Encoded by
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT5G14990 AT5G14990 |
| fragaria_vesca | FvH4_7g19620 |
| malus_domestica | MD07G1174900.v1.1 |
| prunus_persica | Prupe.2G214000_v2.0.a1 |
| pyrus_communis | pycom01g13580 pycom07g16930 |
| rosa_chinensis | RchiOBHm_Chr1g0363431 |
| rosa_laevigata | RLG00000027566 |
| rosa_multiflora | Rmu_sc0000339.1_g000011 |
| rosa_roxburghii | Rroxscaffold_4G00293190 |
| rosa_rugosa | Rorug01G0306700 |
| rosa_samantha | Rh1AG315800 Rh1BG279100 Rh1CG295500 Rh1DG310200 |
| rosa_wichuraiana | Rw1G027970 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 2493 |
| Acc36I | ACCTGC | 3 cut(s) | 418, 1492, 2429 |
| AccB1I | GGYRCC | 1 cut(s) | 835 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 18 |
| AccBSI | CCGCTC | 1 cut(s) | 85 |
| AccI | GTMKAC | 2 cut(s) | 2290, 2597 |
| AccII | CGCG | 2 cut(s) | 804, 2054 |
| AccIII | TCCGGA | 2 cut(s) | 2506, 2787 |
| AclWI | GGATC | 4 cut(s) | 326, 576, 2817, 2829 |
| AcsI | RAATTY | 5 cut(s) | 412, 1053, 1072, 1252, 2632 |
| AcuI | CTGAAG | 7 cut(s) | 215, 933, 1064, 1206, 1379, 2030, 2274 |
| AfaI | GTAC | 3 cut(s) | 347, 2523, 2718 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 18, 1615, 1792, 2513, 2617 |
| AgeI | ACCGGT | 1 cut(s) | 2884 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 2593 |
| AjnI | CCWGG | 5 cut(s) | 101, 764, 1571, 2033, 2814 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 548, 580 |
| AleI | CACNNNNGTG | 2 cut(s) | 1103, 1517 |
| Alw21I | GWGCWC | 2 cut(s) | 30, 465 |
| Alw26I | GTCTC | 9 cut(s) | 245, 554, 1169, 1239, 1668, 1817, 1964, 2337, 2914 |
| Alw44I | GTGCAC | 1 cut(s) | 26 |
| AlwI | GGATC | 4 cut(s) | 326, 576, 2817, 2829 |
| Ama87I | CYCGRG | 1 cut(s) | 176 |
| Aor13HI | TCCGGA | 2 cut(s) | 2506, 2787 |
| AoxI | GGCC | 2 cut(s) | 617, 961 |
| ApaLI | GTGCAC | 1 cut(s) | 26 |
| ApeKI | GCWGC | 5 cut(s) | 628, 1168, 1697, 1847, 2893 |
| ApoI | RAATTY | 5 cut(s) | 412, 1053, 1072, 1252, 2632 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 2399, 2431 |
| AsiGI | ACCGGT | 1 cut(s) | 2884 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 1056, 1479 |
| AspLEI | GCGC | 3 cut(s) | 49, 804, 2054 |
| AspS9I | GGNCC | 2 cut(s) | 617, 900 |
| AsuHPI | GGTGA | 6 cut(s) | 1144, 1625, 2203, 2486, 2641, 2874 |
| AvaI | CYCGRG | 1 cut(s) | 176 |
| AvaII | GGWCC | 1 cut(s) | 900 |
| BaeGI | GKGCMC | 2 cut(s) | 30, 840 |
| BanI | GGYRCC | 1 cut(s) | 835 |
| BbsI | GAAGAC | 2 cut(s) | 2367, 2837 |
| Bbv12I | GWGCWC | 2 cut(s) | 30, 465 |
| BbvI | GCAGC | 5 cut(s) | 640, 1155, 1684, 1834, 2905 |
