Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8346801.1

Orthogroup ID

OG0013803

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 924

Gene Structure 924 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8346801.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 737 bp

ctgaggcctggtgggtactggattctatccggcccaccaatccgctggaagaaatactggaagggttgggaaagaacacaggaagacctgaacgaagaacaaactggcatagaggatgtagccactagcctttgctggaagaagttggtggagaagaacgacattgcaatttggcaaaaaccaactaatcacttaaactgcaaaatgaaccgaaagcttgccaagaatcgcaacttctgccctgctcaggatcctgatcaagcttggtacacaaagttggagacttgtttgactcctttaccggaagtttctagcgaagatgatgttgctggtgggaagttggcaaagtggccggagagactaacatcactgccgccgagaattagttggggaactgtgaagggtgtcacagctgaagattttcaacaggattcggagctatggcgaaaaagggtaactcattataaaacagtgaataatcaacttgcgcagcccggaaggtatagaaaccttctggatatgaatgcttacttgggtggatttgctgctgccctagttgatctgcctgtttgggtcatgaatatggttcccgtcgacgtgaaggttaacacactcggagttatctatgaacgtggattgatcggatcatatcaaaactggtgtgaagcaatgtctacatatccaagaacttatgacctcattcatgctgatacagtgtttagtctctacaaggacag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Methyltransf_29

Protein Analysis

245

Amino Acids

28.26

Weight (kDa)

8.22

Isoelectric Point (pI)

