Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr1

Orthogroup ID

OG0014322

Physical Location & Seq

Genomic Coordinates Forward (+)

14001661 .. 14004701

Gene Structure 3041 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom01g13580.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1644 bp

ATGCAGAATGCCATTTTCAAGTCTGATGTCGGGCCAATCGAGCAGCAATGGAGATGCAGTTTTGAGGAAGAAACAATGTCTGTTTTGCTCAAAGGGTTTATGACGGATTTCCAAGAAAAAGAGAATCAGGTTTCTCTTGGCTTGAAGGAGTATTGGTCCGATTTGATGAATGAGGTTGCAAATTTGCTGTTGATTCATTGCAGACGAGCATTGGAGGCAAAAAAACATTCACCAGAAGATTATAGTCATGGAAAGCTGGAAAAGCAGCGGTCTTTAAAGGCTAAAGAGTTAATGCAGGAACTCCATGAAGAGGTAAATAAAGACGAGGGAGGGCATTATAGTGCAGAGGCAGAGGAGCCGAATTTGCTGACGCGAGGAATTCTTCGACAAAAGTTGAATTTGTCTAGCAAGAGAGAAGAGATGGGGATGCAAGAAAACAGCTTGAAAGAAAAGGTCCAAAAATTTATTTTAACACTAGACAAATTAAGAGATTGTAAGTTCCGTCACAAGGAAGAAACTCTTTCGGACCACAGGTTTCTGAAGTTTGATGCAAGTCGCGACAAGAATTTGGAACGTGATACTTTGGAAGATGGATGGGAGAAGATGGATAAAATACCTTATGAAGAACTACAAAATGAGCGGATGAAAGTGGAGCTAGAGCAAGAAGAAGAAGATATGAGAGCCGTGATAACGGAAGGACCTATGTTGCTCTTCTTGAAGGACATGTGCAAGGTTCTCCTCACAGAAGTGGTCAATCAATGGAAGGAGAACATAGAAAGTGTCAGCAATGAATCTCGAACCAGAGAAGATATATATTGCACCATCATTCGCGAGGGAATCACGGATTATGGCTCAAATAGTAAGATTACATTAGTACAGTGTCAGGATTTGAGGGCTGCAAATAGTATATTCCTGGAAGGCACAATGAGAGGACGTATGCTGGACCCTTTTGCAGGAAATGTCCATATTAGACAAGAGATAGAACGGCTTACCACATCCGAGACCATCAAATGTGTAGTTCAAACCGCCAAGGATGAATTGGATCATACTGTTACTACACAGTTTATCCGCAGAAGGTTGATCTTCTTGGTGATCAAGTGGATGACATTATGTGATCACTCACCAGTTCTGCAGCACTATTCCGATTTAGGATTGGGCGCACCACGGCCTGCGCCCACTGGAGGGCGAACGACATCACTATCATCATCACCATCACCATCACCATCACCACCATCACAGCCACCTCTGCCACCATCACAACCACCATCACAGCCACCTCTGCCACCATCACAGCCACCTCTGCCACCATCACAACCACCATCACAGCCACCTCTGCCACCATCACAGCCACCTCTGCCACCATCACAACCACCATCACAGCCACCTCTGCCACCATCACAACCACCATCACAGCCACCTCTGCCACCATCACCACCGCCTCTGCCACCATCACCACCGCCTCTGCCACCTACAAATAGCAAAGGGTCTTCAGGAGGACTGAGTGGTGGACAGAAGGCAGGGATAGTGTTTGGAGTGCTGATTGGGGTAGGACTGATCGGGTTTGGTGGCTTCGTGTACAAGAAACGCCGCGCTAACATTAGACGGAGACGCTATGGAGCTGCAGCCAGGAGAAGCTTTCTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04022 ko04024 ko04062 ko04071 ko04270 ko04310 ko04360 ko04510 ko04530 ko04611 ko04670 ko04810 ko04921 ko05130 ko05131 ko05132 ko05200 ko05205 map04022 map04024 map04062 map04071 map04270 map04310 map04360 map04510 map04530 map04611 map04670 map04810 map04921 map05130 map05131 map05132 map05200 map05205

Pfam Domains

Protein Families

No domains found.

