Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0013206

Physical Location & Seq

Genomic Coordinates Forward (+)

25340939 .. 25342027

Gene Structure 1089 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G227600.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 522 bp

ATGGACCAACGATCTTCCTCTAAAAATACTTATAATGCTGAACCACTTGAAGGAATTAACGATGTTTCTCAGCAAAAGCTTGTTCTTGGAGGAGAAGTATGCATGTGGGGTGAGACAGCTGATACATCAGATGTTCAGCAAACTATTTGGCCTCGAGCTGCTGCTGCGGCAGAGCGTTTGTGGAGCAGGAGGGAGGCAACATCTGCGCGAAATGGTAATTTAACTGCACTGCCTCGGCTACAATACTTCAGATGCCTCTTGAATAGACGTGGAGTTCAAGCTGCTCCAGTGACCAACTTGATTGCTCGAAGTCCTCCAATTTGGTCCGCGGGTCATGCTATGACCAATAATACTTCGATTATCATATTAGGTGATTTCATTAGTCTTAAACTTCCCTTCCAATGCTATACAGATAAATGCAAGCGTTCTAGAGATTTTGCATATCTGTTGTTCAAACATGCATGCCTATTTATGATAGCTATTATTGTCAGAATTTACGGTTTAGAATCTTTTGCTTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004553 GO:0004563 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005829 GO:0009505 GO:0015929 GO:0016787 GO:0016798 GO:0030312 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko00511 ko00513 ko00520 ko00531 ko00603 ko00604 ko01100 ko04142 map00511 map00513 map00520 map00531 map00603 map00604 map01100 map04142

Pfam Domains

Protein Families

Glyco_hydro_20 Glycohydro_20b2

Protein Analysis

174

Amino Acids

19.39

Weight (kDa)

9.27

Isoelectric Point (pI)