36.87

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013803)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g29090 FvH4_7g29090
malus_domestica	MD01G1197400.v1.1 MD07G1265000.v1.1
prunus_persica	Prupe.2G290800_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0376801
rosa_laevigata	RLG00000026569
rosa_multiflora	Rmu_co8346801.1_g000001 Rmu_co8475237.1_g000001 Rmu_sc0002113.1_g000007
rosa_roxburghii	Rroxscaffold_4G00281710
rosa_rugosa	Rorug01G0398500
rosa_samantha	Rh1AG415800 Rh1BG375200 Rh1CG389000 Rh1DG405800
rosa_wichuraiana	Rw1G036470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	465
Acc16I	TGCGCA	1 cut(s)	489
AccI	GTMKAC	2 cut(s)	594, 674
AciI	CCGC	2 cut(s)	43, 374
AclWI	GGATC	3 cut(s)	245, 258, 652
AcoI	YGGCCR	1 cut(s)	350
AcuI	CTGAAG	1 cut(s)	435
AfaI	GTAC	2 cut(s)	17, 269
AfiI	CCNNNNNNNGG	1 cut(s)	247
AgsI	TTSAA	1 cut(s)	425
AjiI	CACGTC	1 cut(s)	598
AjnI	CCWGG	1 cut(s)	7
AjuI	GAANNNNNNNTTGG	2 cut(s)	515, 547
AluBI	AGCT	4 cut(s)	217, 263, 413, 439
AluI	AGCT	4 cut(s)	217, 263, 413, 439
Alw26I	GTCTC	3 cut(s)	275, 352, 728
AlwI	GGATC	3 cut(s)	245, 258, 652
AoxI	GGCC	3 cut(s)	5, 31, 350
ApeKI	GCWGC	3 cut(s)	490, 545, 548
Asp700I	GAANNNNTTC	1 cut(s)	420
AspLEI	GCGC	1 cut(s)	490
AspS9I	GGNCC	1 cut(s)	32
AsuC2I	CCSGG	1 cut(s)	495
BamHI	GGATCC	1 cut(s)	250
BbsI	GAAGAC	1 cut(s)	90
BbvI	GCAGC	3 cut(s)	502, 532, 535
BciT130I	CCWGG	1 cut(s)	9
BclI	TGATCA	1 cut(s)	256
BcnI	CCSGG	1 cut(s)	495
BcoDI	GTCTC	3 cut(s)	275, 352, 728
BfaI	CTAG	3 cut(s)	126, 312, 554
BisI	GCNGC	4 cut(s)	374, 491, 546, 549
BlsI	GCNGC	4 cut(s)	375, 492, 547, 550
Bme1390I	CCNGG	2 cut(s)	9, 495
BmgBI	CACGTC	1 cut(s)	598
BmgT120I	GGNCC	1 cut(s)	32
BmiI	GGNNCC	2 cut(s)	252, 588
BmrFI	CCNGG	2 cut(s)	9, 495
BpiI	GAAGAC	1 cut(s)	90
Bpu10I	CCTNAGC	1 cut(s)	246
BpuMI	CCSGG	1 cut(s)	495
BsaBI	GATNNNNATC	1 cut(s)	255
BsaWI	WCCGGW	1 cut(s)	301
Bsc4I	CCNNNNNNNGG	1 cut(s)	247
Bse1I	ACTGG	4 cut(s)	23, 62, 109, 662
Bse3DI	GCAATG	2 cut(s)	162, 675
Bse8I	GATNNNNATC	1 cut(s)	255
BseBI	CCWGG	1 cut(s)	9
BseGI	GGATG	1 cut(s)	121
BseJI	GATNNNNATC	1 cut(s)	255
BseLI	CCNNNNNNNGG	1 cut(s)	247
BseMI	GCAATG	2 cut(s)	162, 675
BseMII	CTCAG	1 cut(s)	260
BseNI	ACTGG	4 cut(s)	23, 62, 109, 662
BseXI	GCAGC	3 cut(s)	502, 532, 535
BshFI	GGCC	3 cut(s)	7, 33, 352
BsiSI	CCGG	4 cut(s)	30, 302, 353, 495
BslI	CCNNNNNNNGG	1 cut(s)	247
BsmAI	GTCTC	3 cut(s)	275, 352, 728
BsmI	GAATGC	1 cut(s)	529
BsnI	GGCC	3 cut(s)	7, 33, 352
Bsp143I	GATC	5 cut(s)	250, 256, 559, 639, 644
BspACI	CCGC	2 cut(s)	43, 374
BspANI	GGCC	3 cut(s)	7, 33, 352
