Putative S-adenosyl-L-methionine-dependent methyltransferase
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| Species | Orthologous Gene IDs |
|---|---|
| fragaria_vesca | FvH4_7g29090 FvH4_7g29090 |
| malus_domestica | MD01G1197400.v1.1 MD07G1265000.v1.1 |
| prunus_persica | Prupe.2G290800_v2.0.a1 |
| rosa_chinensis | RchiOBHm_Chr1g0376801 |
| rosa_laevigata | RLG00000026569 |
| rosa_multiflora | Rmu_co8346801.1_g000001 Rmu_co8475237.1_g000001 Rmu_sc0002113.1_g000007 |
| rosa_roxburghii | Rroxscaffold_4G00281710 |
| rosa_rugosa | Rorug01G0398500 |
| rosa_samantha | Rh1AG415800 Rh1BG375200 Rh1CG389000 Rh1DG405800 |
| rosa_wichuraiana | Rw1G036470 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 1265 |
| AatII | GACGTC | 1 cut(s) | 1545 |
| Acc36I | ACCTGC | 1 cut(s) | 1265 |
| AccB1I | GGYRCC | 2 cut(s) | 152, 599 |
| AccI | GTMKAC | 3 cut(s) | 84, 1539, 1619 |
| AccII | CGCG | 4 cut(s) | 435, 626, 758, 1676 |
| AclWI | GGATC | 3 cut(s) | 495, 560, 1190 |
| AcoI | YGGCCR | 2 cut(s) | 473, 1295 |
| AcsI | RAATTY | 2 cut(s) | 365, 1719 |
| AcuI | CTGAAG | 2 cut(s) | 1269, 1920 |
| AcyI | GRCGYC | 1 cut(s) | 1542 |
| AdeI | CACNNNGTG | 1 cut(s) | 339 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 439, 490, 596, 859, 1675 |
| AflIII | ACRYGT | 2 cut(s) | 624, 772 |
| AgsI | TTSAA | 5 cut(s) | 172, 319, 364, 1036, 1369 |
| AjiI | CACGTC | 1 cut(s) | 273 |
| AjnI | CCWGG | 6 cut(s) | 65, 589, 952, 1208, 1438, 1497 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 1460, 1492 |
| AluBI | AGCT | 7 cut(s) | 421, 523, 719, 1162, 1384, 1429, 1886 |
| AluI | AGCT | 7 cut(s) | 421, 523, 719, 1162, 1384, 1429, 1886 |
| Alw26I | GTCTC | 4 cut(s) | 759, 1297, 1746, 1904 |
| AlwI | GGATC | 3 cut(s) | 495, 560, 1190 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 1889 |
| Ama87I | CYCGRG | 1 cut(s) | 407 |
| ApeKI | GCWGC | 5 cut(s) | 421, 888, 1490, 1493, 1892 |
| ApoI | RAATTY | 2 cut(s) | 365, 1719 |
| AseI | ATTAAT | 1 cut(s) | 1329 |
| AspLEI | GCGC | 2 cut(s) | 760, 951 |
| AsuC2I | CCSGG | 1 cut(s) | 485 |
| AsuHPI | GGTGA | 3 cut(s) | 253, 1429, 1783 |
| AvaI | CYCGRG | 1 cut(s) | 407 |
| AvaII | GGWCC | 5 cut(s) | 541, 678, 1714, 1822, 1835 |
| AxyI | CCTNAGG | 1 cut(s) | 1839 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 759, 792 |