| BccI | CCATC | 4 cut(s) | 250, 1297, 2113, 2590 |
| BciT130I | CCWGG | 5 cut(s) | 103, 766, 1573, 2035, 2816 |
| BciVI | GTATCC | 1 cut(s) | 2390 |
| BclI | TGATCA | 3 cut(s) | 421, 880, 2928 |
| BcoDI | GTCTC | 9 cut(s) | 245, 554, 1169, 1239, 1668, 1817, 1964, 2337, 2914 |
| BfaI | CTAG | 6 cut(s) | 1080, 1139, 1364, 1887, 2454, 2840 |
| BfmI | CTRYAG | 3 cut(s) | 1169, 2891, 2966 |
| BfuAI | ACCTGC | 3 cut(s) | 418, 1492, 2429 |
| BfuI | GTATCC | 1 cut(s) | 2390 |
| BglII | AGATCT | 2 cut(s) | 1407, 2782 |
| BisI | GCNGC | 7 cut(s) | 120, 629, 800, 1169, 1698, 1848, 2894 |
| BlsI | GCNGC | 7 cut(s) | 121, 630, 801, 1170, 1699, 1849, 2895 |
| Bme1390I | CCNGG | 5 cut(s) | 103, 766, 1573, 2035, 2816 |
| Bme18I | GGWCC | 1 cut(s) | 900 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 2593 |
| BmeT110I | CYCGRG | 1 cut(s) | 176 |
| BmgT120I | GGNCC | 2 cut(s) | 617, 900 |
| BmiI | GGNNCC | 1 cut(s) | 837 |
| BmrFI | CCNGG | 5 cut(s) | 103, 766, 1573, 2035, 2816 |
| BmsI | GCATC | 7 cut(s) | 114, 1107, 1150, 1237, 1318, 2188, 2765 |
| BpiI | GAAGAC | 2 cut(s) | 2367, 2837 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 319, 351 |
| BsaBI | GATNNNNATC | 2 cut(s) | 260, 879 |
| BsaI | GGTCTC | 3 cut(s) | 1239, 2337, 2914 |
| BsaJI | CCNNGG | 3 cut(s) | 1572, 1609, 2815 |
| BsaWI | WCCGGW | 3 cut(s) | 2506, 2787, 2884 |
| BsaXI | ACNNNNNCTCC | 6 cut(s) | 452, 482, 752, 782, 2592, 2622 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 18, 1615, 1792, 2513, 2617 |
| Bse118I | RCCGGY | 1 cut(s) | 2884 |
| Bse1I | ACTGG | 1 cut(s) | 120 |
| Bse3DI | GCAATG | 2 cut(s) | 42, 638 |
| Bse8I | GATNNNNATC | 2 cut(s) | 260, 879 |
| BseAI | TCCGGA | 2 cut(s) | 2506, 2787 |
| BseBI | CCWGG | 5 cut(s) | 103, 766, 1573, 2035, 2816 |
| BseDI | CCNNGG | 3 cut(s) | 1572, 1609, 2815 |
| BseGI | GGATG | 3 cut(s) | 1002, 1122, 1165 |
| BseJI | GATNNNNATC | 2 cut(s) | 260, 879 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 18, 1615, 1792, 2513, 2617 |
| BseMI | GCAATG | 2 cut(s) | 42, 638 |
| BseMII | CTCAG | 5 cut(s) | 243, 600, 1251, 2472, 2793 |
| BseNI | ACTGG | 1 cut(s) | 120 |
| BseRI | GAGGAG | 2 cut(s) | 356, 968 |
| BseSI | GKGCMC | 2 cut(s) | 30, 840 |
| BseXI | GCAGC | 5 cut(s) | 640, 1155, 1684, 1834, 2905 |
| BseYI | CCCAGC | 1 cut(s) | 2446 |
| BsgI | GTGCAG | 2 cut(s) | 1573, 1585 |
| Bsh1236I | CGCG | 2 cut(s) | 804, 2054 |
| BshFI | GGCC | 2 cut(s) | 619, 963 |
| BshNI | GGYRCC | 1 cut(s) | 835 |
| BshTI | ACCGGT | 1 cut(s) | 2884 |
| BsiHKAI | GWGCWC | 2 cut(s) | 30, 465 |
| BsiHKCI | CYCGRG | 1 cut(s) | 176 |