Protein Analysis

548

Amino Acids

61.59

Weight (kDa)

6.86

Isoelectric Point (pI)

76.19

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014322)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G14990 AT5G14990
fragaria_vesca	FvH4_7g19620
malus_domestica	MD07G1174900.v1.1
prunus_persica	Prupe.2G214000_v2.0.a1
pyrus_communis	pycom01g13580 pycom07g16930
rosa_chinensis	RchiOBHm_Chr1g0363431
rosa_laevigata	RLG00000027566
rosa_multiflora	Rmu_sc0000339.1_g000011
rosa_roxburghii	Rroxscaffold_4G00293190
rosa_rugosa	Rorug01G0306700
rosa_samantha	Rh1AG315800 Rh1BG279100 Rh1CG295500 Rh1DG310200
rosa_wichuraiana	Rw1G027970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	640
AccII	CGCG	4 cut(s)	373, 558, 831, 1590
AciI	CCGC	7 cut(s)	268, 640, 1026, 1069, 1436, 1457, 1588
AclWI	GGATC	1 cut(s)	1050
AcsI	RAATTY	6 cut(s)	181, 361, 378, 397, 461, 565
AcuI	CTGAAG	2 cut(s)	560, 1473
AfaI	GTAC	2 cut(s)	876, 1577
AfiI	CCNNNNNNNGG	5 cut(s)	310, 508, 953, 1181, 1182
AflIII	ACRYGT	1 cut(s)	723
AgsI	TTSAA	6 cut(s)	19, 145, 397, 445, 718, 1022
AjnI	CCWGG	2 cut(s)	912, 1625
AleI	CACNNNNGTG	1 cut(s)	746
AluBI	AGCT	5 cut(s)	256, 441, 655, 1619, 1635
AluI	AGCT	5 cut(s)	256, 441, 655, 1619, 1635
Alw26I	GTCTC	2 cut(s)	995, 1600
AlwI	GGATC	1 cut(s)	1050
AoxI	GGCC	2 cut(s)	32, 1166
ApeKI	GCWGC	6 cut(s)	43, 265, 896, 1132, 1619, 1622
ApoI	RAATTY	6 cut(s)	181, 361, 378, 397, 461, 565
AspLEI	GCGC	3 cut(s)	1160, 1174, 1592
AspS9I	GGNCC	6 cut(s)	32, 156, 454, 526, 698, 943
AsuHPI	GGTGA	9 cut(s)	222, 1102, 1113, 1200, 1206, 1212, 1218, 1422, 1443
AvaII	GGWCC	5 cut(s)	156, 454, 526, 698, 943
BbsI	GAAGAC	1 cut(s)	1479
BbvI	GCAGC	6 cut(s)	55, 277, 883, 1144, 1606, 1634
BceAI	ACGGC	3 cut(s)	668, 1001, 1181
BciT130I	CCWGG	2 cut(s)	914, 1627
BclI	TGATCA	2 cut(s)	1092, 1114
BcoDI	GTCTC	2 cut(s)	995, 1600
BfaI	CTAG	3 cut(s)	405, 476, 656
BfmI	CTRYAG	2 cut(s)	1130, 1620
BisI	GCNGC	7 cut(s)	44, 266, 897, 1133, 1588, 1620, 1623
BlsI	GCNGC	7 cut(s)	45, 267, 898, 1134, 1589, 1621, 1624
Bme1390I	CCNGG	2 cut(s)	914, 1627
Bme18I	GGWCC	5 cut(s)	156, 454, 526, 698, 943
BmgT120I	GGNCC	6 cut(s)	32, 156, 454, 526, 698, 943
BmiI	GGNNCC	2 cut(s)	357, 945
BmrFI	CCNGG	2 cut(s)	914, 1627
BmsI	GCATC	3 cut(s)	44, 417, 538
BpiI	GAAGAC	1 cut(s)	1479
BpmI	CTGGAG	1 cut(s)	1200
BsaI	GGTCTC	1 cut(s)	995
BsaJI	CCNNGG	2 cut(s)	1029, 1163
BsaXI	ACNNNNNCTCC	4 cut(s)	43, 73, 140, 170
Bsc4I	CCNNNNNNNGG	5 cut(s)	310, 508, 953, 1181, 1182
Bse1I	ACTGG	2 cut(s)	1124, 1183