BspCNI	CTCAG	1 cut(s)	259
BspHI	TCATGA	1 cut(s)	576
BspLI	GGNNCC	2 cut(s)	252, 588
BspPI	GGATC	3 cut(s)	245, 258, 652
BsrDI	GCAATG	2 cut(s)	162, 675
BsrI	ACTGG	4 cut(s)	23, 62, 109, 662
BssMI	GATC	5 cut(s)	250, 256, 559, 639, 644
Bst2UI	CCWGG	1 cut(s)	9
Bst4CI	ACNGT	3 cut(s)	397, 472, 715
BstAPI	GCANNNNNTGC	1 cut(s)	237
BstC8I	GCNNGC	1 cut(s)	219
BstDEI	CTNAG	2 cut(s)	2, 246
BstF5I	GGATG	1 cut(s)	121
BstHHI	GCGC	1 cut(s)	490
BstKTI	GATC	5 cut(s)	253, 259, 562, 642, 647
BstMAI	GTCTC	3 cut(s)	275, 352, 728
BstMBI	GATC	5 cut(s)	250, 256, 559, 639, 644
BstMWI	GCNNNNNNNGC	1 cut(s)	237
BstNI	CCWGG	1 cut(s)	9
BstSCI	CCNGG	2 cut(s)	7, 493
BstV1I	GCAGC	3 cut(s)	502, 532, 535
BstV2I	GAAGAC	1 cut(s)	90
BstX2I	RGATCY	1 cut(s)	250
BstXI	CCANNNNNNTGG	1 cut(s)	45
BstYI	RGATCY	1 cut(s)	250
BsuRI	GGCC	3 cut(s)	7, 33, 352
BtrI	CACGTC	1 cut(s)	598
BtsCI	GGATG	1 cut(s)	121
BtsI	GCAGTG	1 cut(s)	368
BtsIMutI	CAGTG	3 cut(s)	368, 477, 720
Cac8I	GCNNGC	1 cut(s)	219
CciI	TCATGA	1 cut(s)	576
CfoI	GCGC	1 cut(s)	490
Cfr13I	GGNCC	1 cut(s)	32
Csp6I	GTAC	2 cut(s)	16, 268
CviAII	CATG	2 cut(s)	577, 704
CviQI	GTAC	2 cut(s)	16, 268
DdeI	CTNAG	2 cut(s)	2, 246
DpnI	GATC	5 cut(s)	252, 258, 561, 641, 646
DpnII	GATC	5 cut(s)	250, 256, 559, 639, 644
EaeI	YGGCCR	1 cut(s)	350
Eco147I	AGGCCT	1 cut(s)	7
Eco57I	CTGAAG	1 cut(s)	435
EcoRII	CCWGG	1 cut(s)	7
FaeI	CATG	2 cut(s)	580, 707
FatI	CATG	2 cut(s)	576, 703
FbaI	TGATCA	1 cut(s)	256
FblI	GTMKAC	2 cut(s)	594, 674
Fnu4HI	GCNGC	4 cut(s)	374, 491, 546, 549
FokI	GGATG	1 cut(s)	128
Fsp4HI	GCNGC	4 cut(s)	374, 491, 546, 549
FspBI	CTAG	3 cut(s)	126, 312, 554
FspI	TGCGCA	1 cut(s)	489
GlaI	GCGC	1 cut(s)	489
GluI	GCNGC	4 cut(s)	374, 491, 546, 549
HaeIII	GGCC	3 cut(s)	7, 33, 352
HapII	CCGG	4 cut(s)	30, 302, 353, 495
HhaI	GCGC	1 cut(s)	490
Hin1II	CATG	2 cut(s)	580, 707
Hin6I	GCGC	1 cut(s)	488
HinP1I	GCGC	1 cut(s)	488
HincII	GTYRAC	2 cut(s)	595, 607
HindII	GTYRAC	2 cut(s)	595, 607
HindIII	AAGCTT	2 cut(s)	215, 261
HinfI	GANTC	4 cut(s)	22, 226, 292, 431
HpaI	GTTAAC	1 cut(s)	607
HpaII	CCGG	4 cut(s)	30, 302, 353, 495
Hpy166II	GTNNAC	4 cut(s)	270, 595, 607, 675
Hpy188I	TCNGA	3 cut(s)	436, 617, 644
Hpy188III	TCNNGA	4 cut(s)	248, 254, 515, 577
Hpy8I	GTNNAC	4 cut(s)	270, 595, 607, 675
Hpy99I	CGWCG	2 cut(s)	596, 599
HpyAV	CCTTC	5 cut(s)	55, 394, 492, 521, 595
HpyCH4III	ACNGT	3 cut(s)	397, 472, 715
HpyCH4IV	ACGT	2 cut(s)	597, 631
HpyCH4V	TGCA	2 cut(s)	167, 201
HpyF10VI	GCNNNNNNNGC	1 cut(s)	237
HpyF3I	CTNAG	2 cut(s)	2, 246
HpySE526I	ACGT	2 cut(s)	597, 631
Hsp92II	CATG	2 cut(s)	580, 707
HspAI	GCGC	1 cut(s)	488