| BalI | TGGCCA | 2 cut(s) | 475, 1297 |
| BanI | GGYRCC | 2 cut(s) | 152, 599 |
| BauI | CACGAG | 1 cut(s) | 469 |
| BbsI | GAAGAC | 1 cut(s) | 1836 |
| BbvI | GCAGC | 5 cut(s) | 408, 875, 1477, 1480, 1879 |
| BccI | CCATC | 2 cut(s) | 908, 1705 |
| BceAI | ACGGC | 5 cut(s) | 163, 322, 466, 1371, 1850 |
| BciT130I | CCWGG | 6 cut(s) | 67, 591, 954, 1210, 1440, 1499 |
| BciVI | GTATCC | 1 cut(s) | 1219 |
| BclI | TGATCA | 2 cut(s) | 651, 1743 |
| BcnI | CCSGG | 1 cut(s) | 485 |
| BcoDI | GTCTC | 4 cut(s) | 759, 1297, 1746, 1904 |
| BfaI | CTAG | 2 cut(s) | 230, 858 |
| BfuAI | ACCTGC | 1 cut(s) | 1265 |
| BfuI | GTATCC | 1 cut(s) | 1219 |
| BmcAI | AGTACT | 2 cut(s) | 1001, 1877 |
| Bme1390I | CCNGG | 7 cut(s) | 67, 485, 591, 954, 1210, 1440, 1499 |
| Bme18I | GGWCC | 5 cut(s) | 541, 678, 1714, 1822, 1835 |
| BmeT110I | CYCGRG | 1 cut(s) | 407 |
| BmgBI | CACGTC | 1 cut(s) | 273 |
| BmiI | GGNNCC | 8 cut(s) | 154, 444, 575, 601, 905, 1339, 1436, 1533 |
| BmrFI | CCNGG | 7 cut(s) | 67, 485, 591, 954, 1210, 1440, 1499 |
| BmsI | GCATC | 5 cut(s) | 123, 337, 1673, 1783, 1794 |
| BpiI | GAAGAC | 1 cut(s) | 1836 |
| BpmI | CTGGAG | 2 cut(s) | 818, 1727 |
| BpuMI | CCSGG | 1 cut(s) | 485 |
| BsaAI | YACGTR | 1 cut(s) | 775 |
| BsaHI | GRCGYC | 1 cut(s) | 1542 |
| BsaJI | CCNNGG | 6 cut(s) | 65, 589, 899, 952, 1438, 1497 |
| BsaWI | WCCGGW | 1 cut(s) | 570 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 20, 50 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 439, 490, 596, 859, 1675 |
| Bse118I | RCCGGY | 2 cut(s) | 439, 576 |
| Bse1I | ACTGG | 5 cut(s) | 708, 787, 968, 1007, 1883 |
| Bse21I | CCTNAGG | 1 cut(s) | 1839 |
| Bse3DI | GCAATG | 6 cut(s) | 828, 877, 1107, 1241, 1620, 1803 |
| BseBI | CCWGG | 6 cut(s) | 67, 591, 954, 1210, 1440, 1499 |
| BseDI | CCNNGG | 6 cut(s) | 65, 589, 899, 952, 1438, 1497 |
| BseGI | GGATG | 5 cut(s) | 352, 738, 1066, 1108, 1699 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 439, 490, 596, 859, 1675 |
| BseMI | GCAATG | 6 cut(s) | 828, 877, 1107, 1241, 1620, 1803 |
| BseMII | CTCAG | 3 cut(s) | 595, 921, 1853 |
| BseNI | ACTGG | 5 cut(s) | 708, 787, 968, 1007, 1883 |
| BseRI | GAGGAG | 1 cut(s) | 229 |
| BseXI | GCAGC | 5 cut(s) | 408, 875, 1477, 1480, 1879 |
| BseYI | CCCAGC | 1 cut(s) | 1011 |