| BsiSI | CCGG | 4 cut(s) | 458, 2507, 2788, 2885 |
| BslFI | GGGAC | 1 cut(s) | 1363 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 18, 1615, 1792, 2513, 2617 |
| BsmAI | GTCTC | 9 cut(s) | 245, 554, 1169, 1239, 1668, 1817, 1964, 2337, 2914 |
| BsmBI | CGTCTC | 1 cut(s) | 245 |
| BsmFI | GGGAC | 1 cut(s) | 1363 |
| BsmI | GAATGC | 1 cut(s) | 1754 |
| BsnI | GGCC | 2 cut(s) | 619, 963 |
| Bso31I | GGTCTC | 3 cut(s) | 1239, 2337, 2914 |
| BsoBI | CYCGRG | 1 cut(s) | 176 |
| Bsp1286I | GDGCHC | 3 cut(s) | 30, 465, 840 |
| Bsp13I | TCCGGA | 2 cut(s) | 2506, 2787 |
| Bsp1407I | TGTACA | 1 cut(s) | 2521 |
| BspANI | GGCC | 2 cut(s) | 619, 963 |
| BspCNI | CTCAG | 5 cut(s) | 244, 601, 1252, 2473, 2794 |
| BspEI | TCCGGA | 2 cut(s) | 2506, 2787 |
| BspFNI | CGCG | 2 cut(s) | 804, 2054 |
| BspHI | TCATGA | 3 cut(s) | 991, 1819, 1966 |
| BspLI | GGNNCC | 1 cut(s) | 837 |
| BspMAI | CTGCAG | 2 cut(s) | 1173, 2895 |
| BspMI | ACCTGC | 3 cut(s) | 418, 1492, 2429 |
| BspPI | GGATC | 4 cut(s) | 326, 576, 2817, 2829 |
| BspT107I | GGYRCC | 1 cut(s) | 835 |
| BspTNI | GGTCTC | 3 cut(s) | 1239, 2337, 2914 |
| BsrBI | CCGCTC | 1 cut(s) | 85 |
| BsrDI | GCAATG | 2 cut(s) | 42, 638 |
| BsrFI | RCCGGY | 1 cut(s) | 2884 |
| BsrGI | TGTACA | 1 cut(s) | 2521 |
| BsrI | ACTGG | 1 cut(s) | 120 |
| BssAI | RCCGGY | 1 cut(s) | 2884 |
| BssECI | CCNNGG | 3 cut(s) | 1572, 1609, 2815 |
| BssT1I | CCWWGG | 1 cut(s) | 1609 |
| Bst2UI | CCWGG | 5 cut(s) | 103, 766, 1573, 2035, 2816 |
| Bst4CI | ACNGT | 3 cut(s) | 1606, 1828, 1975 |
| Bst6I | CTCTTC | 7 cut(s) | 379, 933, 1086, 1223, 1572, 1938, 2616 |
| BstAUI | TGTACA | 1 cut(s) | 2521 |
| BstC8I | GCNNGC | 6 cut(s) | 51, 297, 315, 1783, 1930, 2549 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 1613 |
| BstF5I | GGATG | 3 cut(s) | 1002, 1122, 1165 |
| BstFNI | CGCG | 2 cut(s) | 804, 2054 |
| BstHHI | GCGC | 3 cut(s) | 49, 804, 2054 |
| BstMAI | GTCTC | 9 cut(s) | 245, 554, 1169, 1239, 1668, 1817, 1964, 2337, 2914 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 433, 625, 634 |
| BstNI | CCWGG | 5 cut(s) | 103, 766, 1573, 2035, 2816 |
| BstNSI | RCATGY | 3 cut(s) | 53, 1785, 1932 |
| BstSCI | CCNGG | 5 cut(s) | 101, 764, 1571, 2033, 2814 |
| BstSFI | CTRYAG | 3 cut(s) | 1169, 2891, 2966 |
| BstSLI | GKGCMC | 2 cut(s) | 30, 840 |
| BstUI | CGCG | 2 cut(s) | 804, 2054 |
| BstV1I | GCAGC | 5 cut(s) | 640, 1155, 1684, 1834, 2905 |
| BstV2I | GAAGAC | 2 cut(s) | 2367, 2837 |
| BstX2I | RGATCY | 4 cut(s) | 568, 1407, 2782, 2809 |
| BstYI | RGATCY | 4 cut(s) | 568, 1407, 2782, 2809 |
| BsuI | GTATCC | 1 cut(s) | 2390 |