Ksp22I	TGATCA	1 cut(s)	256
KspAI	GTTAAC	1 cut(s)	607
Kzo9I	GATC	5 cut(s)	250, 256, 559, 639, 644
LmnI	GCTCC	1 cut(s)	436
Lsp1109I	GCAGC	3 cut(s)	502, 532, 535
MaeI	CTAG	3 cut(s)	126, 312, 554
MaeII	ACGT	2 cut(s)	597, 631
MaeIII	GTNAC	2 cut(s)	406, 454
MalI	GATC	5 cut(s)	252, 258, 561, 641, 646
MboI	GATC	5 cut(s)	250, 256, 559, 639, 644
MboII	GAAGA	7 cut(s)	61, 95, 107, 151, 166, 329, 428
MflI	RGATCY	1 cut(s)	250
MluCI	AATT	2 cut(s)	168, 381
MlyI	GAGTC	1 cut(s)	286
MmeI	TCCRAC	1 cut(s)	258
MnlI	CCTC	2 cut(s)	106, 707
MroXI	GAANNNNTTC	1 cut(s)	420
MseI	TTAA	2 cut(s)	194, 606
MslI	CAYNNNNRTG	1 cut(s)	581
MspA1I	CMGCKG	2 cut(s)	45, 413
MspI	CCGG	4 cut(s)	30, 302, 353, 495
MspR9I	CCNGG	2 cut(s)	9, 495
Mva1269I	GAATGC	1 cut(s)	529
MvaI	CCWGG	1 cut(s)	9
MwoI	GCNNNNNNNGC	1 cut(s)	237
NciI	CCSGG	1 cut(s)	495
NdeII	GATC	5 cut(s)	250, 256, 559, 639, 644
NlaIII	CATG	2 cut(s)	580, 707
NlaIV	GGNNCC	2 cut(s)	252, 588
NmeAIII	GCCGAG	1 cut(s)	402
NmuCI	GTSAC	1 cut(s)	406
NsbI	TGCGCA	1 cut(s)	489
PagI	TCATGA	1 cut(s)	576
PceI	AGGCCT	1 cut(s)	7
PctI	GAATGC	1 cut(s)	529
PdmI	GAANNNNTTC	1 cut(s)	420
PfeI	GAWTC	3 cut(s)	22, 226, 431
PkrI	GCNGC	4 cut(s)	375, 492, 547, 550
PleI	GAGTC	1 cut(s)	286
PpsI	GAGTC	1 cut(s)	286
PsiI	TTATAA	1 cut(s)	465
Psp6I	CCWGG	1 cut(s)	7
PspGI	CCWGG	1 cut(s)	7
PspN4I	GGNNCC	2 cut(s)	252, 588
PspPI	GGNCC	1 cut(s)	32
PsuI	RGATCY	1 cut(s)	250
PvuII	CAGCTG	1 cut(s)	413
RsaI	GTAC	2 cut(s)	17, 269
RsaNI	GTAC	2 cut(s)	16, 268
RseI	CAYNNNNRTG	1 cut(s)	581
SalI	GTCGAC	1 cut(s)	593
SaqAI	TTAA	2 cut(s)	194, 606
SatI	GCNGC	4 cut(s)	374, 491, 546, 549
Sau3AI	GATC	5 cut(s)	250, 256, 559, 639, 644
Sau96I	GGNCC	1 cut(s)	32
SchI	GAGTC	1 cut(s)	286
ScrFI	CCNGG	2 cut(s)	9, 495
SgrDI	CGTCGACG	1 cut(s)	593
SmiMI	CAYNNNNRTG	1 cut(s)	581
Sse9I	AATT	2 cut(s)	168, 381
SseBI	AGGCCT	1 cut(s)	7
SsiI	CCGC	2 cut(s)	43, 374
SspMI	CTAG	3 cut(s)	126, 312, 554
StuI	AGGCCT	1 cut(s)	7
StyD4I	CCNGG	2 cut(s)	7, 493
TaaI	ACNGT	3 cut(s)	397, 472, 715
TaiI	ACGT	2 cut(s)	600, 634
TaqI	TCGA	1 cut(s)	594
TasI	AATT	2 cut(s)	168, 381
TauI	GCSGC	1 cut(s)	376
TfiI	GAWTC	3 cut(s)	22, 226, 431
Tru1I	TTAA	2 cut(s)	194, 606
Tru9I	TTAA	2 cut(s)	194, 606
TscAI	CASTG	3 cut(s)	375, 477, 720
TseFI	GTSAC	1 cut(s)	406
TseI	GCWGC	3 cut(s)	490, 545, 548
Tsp45I	GTSAC	1 cut(s)	406
TspDTI	ATGAA	5 cut(s)	221, 536, 593, 642, 692
TspRI	CASTG	3 cut(s)	375, 477, 720
XcmI	CCANNNNNNNNNTGG	1 cut(s)	42
XmiI	GTMKAC	2 cut(s)	594, 674
XmnI	GAANNNNTTC	1 cut(s)	420
XspI	CTAG	3 cut(s)	126, 312, 554

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.