| BsgI | GTGCAG | 1 cut(s) | 1878 |
| Bsh1236I | CGCG | 4 cut(s) | 435, 626, 758, 1676 |
| Bsh1285I | CGRYCG | 3 cut(s) | 19, 373, 571 |
| BshNI | GGYRCC | 2 cut(s) | 152, 599 |
| BsiEI | CGRYCG | 3 cut(s) | 19, 373, 571 |
| BsiHKCI | CYCGRG | 1 cut(s) | 407 |
| BsiSI | CCGG | 5 cut(s) | 440, 484, 571, 577, 1730 |
| BslFI | GGGAC | 1 cut(s) | 390 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 439, 490, 596, 859, 1675 |
| BsmAI | GTCTC | 4 cut(s) | 759, 1297, 1746, 1904 |
| BsmBI | CGTCTC | 1 cut(s) | 1746 |
| BsmFI | GGGAC | 1 cut(s) | 390 |
| BsmI | GAATGC | 2 cut(s) | 1042, 1474 |
| BsoBI | CYCGRG | 1 cut(s) | 407 |
| Bsp143I | GATC | 8 cut(s) | 370, 487, 552, 651, 1195, 1504, 1743, 1776 |
| BspCNI | CTCAG | 3 cut(s) | 594, 922, 1852 |
| BspFNI | CGCG | 4 cut(s) | 435, 626, 758, 1676 |
| BspHI | TCATGA | 1 cut(s) | 1521 |
| BspLI | GGNNCC | 8 cut(s) | 154, 444, 575, 601, 905, 1339, 1436, 1533 |
| BspMI | ACCTGC | 1 cut(s) | 1265 |
| BspPI | GGATC | 3 cut(s) | 495, 560, 1190 |
| BspT107I | GGYRCC | 2 cut(s) | 152, 599 |
| BsrDI | GCAATG | 6 cut(s) | 828, 877, 1107, 1241, 1620, 1803 |
| BsrFI | RCCGGY | 2 cut(s) | 439, 576 |
| BsrI | ACTGG | 5 cut(s) | 708, 787, 968, 1007, 1883 |
| BssAI | RCCGGY | 2 cut(s) | 439, 576 |
| BssECI | CCNNGG | 6 cut(s) | 65, 589, 899, 952, 1438, 1497 |
| BssMI | GATC | 8 cut(s) | 370, 487, 552, 651, 1195, 1504, 1743, 1776 |
| BssNI | GRCGYC | 1 cut(s) | 1542 |
| BssSI | CACGAG | 1 cut(s) | 469 |
| BssT1I | CCWWGG | 1 cut(s) | 899 |
| Bst2BI | CACGAG | 1 cut(s) | 469 |
| Bst2UI | CCWGG | 6 cut(s) | 67, 591, 954, 1210, 1440, 1499 |
| Bst4CI | ACNGT | 5 cut(s) | 20, 463, 529, 1342, 1835 |
| Bst6I | CTCTTC | 3 cut(s) | 110, 347, 1388 |
| BstACI | GRCGYC | 1 cut(s) | 1542 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 1182 |
| BstBAI | YACGTR | 1 cut(s) | 775 |
| BstC8I | GCNNGC | 4 cut(s) | 437, 441, 992, 1160 |
| BstDEI | CTNAG | 4 cut(s) | 581, 930, 1724, 1839 |
| BstF5I | GGATG | 5 cut(s) | 352, 738, 1066, 1108, 1699 |
| BstFNI | CGCG | 4 cut(s) | 435, 626, 758, 1676 |
| BstHHI | GCGC | 2 cut(s) | 760, 951 |
| BstKTI | GATC | 8 cut(s) | 373, 490, 555, 654, 1198, 1507, 1746, 1779 |
| BstMAI | GTCTC | 4 cut(s) | 759, 1297, 1746, 1904 |
| BstMBI | GATC | 8 cut(s) | 370, 487, 552, 651, 1195, 1504, 1743, 1776 |