42.28

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013206)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G65590 AT3G55260
fragaria_vesca	FvH4_7g21240
malus_domestica	MD01G1120700.v1.1 MD07G1190100.v1.1
prunus_persica	Prupe.2G227600_v2.0.a1 Prupe.2G227600_v2.0.a1 Prupe.2G228000_v2.0.a1
pyrus_communis	pycom01g14730 pycom07g17970
rosa_chinensis	RchiOBHm_Chr1g0365681
rosa_laevigata	RLG00000027418
rosa_roxburghii	Rroxscaffold_4G00291090
rosa_samantha	Rh1AG331300 Rh1BG292800 Rh1CG309300 Rh1DG324300
rosa_wichuraiana	Rw1G029430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	33
AccII	CGCG	2 cut(s)	208, 329
AciI	CCGC	3 cut(s)	167, 327, 329
AcsI	RAATTY	1 cut(s)	492
AcuI	CTGAAG	1 cut(s)	232
AfiI	CCNNNNNNNGG	1 cut(s)	50
AgsI	TTSAA	4 cut(s)	50, 262, 278, 454
AjiI	CACGTC	1 cut(s)	269
AluBI	AGCT	5 cut(s)	79, 119, 158, 281, 479
AluI	AGCT	5 cut(s)	79, 119, 158, 281, 479
Alw26I	GTCTC	1 cut(s)	107
Ama87I	CYCGRG	1 cut(s)	153
AoxI	GGCC	1 cut(s)	149
ApeKI	GCWGC	4 cut(s)	158, 161, 164, 281
ApoI	RAATTY	1 cut(s)	492
AspLEI	GCGC	1 cut(s)	208
AspS9I	GGNCC	2 cut(s)	4, 324
AsuHPI	GGTGA	2 cut(s)	122, 383
AvaI	CYCGRG	1 cut(s)	153
AvaII	GGWCC	2 cut(s)	4, 324
BbvI	GCAGC	4 cut(s)	145, 148, 151, 268
BcoDI	GTCTC	1 cut(s)	107
BfaI	CTAG	1 cut(s)	429
BisI	GCNGC	5 cut(s)	159, 162, 165, 168, 282
BlsI	GCNGC	5 cut(s)	160, 163, 166, 169, 283
Bme18I	GGWCC	2 cut(s)	4, 324
BmeT110I	CYCGRG	1 cut(s)	153
BmgBI	CACGTC	1 cut(s)	269
BmgT120I	GGNCC	2 cut(s)	4, 324
BmsI	GCATC	1 cut(s)	242
BpmI	CTGGAG	1 cut(s)	270
BsaJI	CCNNGG	2 cut(s)	233, 327
BsaXI	ACNNNNNCTCC	2 cut(s)	81, 111
Bsc4I	CCNNNNNNNGG	1 cut(s)	50
Bse1I	ACTGG	1 cut(s)	287
BseDI	CCNNGG	2 cut(s)	233, 327
BseLI	CCNNNNNNNGG	1 cut(s)	50
BseMII	CTCAG	1 cut(s)	83
BseNI	ACTGG	1 cut(s)	287
BseRI	GAGGAG	1 cut(s)	105
BseXI	GCAGC	4 cut(s)	145, 148, 151, 268
BsgI	GTGCAG	1 cut(s)	210
Bsh1236I	CGCG	2 cut(s)	208, 329
BshFI	GGCC	1 cut(s)	151
BsiHKCI	CYCGRG	1 cut(s)	153
BslI	CCNNNNNNNGG	1 cut(s)	50
BsmAI	GTCTC	1 cut(s)	107
BsnI	GGCC	1 cut(s)	151
BsoBI	CYCGRG	1 cut(s)	153
Bsp143I	GATC	1 cut(s)	11
BspACI	CCGC	3 cut(s)	167, 327, 329
BspANI	GGCC	1 cut(s)	151
BspCNI	CTCAG	1 cut(s)	82
BspFNI	CGCG	2 cut(s)	208, 329
BsrI	ACTGG	1 cut(s)	287
BssECI	CCNNGG	2 cut(s)	233, 327
BssMI	GATC	1 cut(s)	11
Bst4CI	ACNGT	1 cut(s)	500
BstAPI	GCANNNNNTGC	1 cut(s)	203
BstC8I	GCNNGC	2 cut(s)	422, 463
BstDEI	CTNAG	1 cut(s)	69
BstDSI	CCRYGG	1 cut(s)	327
BstFNI	CGCG	2 cut(s)	208, 329
BstHHI	GCGC	1 cut(s)	208
BstKTI	GATC	1 cut(s)	14
BstMAI	GTCTC	1 cut(s)	107
BstMBI	GATC	1 cut(s)	11
BstMWI	GCNNNNNNNGC	4 cut(s)	164, 167, 203, 335
BstNSI	RCATGY	3 cut(s)	106, 461, 465
BstUI	CGCG	2 cut(s)	208, 329
BstV1I	GCAGC	4 cut(s)	145, 148, 151, 268
BsuRI	GGCC	1 cut(s)	151
BtgI	CCRYGG	1 cut(s)	327
BtrI	CACGTC	1 cut(s)	269
BtsI	GCAGTG	1 cut(s)	227
BtsIMutI	CAGTG	2 cut(s)	227, 294
Cac8I	GCNNGC	2 cut(s)	422, 463
CfoI	GCGC	1 cut(s)	208
Cfr13I	GGNCC	2 cut(s)	4, 324
Cfr42I	CCGCGG	1 cut(s)	330
CviAII	CATG	4 cut(s)	103, 335, 458, 462
CviJI	RGCY	7 cut(s)	79, 119, 151, 158, 238, 281, 479
CviKI_1	RGCY	7 cut(s)	79, 119, 151, 158, 238, 281, 479
DdeI	CTNAG	1 cut(s)	69
DpnI	GATC	1 cut(s)	13
DpnII	GATC	1 cut(s)	11
Eco47I	GGWCC	2 cut(s)	4, 324