Bse3DI	GCAATG	3 cut(s)	53, 196, 793
BseBI	CCWGG	2 cut(s)	914, 1627
BseDI	CCNNGG	2 cut(s)	1029, 1163
BseGI	GGATG	6 cut(s)	432, 599, 648, 995, 1039, 1107
BseLI	CCNNNNNNNGG	5 cut(s)	310, 508, 953, 1181, 1182
BseMI	GCAATG	3 cut(s)	53, 196, 793
BseMII	CTCAG	1 cut(s)	1490
BseNI	ACTGG	2 cut(s)	1124, 1183
BseRI	GAGGAG	2 cut(s)	368, 728
BseXI	GCAGC	6 cut(s)	55, 277, 883, 1144, 1606, 1634
BsgI	GTGCAG	1 cut(s)	363
Bsh1236I	CGCG	4 cut(s)	373, 558, 831, 1590
BshFI	GGCC	2 cut(s)	34, 1168
BslI	CCNNNNNNNGG	5 cut(s)	310, 508, 953, 1181, 1182
BsmAI	GTCTC	2 cut(s)	995, 1600
BsmBI	CGTCTC	1 cut(s)	1600
BsmI	GAATGC	1 cut(s)	13
BsnI	GGCC	2 cut(s)	34, 1168
Bso31I	GGTCTC	1 cut(s)	995
Bsp1407I	TGTACA	1 cut(s)	1575
Bsp143I	GATC	5 cut(s)	1042, 1080, 1092, 1114, 1554
Bsp68I	TCGCGA	2 cut(s)	558, 831
BspACI	CCGC	7 cut(s)	268, 640, 1026, 1069, 1436, 1457, 1588
BspANI	GGCC	2 cut(s)	34, 1168
BspCNI	CTCAG	1 cut(s)	1491
BspFNI	CGCG	4 cut(s)	373, 558, 831, 1590
BspLI	GGNNCC	2 cut(s)	357, 945
BspMAI	CTGCAG	2 cut(s)	1134, 1624
BspPI	GGATC	1 cut(s)	1050
BspQI	GCTCTTC	1 cut(s)	716
BspTNI	GGTCTC	1 cut(s)	995
BsrBI	CCGCTC	1 cut(s)	640
BsrDI	GCAATG	3 cut(s)	53, 196, 793
BsrGI	TGTACA	1 cut(s)	1575
BsrI	ACTGG	2 cut(s)	1124, 1183
BssECI	CCNNGG	2 cut(s)	1029, 1163
BssMI	GATC	5 cut(s)	1042, 1080, 1092, 1114, 1554
BssT1I	CCWWGG	1 cut(s)	1029
Bst2UI	CCWGG	2 cut(s)	914, 1627
Bst4CI	ACNGT	3 cut(s)	879, 1051, 1062
Bst6I	CTCTTC	3 cut(s)	303, 411, 716
BstAUI	TGTACA	1 cut(s)	1575
BstC8I	GCNNGC	1 cut(s)	1170
BstDEI	CTNAG	1 cut(s)	1499
BstDSI	CCRYGG	1 cut(s)	1163
BstENI	CCTNNNNNAGG	1 cut(s)	951
BstF5I	GGATG	6 cut(s)	432, 599, 648, 995, 1039, 1107
BstFNI	CGCG	4 cut(s)	373, 558, 831, 1590
BstHHI	GCGC	3 cut(s)	1160, 1174, 1592
BstKTI	GATC	5 cut(s)	1045, 1083, 1095, 1117, 1557
BstMAI	GTCTC	2 cut(s)	995, 1600
BstMBI	GATC	5 cut(s)	1042, 1080, 1092, 1114, 1554
BstNI	CCWGG	2 cut(s)	914, 1627
BstNSI	RCATGY	1 cut(s)	727
BstSCI	CCNGG	2 cut(s)	912, 1625
BstSFI	CTRYAG	2 cut(s)	1130, 1620
BstUI	CGCG	4 cut(s)	373, 558, 831, 1590
BstV1I	GCAGC	6 cut(s)	55, 277, 883, 1144, 1606, 1634
BstV2I	GAAGAC	1 cut(s)	1479
BsuRI	GGCC	2 cut(s)	34, 1168
BtgI	CCRYGG	1 cut(s)	1163
BtsCI	GGATG	6 cut(s)	432, 599, 648, 995, 1039, 1107
BtsIMutI	CAGTG	2 cut(s)	884, 1176
BtuMI	TCGCGA	2 cut(s)	558, 831
Cac8I	GCNNGC	1 cut(s)	1170
CfoI	GCGC	3 cut(s)	1160, 1174, 1592
Cfr13I	GGNCC	6 cut(s)	32, 156, 454, 526, 698, 943
CseI	GACGC	2 cut(s)	379, 1617
Csp6I	GTAC	2 cut(s)	875, 1576
CviAII	CATG	3 cut(s)	248, 305, 724