| BstMCI | CGRYCG | 3 cut(s) | 19, 373, 571 |
| BstMWI | GCNNNNNNNGC | 7 cut(s) | 49, 445, 500, 520, 888, 1182, 1892 |
| BstNI | CCWGG | 6 cut(s) | 67, 591, 954, 1210, 1440, 1499 |
| BstSCI | CCNGG | 7 cut(s) | 65, 483, 589, 952, 1208, 1438, 1497 |
| BstUI | CGCG | 4 cut(s) | 435, 626, 758, 1676 |
| BstV1I | GCAGC | 5 cut(s) | 408, 875, 1477, 1480, 1879 |
| BstV2I | GAAGAC | 1 cut(s) | 1836 |
| BstX2I | RGATCY | 1 cut(s) | 487 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 914, 990 |
| BstYI | RGATCY | 1 cut(s) | 487 |
| Bsu36I | CCTNAGG | 1 cut(s) | 1839 |
| BsuI | GTATCC | 1 cut(s) | 1219 |
| BtgZI | GCGATG | 1 cut(s) | 261 |
| BtrI | CACGTC | 1 cut(s) | 273 |
| BtsCI | GGATG | 5 cut(s) | 352, 738, 1066, 1108, 1699 |
| BtsIMutI | CAGTG | 1 cut(s) | 1665 |
| BveI | ACCTGC | 1 cut(s) | 1265 |
| Cac8I | GCNNGC | 4 cut(s) | 437, 441, 992, 1160 |
| CaiI | CAGNNNCTG | 1 cut(s) | 1889 |
| CciI | TCATGA | 1 cut(s) | 1521 |
| CfoI | GCGC | 2 cut(s) | 760, 951 |
| Cfr10I | RCCGGY | 2 cut(s) | 439, 576 |
| CpoI | CGGWCCG | 1 cut(s) | 678 |
| CseI | GACGC | 2 cut(s) | 632, 822 |
| CspI | CGGWCCG | 1 cut(s) | 678 |
| CviAII | CATG | 7 cut(s) | 160, 180, 604, 911, 1522, 1649, 1826 |
| DdeI | CTNAG | 4 cut(s) | 581, 930, 1724, 1839 |
| DpnI | GATC | 8 cut(s) | 372, 489, 554, 653, 1197, 1506, 1745, 1778 |
| DpnII | GATC | 8 cut(s) | 370, 487, 552, 651, 1195, 1504, 1743, 1776 |
| DraIII | CACNNNGTG | 1 cut(s) | 339 |
| EaeI | YGGCCR | 2 cut(s) | 473, 1295 |
| Eam1104I | CTCTTC | 3 cut(s) | 110, 347, 1388 |
| EarI | CTCTTC | 3 cut(s) | 110, 347, 1388 |
| Eco130I | CCWWGG | 1 cut(s) | 899 |
| Eco147I | AGGCCT | 1 cut(s) | 1208 |
| Eco32I | GATATC | 1 cut(s) | 640 |
| Eco47I | GGWCC | 5 cut(s) | 541, 678, 1714, 1822, 1835 |
| Eco57I | CTGAAG | 2 cut(s) | 1269, 1920 |
| Eco81I | CCTNAGG | 1 cut(s) | 1839 |
| Eco88I | CYCGRG | 1 cut(s) | 407 |
| EcoO109I | RGGNCCY | 1 cut(s) | 861 |
| EcoRI | GAATTC | 1 cut(s) | 1719 |
| EcoRII | CCWGG | 6 cut(s) | 65, 589, 952, 1208, 1438, 1497 |
| EcoRV | GATATC | 1 cut(s) | 640 |
| EcoT14I | CCWWGG | 1 cut(s) | 899 |
| EcoT22I | ATGCAT | 1 cut(s) | 1474 |
| ErhI | CCWWGG | 1 cut(s) | 899 |
| Esp3I | CGTCTC | 1 cut(s) | 1746 |
| FaeI | CATG | 7 cut(s) | 163, 183, 607, 914, 1525, 1652, 1829 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 832, 864 |