Eco57I	CTGAAG	1 cut(s)	232
Eco88I	CYCGRG	1 cut(s)	153
EcoT22I	ATGCAT	2 cut(s)	104, 463
FaeI	CATG	4 cut(s)	106, 338, 461, 465
FatI	CATG	4 cut(s)	102, 334, 457, 461
FauI	CCCGC	1 cut(s)	322
Fnu4HI	GCNGC	5 cut(s)	159, 162, 165, 168, 282
Fsp4HI	GCNGC	5 cut(s)	159, 162, 165, 168, 282
FspBI	CTAG	1 cut(s)	429
GlaI	GCGC	1 cut(s)	207
GluI	GCNGC	5 cut(s)	159, 162, 165, 168, 282
GsuI	CTGGAG	1 cut(s)	270
HaeIII	GGCC	1 cut(s)	151
HhaI	GCGC	1 cut(s)	208
Hin1II	CATG	4 cut(s)	106, 338, 461, 465
Hin6I	GCGC	1 cut(s)	206
HinP1I	GCGC	1 cut(s)	206
HindIII	AAGCTT	1 cut(s)	77
HinfI	GANTC	1 cut(s)	506
HphI	GGTGA	2 cut(s)	122, 383
Hpy188I	TCNGA	3 cut(s)	130, 251, 491
Hpy188III	TCNNGA	3 cut(s)	259, 429, 519
HpyAV	CCTTC	2 cut(s)	44, 406
HpyCH4III	ACNGT	1 cut(s)	500
HpyCH4IV	ACGT	1 cut(s)	268
HpyCH4V	TGCA	5 cut(s)	102, 227, 420, 440, 461
HpyF10VI	GCNNNNNNNGC	4 cut(s)	164, 167, 203, 335
HpyF3I	CTNAG	1 cut(s)	69
HpySE526I	ACGT	1 cut(s)	268
Hsp92II	CATG	4 cut(s)	106, 338, 461, 465
HspAI	GCGC	1 cut(s)	206
KspI	CCGCGG	1 cut(s)	330
Kzo9I	GATC	1 cut(s)	11
LmnI	GCTCC	2 cut(s)	183, 289
LpnPI	CCDG	2 cut(s)	172, 300
Lsp1109I	GCAGC	4 cut(s)	145, 148, 151, 268
LweI	GCATC	1 cut(s)	242
MaeI	CTAG	1 cut(s)	429
MaeII	ACGT	1 cut(s)	268
MaeIII	GTNAC	1 cut(s)	289
MalI	GATC	1 cut(s)	13
MboI	GATC	1 cut(s)	11
MboII	GAAGA	1 cut(s)	6
MluCI	AATT	4 cut(s)	54, 217, 318, 492
MnlI	CCTC	8 cut(s)	28, 83, 162, 183, 187, 243, 266, 324
Mph1103I	ATGCAT	2 cut(s)	104, 463
MseI	TTAA	3 cut(s)	57, 221, 387
MspA1I	CMGCKG	2 cut(s)	119, 329
MvnI	CGCG	2 cut(s)	208, 329
MwoI	GCNNNNNNNGC	4 cut(s)	164, 167, 203, 335
NdeII	GATC	1 cut(s)	11
NlaIII	CATG	4 cut(s)	106, 338, 461, 465
NmeAIII	GCCGAG	1 cut(s)	214
NmuCI	GTSAC	1 cut(s)	289
NsiI	ATGCAT	2 cut(s)	104, 463
NspI	RCATGY	3 cut(s)	106, 461, 465
PaeI	GCATGC	1 cut(s)	465
PaeR7I	CTCGAG	1 cut(s)	153
PfeI	GAWTC	1 cut(s)	506
PkrI	GCNGC	5 cut(s)	160, 163, 166, 169, 283
PsiI	TTATAA	1 cut(s)	33
PspPI	GGNCC	2 cut(s)	4, 324
PspXI	VCTCGAGB	1 cut(s)	153
PvuII	CAGCTG	1 cut(s)	119
SacII	CCGCGG	1 cut(s)	330
SaqAI	TTAA	3 cut(s)	57, 221, 387
SatI	GCNGC	5 cut(s)	159, 162, 165, 168, 282
Sau3AI	GATC	1 cut(s)	11
Sau96I	GGNCC	2 cut(s)	4, 324
SetI	ASST	7 cut(s)	81, 121, 160, 271, 283, 373, 481
SfaNI	GCATC	1 cut(s)	242
Sfr274I	CTCGAG	1 cut(s)	153
Sfr303I	CCGCGG	1 cut(s)	330
SgrBI	CCGCGG	1 cut(s)	330
SinI	GGWCC	2 cut(s)	4, 324
SlaI	CTCGAG	1 cut(s)	153
SmlI	CTYRAG	1 cut(s)	153
SmoI	CTYRAG	1 cut(s)	153
SphI	GCATGC	1 cut(s)	465
Sse9I	AATT	4 cut(s)	54, 217, 318, 492
SsiI	CCGC	3 cut(s)	167, 327, 329
SspMI	CTAG	1 cut(s)	429
TaaI	ACNGT	1 cut(s)	500
TaiI	ACGT	1 cut(s)	271
TaqI	TCGA	3 cut(s)	154, 307, 356
TasI	AATT	4 cut(s)	54, 217, 318, 492
TauI	GCSGC	1 cut(s)	170
TfiI	GAWTC	1 cut(s)	506
Tru1I	TTAA	3 cut(s)	57, 221, 387
Tru9I	TTAA	3 cut(s)	57, 221, 387
TscAI	CASTG	2 cut(s)	234, 294
TseFI	GTSAC	1 cut(s)	289
TseI	GCWGC	4 cut(s)	158, 161, 164, 281
Tsp45I	GTSAC	1 cut(s)	289
TspDTI	ATGAA	1 cut(s)	367
TspRI	CASTG	2 cut(s)	234, 294
VpaK11BI	GGWCC	2 cut(s)	4, 324
XapI	RAATTY	1 cut(s)	492
XbaI	TCTAGA	1 cut(s)	428
XceI	RCATGY	3 cut(s)	106, 461, 465
XhoI	CTCGAG	1 cut(s)	153
XspI	CTAG	1 cut(s)	429
Zsp2I	ATGCAT	2 cut(s)	104, 463

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.