| BsuRI | GGCC | 2 cut(s) | 619, 963 |
| BtgZI | GCGATG | 1 cut(s) | 137 |
| BtsCI | GGATG | 3 cut(s) | 1002, 1122, 1165 |
| BtsI | GCAGTG | 3 cut(s) | 190, 1597, 1992 |
| BtsIMutI | CAGTG | 4 cut(s) | 190, 1535, 1597, 1992 |
| BveI | ACCTGC | 3 cut(s) | 418, 1492, 2429 |
| Cac8I | GCNNGC | 6 cut(s) | 51, 297, 315, 1783, 1930, 2549 |
| CciI | TCATGA | 3 cut(s) | 991, 1819, 1966 |
| CfoI | GCGC | 3 cut(s) | 49, 804, 2054 |
| Cfr10I | RCCGGY | 1 cut(s) | 2884 |
| Cfr13I | GGNCC | 2 cut(s) | 617, 900 |
| CseI | GACGC | 3 cut(s) | 227, 881, 1853 |
| Csp6I | GTAC | 3 cut(s) | 346, 2522, 2717 |
| CspAI | ACCGGT | 1 cut(s) | 2884 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 719, 754 |
| CviQI | GTAC | 3 cut(s) | 346, 2522, 2717 |
| DriI | GACNNNNNGTC | 1 cut(s) | 2593 |
| Eam1104I | CTCTTC | 7 cut(s) | 379, 933, 1086, 1223, 1572, 1938, 2616 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 2593 |
| EarI | CTCTTC | 7 cut(s) | 379, 933, 1086, 1223, 1572, 1938, 2616 |
| EciI | GGCGGA | 1 cut(s) | 1040 |
| Eco130I | CCWWGG | 1 cut(s) | 1609 |
| Eco31I | GGTCTC | 3 cut(s) | 1239, 2337, 2914 |
| Eco32I | GATATC | 2 cut(s) | 99, 2077 |
| Eco47I | GGWCC | 1 cut(s) | 900 |
| Eco57I | CTGAAG | 7 cut(s) | 215, 933, 1064, 1206, 1379, 2030, 2274 |
| Eco88I | CYCGRG | 1 cut(s) | 176 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 1613 |
| EcoRI | GAATTC | 1 cut(s) | 412 |
| EcoRII | CCWGG | 5 cut(s) | 101, 764, 1571, 2033, 2814 |
| EcoRV | GATATC | 2 cut(s) | 99, 2077 |
| EcoT14I | CCWWGG | 1 cut(s) | 1609 |
| EcoT22I | ATGCAT | 2 cut(s) | 2203, 2964 |
| ErhI | CCWWGG | 1 cut(s) | 1609 |
| Esp3I | CGTCTC | 1 cut(s) | 245 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 2247, 2279 |
| FaqI | GGGAC | 1 cut(s) | 1363 |
| FauI | CCCGC | 1 cut(s) | 1041 |
| FbaI | TGATCA | 3 cut(s) | 421, 880, 2928 |
| FblI | GTMKAC | 2 cut(s) | 2290, 2597 |
| Fnu4HI | GCNGC | 7 cut(s) | 120, 629, 800, 1169, 1698, 1848, 2894 |
| FokI | GGATG | 3 cut(s) | 989, 1129, 1172 |
| Fsp4HI | GCNGC | 7 cut(s) | 120, 629, 800, 1169, 1698, 1848, 2894 |
| FspBI | CTAG | 6 cut(s) | 1080, 1139, 1364, 1887, 2454, 2840 |
| GlaI | GCGC | 3 cut(s) | 48, 803, 2053 |
| GluI | GCNGC | 7 cut(s) | 120, 629, 800, 1169, 1698, 1848, 2894 |
| GsaI | CCCAGC | 1 cut(s) | 2450 |
| HaeIII | GGCC | 2 cut(s) | 619, 963 |
| HapII | CCGG | 4 cut(s) | 458, 2507, 2788, 2885 |
| HgaI | GACGC | 3 cut(s) | 227, 881, 1853 |
| HhaI | GCGC | 3 cut(s) | 49, 804, 2054 |
| Hin6I | GCGC | 3 cut(s) | 47, 802, 2052 |
| HinP1I | GCGC | 3 cut(s) | 47, 802, 2052 |
| HincII | GTYRAC | 2 cut(s) | 1843, 1990 |