| FaqI | GGGAC | 1 cut(s) | 390 |
| FatI | CATG | 7 cut(s) | 159, 179, 603, 910, 1521, 1648, 1825 |
| FauI | CCCGC | 5 cut(s) | 214, 453, 820, 893, 950 |
| FbaI | TGATCA | 2 cut(s) | 651, 1743 |
| FblI | GTMKAC | 3 cut(s) | 84, 1539, 1619 |
| FokI | GGATG | 5 cut(s) | 359, 725, 1073, 1115, 1706 |
| FspBI | CTAG | 2 cut(s) | 230, 858 |
| GlaI | GCGC | 2 cut(s) | 759, 950 |
| GsaI | CCCAGC | 1 cut(s) | 1015 |
| GsuI | CTGGAG | 2 cut(s) | 818, 1727 |
| HapII | CCGG | 5 cut(s) | 440, 484, 571, 577, 1730 |
| HgaI | GACGC | 2 cut(s) | 632, 822 |
| HhaI | GCGC | 2 cut(s) | 760, 951 |
| Hin1I | GRCGYC | 1 cut(s) | 1542 |
| Hin1II | CATG | 7 cut(s) | 163, 183, 607, 914, 1525, 1652, 1829 |
| Hin6I | GCGC | 2 cut(s) | 758, 949 |
| HinP1I | GCGC | 2 cut(s) | 758, 949 |
| HincII | GTYRAC | 1 cut(s) | 1540 |
| HindII | GTYRAC | 1 cut(s) | 1540 |
| HindIII | AAGCTT | 1 cut(s) | 1160 |
| HinfI | GANTC | 6 cut(s) | 585, 825, 967, 1376, 1563, 1655 |
| HpaII | CCGG | 5 cut(s) | 440, 484, 571, 577, 1730 |
| HphI | GGTGA | 3 cut(s) | 253, 1429, 1783 |
| Hpy188I | TCNGA | 5 cut(s) | 584, 678, 824, 1381, 1599 |
| Hpy99I | CGWCG | 3 cut(s) | 101, 838, 1544 |
| HpyAV | CCTTC | 9 cut(s) | 63, 178, 529, 557, 864, 1000, 1093, 1339, 1437 |
| HpyCH4III | ACNGT | 5 cut(s) | 20, 463, 529, 1342, 1835 |
| HpyCH4IV | ACGT | 4 cut(s) | 81, 272, 774, 1542 |
| HpyF10VI | GCNNNNNNNGC | 7 cut(s) | 49, 445, 500, 520, 888, 1182, 1892 |
| HpyF3I | CTNAG | 4 cut(s) | 581, 930, 1724, 1839 |
| HpySE526I | ACGT | 4 cut(s) | 81, 272, 774, 1542 |
| Hsp92I | GRCGYC | 1 cut(s) | 1542 |
| Hsp92II | CATG | 7 cut(s) | 163, 183, 607, 914, 1525, 1652, 1829 |
| HspAI | GCGC | 2 cut(s) | 758, 949 |
| KroI | GCCGGC | 1 cut(s) | 439 |
| KroNI | GCCGGC | 1 cut(s) | 441 |
| Ksp22I | TGATCA | 2 cut(s) | 651, 1743 |
| Kzo9I | GATC | 8 cut(s) | 370, 487, 552, 651, 1195, 1504, 1743, 1776 |
| LmnI | GCTCC | 7 cut(s) | 125, 520, 716, 799, 887, 1737, 1891 |
| Lsp1109I | GCAGC | 5 cut(s) | 408, 875, 1477, 1480, 1879 |
| LweI | GCATC | 5 cut(s) | 123, 337, 1673, 1783, 1794 |
| MaeI | CTAG | 2 cut(s) | 230, 858 |
| MaeII | ACGT | 4 cut(s) | 81, 272, 774, 1542 |
| MaeIII | GTNAC | 2 cut(s) | 374, 1351 |
| MalI | GATC | 8 cut(s) | 372, 489, 554, 653, 1197, 1506, 1745, 1778 |
