |
| PspN4I | GGNNCC | 1 cut(s) | 828 |
| PspPI | GGNCC | 2 cut(s) | 608, 891 |
| PstI | CTGCAG | 2 cut(s) | 1164, 2886 |
| PstNI | CAGNNNCTG | 1 cut(s) | 2792 |
| PsuI | RGATCY | 3 cut(s) | 559, 2773, 2800 |
| PvuII | CAGCTG | 2 cut(s) | 1801, 2437 |
| RruI | TCGCGA | 1 cut(s) | 222 |
| RsaI | GTAC | 4 cut(s) | 347, 755, 2514, 2709 |
| RsaNI | GTAC | 4 cut(s) | 346, 754, 2513, 2708 |
| RseI | CAYNNNNRTG | 2 cut(s) | 1094, 1508 |
| SaqAI | TTAA | 4 cut(s) | 470, 2127, 2330, 2567 |
| SatI | GCNGC | 7 cut(s) | 86, 120, 620, 791, 1160, 1689, 2885 |
| Sau3AI | GATC | 9 cut(s) | 331, 421, 559, 871, 1795, 2773, 2800, 2812, 2919 |
| Sau96I | GGNCC | 2 cut(s) | 608, 891 |
| ScaI | AGTACT | 1 cut(s) | 755 |
| SchI | GAGTC | 6 cut(s) | 257, 1661, 1708, 1849, 2146, 2573 |
| ScrFI | CCNGG | 4 cut(s) | 103, 1564, 2026, 2807 |
| SduI | GDGCHC | 3 cut(s) | 30, 465, 831 |
| SfaNI | GCATC | 7 cut(s) | 114, 1098, 1141, 1228, 1309, 2179, 2756 |
| SfcI | CTRYAG | 3 cut(s) | 1160, 2882, 2957 |
| Sfr274I | CTCGAG | 1 cut(s) | 176 |
| SinI | GGWCC | 1 cut(s) | 891 |
| SlaI | CTCGAG | 1 cut(s) | 176 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 1094, 1508 |
| SphI | GCATGC | 3 cut(s) | 53, 1776, 1923 |
| Sse9I | AATT | 9 cut(s) | 128, 412, 1044, 1063, 1135, 1243, 1660, 2603, 2623 |
| SspI | AATATT | 2 cut(s) | 1030, 2859 |
| SspMI | CTAG | 6 cut(s) | 1071, 1130, 1355, 1878, 2445, 2831 |
| StyD4I | CCNGG | 4 cut(s) | 101, 1562, 2024, 2805 |
| TaaI | ACNGT | 3 cut(s) | 1597, 1819, 1966 |
| TaiI | ACGT | 1 cut(s) | 1543 |
| TaqI | TCGA | 3 cut(s) | 8, 65, 177 |
| TasI | AATT | 9 cut(s) | 128, 412, 1044, 1063, 1135, 1243, 1660, 2603, 2623 |
| TatI | WGTACW | 4 cut(s) | 345, 753, 2512, 2707 |
| TauI | GCSGC | 3 cut(s) | 88, 122, 793 |
| Tru1I | TTAA | 4 cut(s) | 470, 2127, 2330, 2567 |
| Tru9I | TTAA | 4 cut(s) | 470, 2127, 2330, 2567 |
| TscAI | CASTG | 4 cut(s) | 190, 1526, 1595, 1990 |
| TseI | GCWGC | 4 cut(s) | 619, 1159, 1688, 2884 |
| TspGWI | ACGGA | 1 cut(s) | 1326 |
| TspRI | CASTG | 4 cut(s) | 190, 1526, 1595, 1990 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 18 |
| VneI | GTGCAC | 1 cut(s) | 26 |
| VpaK11BI | GGWCC | 1 cut(s) | 891 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 1604 |
| XapI | RAATTY | 5 cut(s) | 412, 1044, 1063, 1243, 2623 |
| XceI | RCATGY | 3 cut(s) | 53, 1776, 1923 |
| XhoI | CTCGAG | 1 cut(s) | 176 |
| XmiI | GTMKAC | 2 cut(s) | 2281, 2588 |
| XspI | CTAG | 6 cut(s) | 1071, 1130, 1355, 1878, 2445, 2831 |
| ZrmI | AGTACT | 1 cut(s) | 755 |
| Zsp2I | ATGCAT | 2 cut(s) | 2194, 2955 |