| HindII | GTYRAC | 2 cut(s) | 1843, 1990 |
| HindIII | AAGCTT | 2 cut(s) | 2422, 2760 |
| HpaII | CCGG | 4 cut(s) | 458, 2507, 2788, 2885 |
| HphI | GGTGA | 6 cut(s) | 1144, 1625, 2203, 2486, 2641, 2874 |
| Hpy166II | GTNNAC | 5 cut(s) | 28, 1843, 1990, 2291, 2598 |
| Hpy8I | GTNNAC | 5 cut(s) | 28, 1843, 1990, 2291, 2598 |
| HpyCH4III | ACNGT | 3 cut(s) | 1606, 1828, 1975 |
| HpyCH4IV | ACGT | 1 cut(s) | 1549 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 433, 625, 634 |
| HpySE526I | ACGT | 1 cut(s) | 1549 |
| HspAI | GCGC | 3 cut(s) | 47, 802, 2052 |
| Kpn2I | TCCGGA | 2 cut(s) | 2506, 2787 |
| Ksp22I | TGATCA | 3 cut(s) | 421, 880, 2928 |
| LmnI | GCTCC | 1 cut(s) | 460 |
| Lsp1109I | GCAGC | 5 cut(s) | 640, 1155, 1684, 1834, 2905 |
| LweI | GCATC | 7 cut(s) | 114, 1107, 1150, 1237, 1318, 2188, 2765 |
| MaeI | CTAG | 6 cut(s) | 1080, 1139, 1364, 1887, 2454, 2840 |
| MaeII | ACGT | 1 cut(s) | 1549 |
| MaeIII | GTNAC | 4 cut(s) | 221, 1414, 1550, 2277 |
| MbiI | CCGCTC | 1 cut(s) | 85 |
| MfeI | CAATTG | 1 cut(s) | 128 |
| MflI | RGATCY | 4 cut(s) | 568, 1407, 2782, 2809 |
| MhlI | GDGCHC | 3 cut(s) | 30, 465, 840 |
| MlyI | GAGTC | 7 cut(s) | 257, 770, 1670, 1717, 1858, 2155, 2582 |
| MmeI | TCCRAC | 2 cut(s) | 1452, 2640 |
| Mph1103I | ATGCAT | 2 cut(s) | 2203, 2964 |
| MroI | TCCGGA | 2 cut(s) | 2506, 2787 |
| MroXI | GAANNNNTTC | 2 cut(s) | 1056, 1479 |
| MseI | TTAA | 5 cut(s) | 470, 2067, 2136, 2339, 2576 |
| MslI | CAYNNNNRTG | 2 cut(s) | 1103, 1517 |
| MspA1I | CMGCKG | 3 cut(s) | 898, 1810, 2446 |
| MspI | CCGG | 4 cut(s) | 458, 2507, 2788, 2885 |
| MspR9I | CCNGG | 5 cut(s) | 103, 766, 1573, 2035, 2816 |
| MunI | CAATTG | 1 cut(s) | 128 |
| Mva1269I | GAATGC | 1 cut(s) | 1754 |
| MvaI | CCWGG | 5 cut(s) | 103, 766, 1573, 2035, 2816 |
| MvnI | CGCG | 2 cut(s) | 804, 2054 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 433, 625, 634 |
| NlaIV | GGNNCC | 1 cut(s) | 837 |
| NmuCI | GTSAC | 1 cut(s) | 221 |
| NsiI | ATGCAT | 2 cut(s) | 2203, 2964 |
| NspI | RCATGY | 3 cut(s) | 53, 1785, 1932 |
| OliI | CACNNNNGTG | 2 cut(s) | 1103, 1517 |
| PaeI | GCATGC | 3 cut(s) | 53, 1785, 1932 |
| PaeR7I | CTCGAG | 1 cut(s) | 176 |
| PagI | TCATGA | 3 cut(s) | 991, 1819, 1966 |
| PctI | GAATGC | 1 cut(s) | 1754 |
| PdmI | GAANNNNTTC | 2 cut(s) | 1056, 1479 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 18 |
| PinAI | ACCGGT | 1 cut(s) | 2884 |
| PkrI | GCNGC | 7 cut(s) | 121, 630, 801, 1170, 1699, 1849, 2895 |
| PleI | GAGTC | 7 cut(s) | 256, 769, 1669, 1717, 1858, 2154, 2582 |