| MboI | GATC | 8 cut(s) | 370, 487, 552, 651, 1195, 1504, 1743, 1776 |
| MflI | RGATCY | 1 cut(s) | 487 |
| MlsI | TGGCCA | 2 cut(s) | 475, 1297 |
| MluCI | AATT | 9 cut(s) | 365, 547, 647, 1113, 1283, 1326, 1600, 1719, 1815 |
| MluI | ACGCGT | 1 cut(s) | 624 |
| MluNI | TGGCCA | 2 cut(s) | 475, 1297 |
| MlyI | GAGTC | 2 cut(s) | 834, 1572 |
| MmeI | TCCRAC | 2 cut(s) | 33, 1203 |
| Mox20I | TGGCCA | 2 cut(s) | 475, 1297 |
| Mph1103I | ATGCAT | 1 cut(s) | 1474 |
| MroNI | GCCGGC | 1 cut(s) | 439 |
| MscI | TGGCCA | 2 cut(s) | 475, 1297 |
| MseI | TTAA | 3 cut(s) | 1139, 1308, 1329 |
| MslI | CAYNNNNRTG | 2 cut(s) | 158, 1526 |
| Msp20I | TGGCCA | 2 cut(s) | 475, 1297 |
| MspA1I | CMGCKG | 2 cut(s) | 888, 990 |
| MspI | CCGG | 5 cut(s) | 440, 484, 571, 577, 1730 |
| MspR9I | CCNGG | 7 cut(s) | 67, 485, 591, 954, 1210, 1440, 1499 |
| Mva1269I | GAATGC | 2 cut(s) | 1042, 1474 |
| MvaI | CCWGG | 6 cut(s) | 67, 591, 954, 1210, 1440, 1499 |
| MvnI | CGCG | 4 cut(s) | 435, 626, 758, 1676 |
| MwoI | GCNNNNNNNGC | 7 cut(s) | 49, 445, 500, 520, 888, 1182, 1892 |
| NaeI | GCCGGC | 1 cut(s) | 441 |
| NciI | CCSGG | 1 cut(s) | 485 |
| NdeII | GATC | 8 cut(s) | 370, 487, 552, 651, 1195, 1504, 1743, 1776 |
| NgoMIV | GCCGGC | 1 cut(s) | 439 |
| NlaIII | CATG | 7 cut(s) | 163, 183, 607, 914, 1525, 1652, 1829 |
| NlaIV | GGNNCC | 8 cut(s) | 154, 444, 575, 601, 905, 1339, 1436, 1533 |
| NmeAIII | GCCGAG | 1 cut(s) | 1066 |
| NmuCI | GTSAC | 2 cut(s) | 374, 1351 |
| NsiI | ATGCAT | 1 cut(s) | 1474 |
| PagI | TCATGA | 1 cut(s) | 1521 |
| PaqCI | CACCTGC | 1 cut(s) | 1265 |
| PceI | AGGCCT | 1 cut(s) | 1208 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 467 |
| PctI | GAATGC | 2 cut(s) | 1042, 1474 |
| PdiI | GCCGGC | 1 cut(s) | 441 |
| PfeI | GAWTC | 4 cut(s) | 585, 967, 1376, 1655 |
| PflFI | GACNNNGTC | 1 cut(s) | 1757 |
| Ple19I | CGATCG | 1 cut(s) | 373 |
| PleI | GAGTC | 2 cut(s) | 833, 1571 |
| PpsI | GAGTC | 2 cut(s) | 833, 1571 |
| Ppu21I | YACGTR | 1 cut(s) | 775 |
| PshBI | ATTAAT | 1 cut(s) | 1329 |
| Psp6I | CCWGG | 6 cut(s) | 65, 589, 952, 1208, 1438, 1497 |
| PspFI | CCCAGC | 1 cut(s) | 1011 |
| PspGI | CCWGG | 6 cut(s) | 65, 589, 952, 1208, 1438, 1497 |
| PspN4I | GGNNCC | 8 cut(s) | 154, 444, 575, 601, 905, 1339, 1436, 1533 |
| PstNI | CAGNNNCTG | 1 cut(s) | 1889 |