CviQI	GTAC	2 cut(s)	875, 1576
DdeI	CTNAG	1 cut(s)	1499
DpnI	GATC	5 cut(s)	1044, 1082, 1094, 1116, 1556
DpnII	GATC	5 cut(s)	1042, 1080, 1092, 1114, 1554
DraI	TTTAAA	1 cut(s)	276
Eam1104I	CTCTTC	3 cut(s)	303, 411, 716
EarI	CTCTTC	3 cut(s)	303, 411, 716
Eco130I	CCWWGG	1 cut(s)	1029
Eco31I	GGTCTC	1 cut(s)	995
Eco47I	GGWCC	5 cut(s)	156, 454, 526, 698, 943
Eco57I	CTGAAG	2 cut(s)	560, 1473
EcoNI	CCTNNNNNAGG	1 cut(s)	951
EcoO109I	RGGNCCY	1 cut(s)	698
EcoRI	GAATTC	1 cut(s)	378
EcoRII	CCWGG	2 cut(s)	912, 1625
EcoT14I	CCWWGG	1 cut(s)	1029
ErhI	CCWWGG	1 cut(s)	1029
Esp3I	CGTCTC	1 cut(s)	1600
FaeI	CATG	3 cut(s)	251, 308, 727
FalI	AAGNNNNNCTT	2 cut(s)	504, 536
FatI	CATG	3 cut(s)	247, 304, 723
FbaI	TGATCA	2 cut(s)	1092, 1114
Fnu4HI	GCNGC	7 cut(s)	44, 266, 897, 1133, 1588, 1620, 1623
FokI	GGATG	6 cut(s)	439, 606, 655, 982, 1046, 1114
Fsp4HI	GCNGC	7 cut(s)	44, 266, 897, 1133, 1588, 1620, 1623
FspBI	CTAG	3 cut(s)	405, 476, 656
GlaI	GCGC	3 cut(s)	1159, 1173, 1591
GluI	GCNGC	7 cut(s)	44, 266, 897, 1133, 1588, 1620, 1623
GsuI	CTGGAG	1 cut(s)	1200
HaeIII	GGCC	2 cut(s)	34, 1168
HgaI	GACGC	2 cut(s)	379, 1617
HhaI	GCGC	3 cut(s)	1160, 1174, 1592
Hin1II	CATG	3 cut(s)	251, 308, 727
Hin6I	GCGC	3 cut(s)	1158, 1172, 1590
HinP1I	GCGC	3 cut(s)	1158, 1172, 1590
HindIII	AAGCTT	1 cut(s)	1633
HinfI	GANTC	4 cut(s)	124, 193, 791, 837
HphI	GGTGA	9 cut(s)	222, 1102, 1113, 1200, 1206, 1212, 1218, 1422, 1443
Hpy166II	GTNNAC	2 cut(s)	1508, 1576
Hpy188I	TCNGA	6 cut(s)	25, 160, 526, 540, 1000, 1144
Hpy188III	TCNNGA	6 cut(s)	557, 715, 795, 830, 884, 1491
Hpy8I	GTNNAC	2 cut(s)	1508, 1576
HpyAV	CCTTC	7 cut(s)	139, 689, 712, 757, 911, 1068, 1507
HpyCH4III	ACNGT	3 cut(s)	879, 1051, 1062
HpyCH4IV	ACGT	2 cut(s)	574, 934
HpyF3I	CTNAG	1 cut(s)	1499
HpySE526I	ACGT	2 cut(s)	574, 934
Hsp92II	CATG	3 cut(s)	251, 308, 727
HspAI	GCGC	3 cut(s)	1158, 1172, 1590
Ksp22I	TGATCA	2 cut(s)	1092, 1114
Kzo9I	GATC	5 cut(s)	1042, 1080, 1092, 1114, 1554
LguI	GCTCTTC	1 cut(s)	716
LmnI	GCTCC	3 cut(s)	355, 652, 1616
Lsp1109I	GCAGC	6 cut(s)	55, 277, 883, 1144, 1606, 1634
LweI	GCATC	3 cut(s)	44, 417, 538
MaeI	CTAG	3 cut(s)	405, 476, 656
MaeII	ACGT	2 cut(s)	574, 934
MaeIII	GTNAC	2 cut(s)	503, 1051
MalI	GATC	5 cut(s)	1044, 1082, 1094, 1116, 1556
MbiI	CCGCTC	1 cut(s)	640
MboI	GATC	5 cut(s)	1042, 1080, 1092, 1114, 1554
MluCI	AATT	8 cut(s)	181, 361, 378, 397, 461, 482, 565, 1037
MseI	TTAA	4 cut(s)	275, 290, 470, 485
MslI	CAYNNNNRTG	2 cut(s)	339, 746
MspA1I	CMGCKG	1 cut(s)	268
MspR9I	CCNGG	2 cut(s)	914, 1627