| PpsI | GAGTC | 7 cut(s) | 256, 769, 1669, 1717, 1858, 2154, 2582 |
| PsiI | TTATAA | 1 cut(s) | 2493 |
| Psp6I | CCWGG | 5 cut(s) | 101, 764, 1571, 2033, 2814 |
| PspFI | CCCAGC | 1 cut(s) | 2446 |
| PspGI | CCWGG | 5 cut(s) | 101, 764, 1571, 2033, 2814 |
| PspN4I | GGNNCC | 1 cut(s) | 837 |
| PspPI | GGNCC | 2 cut(s) | 617, 900 |
| PstI | CTGCAG | 2 cut(s) | 1173, 2895 |
| PsuI | RGATCY | 4 cut(s) | 568, 1407, 2782, 2809 |
| PvuII | CAGCTG | 2 cut(s) | 1810, 2446 |
| RsaI | GTAC | 3 cut(s) | 347, 2523, 2718 |
| RsaNI | GTAC | 3 cut(s) | 346, 2522, 2717 |
| RseI | CAYNNNNRTG | 2 cut(s) | 1103, 1517 |
| SaqAI | TTAA | 5 cut(s) | 470, 2067, 2136, 2339, 2576 |
| SatI | GCNGC | 7 cut(s) | 120, 629, 800, 1169, 1698, 1848, 2894 |
| Sau96I | GGNCC | 2 cut(s) | 617, 900 |
| SchI | GAGTC | 7 cut(s) | 257, 770, 1670, 1717, 1858, 2155, 2582 |
| ScrFI | CCNGG | 5 cut(s) | 103, 766, 1573, 2035, 2816 |
| SduI | GDGCHC | 3 cut(s) | 30, 465, 840 |
| SfaNI | GCATC | 7 cut(s) | 114, 1107, 1150, 1237, 1318, 2188, 2765 |
| SfcI | CTRYAG | 3 cut(s) | 1169, 2891, 2966 |
| Sfr274I | CTCGAG | 1 cut(s) | 176 |
| SinI | GGWCC | 1 cut(s) | 900 |
| SlaI | CTCGAG | 1 cut(s) | 176 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 1103, 1517 |
| SphI | GCATGC | 3 cut(s) | 53, 1785, 1932 |
| SspI | AATATT | 2 cut(s) | 1039, 2868 |
| SspMI | CTAG | 6 cut(s) | 1080, 1139, 1364, 1887, 2454, 2840 |
| StyD4I | CCNGG | 5 cut(s) | 101, 764, 1571, 2033, 2814 |
| StyI | CCWWGG | 1 cut(s) | 1609 |
| TaaI | ACNGT | 3 cut(s) | 1606, 1828, 1975 |
| TaiI | ACGT | 1 cut(s) | 1552 |
| TaqI | TCGA | 4 cut(s) | 8, 65, 177, 1060 |
| TatI | WGTACW | 3 cut(s) | 345, 2521, 2716 |
| TauI | GCSGC | 2 cut(s) | 122, 802 |
| Tru1I | TTAA | 5 cut(s) | 470, 2067, 2136, 2339, 2576 |
| Tru9I | TTAA | 5 cut(s) | 470, 2067, 2136, 2339, 2576 |
| TscAI | CASTG | 4 cut(s) | 190, 1535, 1604, 1999 |
| TseFI | GTSAC | 1 cut(s) | 221 |
| TseI | GCWGC | 5 cut(s) | 628, 1168, 1697, 1847, 2893 |
| Tsp45I | GTSAC | 1 cut(s) | 221 |
| TspGWI | ACGGA | 1 cut(s) | 1335 |
| TspRI | CASTG | 4 cut(s) | 190, 1535, 1604, 1999 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 18 |
| VneI | GTGCAC | 1 cut(s) | 26 |
| VpaK11BI | GGWCC | 1 cut(s) | 900 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 1613 |
| XapI | RAATTY | 5 cut(s) | 412, 1053, 1072, 1252, 2632 |
| XceI | RCATGY | 3 cut(s) | 53, 1785, 1932 |
| XhoI | CTCGAG | 1 cut(s) | 176 |
| XmiI | GTMKAC | 2 cut(s) | 2290, 2597 |
| XmnI | GAANNNNTTC | 2 cut(s) | 1056, 1479 |
| XspI | CTAG | 6 cut(s) | 1080, 1139, 1364, 1887, 2454, 2840 |
| Zsp2I | ATGCAT | 2 cut(s) | 2203, 2964 |