| PsuI | RGATCY | 1 cut(s) | 487 |
| PsyI | GACNNNGTC | 1 cut(s) | 1757 |
| PvuI | CGATCG | 1 cut(s) | 373 |
| RseI | CAYNNNNRTG | 2 cut(s) | 158, 1526 |
| Rsr2I | CGGWCCG | 1 cut(s) | 678 |
| RsrII | CGGWCCG | 1 cut(s) | 678 |
| SalI | GTCGAC | 1 cut(s) | 1538 |
| SaqAI | TTAA | 3 cut(s) | 1139, 1308, 1329 |
| Sau3AI | GATC | 8 cut(s) | 370, 487, 552, 651, 1195, 1504, 1743, 1776 |
| ScaI | AGTACT | 2 cut(s) | 1001, 1877 |
| SchI | GAGTC | 2 cut(s) | 834, 1572 |
| ScrFI | CCNGG | 7 cut(s) | 67, 485, 591, 954, 1210, 1440, 1499 |
| SfaNI | GCATC | 5 cut(s) | 123, 337, 1673, 1783, 1794 |
| SinI | GGWCC | 5 cut(s) | 541, 678, 1714, 1822, 1835 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 158, 1526 |
| Sse9I | AATT | 9 cut(s) | 365, 547, 647, 1113, 1283, 1326, 1600, 1719, 1815 |
| SseBI | AGGCCT | 1 cut(s) | 1208 |
| SspMI | CTAG | 2 cut(s) | 230, 858 |
| StuI | AGGCCT | 1 cut(s) | 1208 |
| StyD4I | CCNGG | 7 cut(s) | 65, 483, 589, 952, 1208, 1438, 1497 |
| StyI | CCWWGG | 1 cut(s) | 899 |
| TaaI | ACNGT | 5 cut(s) | 20, 463, 529, 1342, 1835 |
| TaiI | ACGT | 4 cut(s) | 84, 275, 777, 1545 |
| TaqI | TCGA | 5 cut(s) | 369, 836, 1539, 1750, 1761 |
| TaqII | GACCGA | 1 cut(s) | 1731 |
| TasI | AATT | 9 cut(s) | 365, 547, 647, 1113, 1283, 1326, 1600, 1719, 1815 |
| TatI | WGTACW | 3 cut(s) | 330, 999, 1875 |
| TauI | GCSGC | 6 cut(s) | 153, 435, 514, 597, 600, 1176 |
| TfiI | GAWTC | 4 cut(s) | 585, 967, 1376, 1655 |
| Tru1I | TTAA | 3 cut(s) | 1139, 1308, 1329 |
| Tru9I | TTAA | 3 cut(s) | 1139, 1308, 1329 |
| TscAI | CASTG | 1 cut(s) | 1665 |
| TseFI | GTSAC | 2 cut(s) | 374, 1351 |
| TseI | GCWGC | 5 cut(s) | 421, 888, 1490, 1493, 1892 |
| Tsp45I | GTSAC | 2 cut(s) | 374, 1351 |
| TspDTI | ATGAA | 6 cut(s) | 1278, 1481, 1538, 1587, 1637, 1842 |
| TspGWI | ACGGA | 1 cut(s) | 274 |
| TspRI | CASTG | 1 cut(s) | 1665 |
| Tth111I | GACNNNGTC | 1 cut(s) | 1757 |
| VpaK11BI | GGWCC | 5 cut(s) | 541, 678, 1714, 1822, 1835 |
| VspI | ATTAAT | 1 cut(s) | 1329 |
| XapI | RAATTY | 2 cut(s) | 365, 1719 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 987 |
| XmiI | GTMKAC | 3 cut(s) | 84, 1539, 1619 |
| XspI | CTAG | 2 cut(s) | 230, 858 |
| ZraI | GACGTC | 1 cut(s) | 1543 |
| ZrmI | AGTACT | 2 cut(s) | 1001, 1877 |
| Zsp2I | ATGCAT | 1 cut(s) | 1474 |