Mva1269I	GAATGC	1 cut(s)	13
MvaI	CCWGG	2 cut(s)	914, 1627
MvnI	CGCG	4 cut(s)	373, 558, 831, 1590
NdeII	GATC	5 cut(s)	1042, 1080, 1092, 1114, 1554
NlaIII	CATG	3 cut(s)	251, 308, 727
NlaIV	GGNNCC	2 cut(s)	357, 945
NmuCI	GTSAC	1 cut(s)	503
NruI	TCGCGA	2 cut(s)	558, 831
NspI	RCATGY	1 cut(s)	727
OliI	CACNNNNGTG	1 cut(s)	746
PciI	ACATGT	1 cut(s)	723
PciSI	GCTCTTC	1 cut(s)	716
PcsI	WCGNNNNNNNCGW	1 cut(s)	36
PctI	GAATGC	1 cut(s)	13
PfeI	GAWTC	4 cut(s)	124, 193, 791, 837
PfoI	TCCNGGA	1 cut(s)	912
PkrI	GCNGC	7 cut(s)	45, 267, 898, 1134, 1589, 1621, 1624
PpuMI	RGGWCCY	1 cut(s)	698
PscI	ACATGT	1 cut(s)	723
Psp5II	RGGWCCY	1 cut(s)	698
Psp6I	CCWGG	2 cut(s)	912, 1625
PspGI	CCWGG	2 cut(s)	912, 1625
PspN4I	GGNNCC	2 cut(s)	357, 945
PspPI	GGNCC	6 cut(s)	32, 156, 454, 526, 698, 943
PspPPI	RGGWCCY	1 cut(s)	698
PstI	CTGCAG	2 cut(s)	1134, 1624
RruI	TCGCGA	2 cut(s)	558, 831
RsaI	GTAC	2 cut(s)	876, 1577
RsaNI	GTAC	2 cut(s)	875, 1576
RseI	CAYNNNNRTG	2 cut(s)	339, 746
SapI	GCTCTTC	1 cut(s)	716
SaqAI	TTAA	4 cut(s)	275, 290, 470, 485
SatI	GCNGC	7 cut(s)	44, 266, 897, 1133, 1588, 1620, 1623
Sau3AI	GATC	5 cut(s)	1042, 1080, 1092, 1114, 1554
Sau96I	GGNCC	6 cut(s)	32, 156, 454, 526, 698, 943
ScrFI	CCNGG	2 cut(s)	914, 1627
SfaNI	GCATC	3 cut(s)	44, 417, 538
SfcI	CTRYAG	2 cut(s)	1130, 1620
SinI	GGWCC	5 cut(s)	156, 454, 526, 698, 943
SmiMI	CAYNNNNRTG	2 cut(s)	339, 746
Sse9I	AATT	8 cut(s)	181, 361, 378, 397, 461, 482, 565, 1037
SsiI	CCGC	7 cut(s)	268, 640, 1026, 1069, 1436, 1457, 1588
SspMI	CTAG	3 cut(s)	405, 476, 656
StyD4I	CCNGG	2 cut(s)	912, 1625
StyI	CCWWGG	1 cut(s)	1029
TaaI	ACNGT	3 cut(s)	879, 1051, 1062
TaiI	ACGT	2 cut(s)	577, 937
TaqI	TCGA	3 cut(s)	39, 385, 796
TasI	AATT	8 cut(s)	181, 361, 378, 397, 461, 482, 565, 1037
TatI	WGTACW	2 cut(s)	874, 1575
TauI	GCSGC	1 cut(s)	1590
TfiI	GAWTC	4 cut(s)	124, 193, 791, 837
Tru1I	TTAA	4 cut(s)	275, 290, 470, 485
Tru9I	TTAA	4 cut(s)	275, 290, 470, 485
TscAI	CASTG	2 cut(s)	884, 1183
TseFI	GTSAC	1 cut(s)	503
TseI	GCWGC	6 cut(s)	43, 265, 896, 1132, 1619, 1622
Tsp45I	GTSAC	1 cut(s)	503
TspDTI	ATGAA	7 cut(s)	182, 185, 321, 636, 659, 804, 1050
TspGWI	ACGGA	5 cut(s)	119, 491, 707, 857, 1618
TspRI	CASTG	2 cut(s)	884, 1183
VpaK11BI	GGWCC	5 cut(s)	156, 454, 526, 698, 943
XagI	CCTNNNNNAGG	1 cut(s)	951
XapI	RAATTY	6 cut(s)	181, 361, 378, 397, 461, 565
XceI	RCATGY	1 cut(s)	727
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1036
XspI	CTAG	3 cut(s)	405, 476, 656

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.